Wall clock time and date at job start Tue Mar 31 2020 00:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48496 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46830 * 299.99749 * 3 2 1 6 6 H 1.48497 * 109.47296 * 59.99456 * 3 2 1 7 7 C 1.37870 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00123 * 186.60123 * 7 2 1 9 9 C 1.50706 * 120.00277 * 6.59994 * 7 2 1 10 10 C 1.52995 * 112.99684 * 65.45021 * 9 7 2 11 11 O 1.42899 * 109.47344 * 53.52507 * 10 9 7 12 12 C 1.34995 * 117.00260 * 179.97438 * 11 10 9 13 13 O 1.21713 * 119.99843 * 0.02562 * 12 11 10 14 14 C 1.41285 * 120.00211 * 180.02562 * 12 11 10 15 15 C 1.35767 * 119.99973 * 179.73233 * 14 12 11 16 16 C 1.41524 * 119.99705 * 180.27517 * 15 14 12 17 17 C 1.38007 * 126.10509 * 179.97438 * 16 15 14 18 18 C 1.40278 * 106.52349 * 179.97438 * 17 16 15 19 19 C 1.35179 * 107.21433 * 0.02562 * 18 17 16 20 20 O 1.34008 * 109.03918 * 359.76689 * 19 18 17 21 21 C 1.54037 * 113.92525 * 197.38282 * 9 7 2 22 22 O 1.44181 * 85.51491 * 91.65950 * 21 9 7 23 23 C 1.44175 * 93.34058 * 24.18941 * 22 21 9 24 24 H 0.96999 * 120.00163 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47097 * 293.52377 * 10 9 7 26 26 H 1.09000 * 109.46892 * 173.52348 * 10 9 7 27 27 H 1.08000 * 120.00059 * 359.97438 * 14 12 11 28 28 H 1.07990 * 119.99921 * 0.26547 * 15 14 12 29 29 H 1.08000 * 126.73367 * 359.96236 * 17 16 15 30 30 H 1.07998 * 126.39640 * 179.97438 * 18 17 16 31 31 H 1.08005 * 125.48178 * 180.02562 * 19 18 17 32 32 H 1.08991 * 113.86133 * 205.80232 * 21 9 7 33 33 H 1.08992 * 113.86840 * 337.51379 * 21 9 7 34 34 H 1.09002 * 113.86233 * 221.65675 * 23 22 21 35 35 H 1.09004 * 113.98344 * 89.96832 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1970 0.1081 9 6 1.2586 -2.4949 -0.1489 10 6 0.5851 -2.6443 -1.5145 11 8 1.5519 -2.4416 -2.5471 12 6 1.1173 -2.5401 -3.8214 13 8 -0.0519 -2.7911 -4.0480 14 6 2.0198 -2.3519 -4.8921 15 6 1.5839 -2.4563 -6.1737 16 6 2.4891 -2.2735 -7.2460 17 6 2.1843 -2.3511 -8.5898 18 6 3.3774 -2.1028 -9.2845 19 6 4.3410 -1.8889 -8.3609 20 8 3.8034 -1.9874 -7.1374 21 6 2.0674 -3.7321 0.2846 22 8 1.4689 -3.5289 1.5805 23 6 0.3348 -2.8221 1.0394 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2097 -1.9046 -1.6106 26 1 0.1627 -3.6452 -1.6037 27 1 3.0572 -2.1287 -4.6911 28 1 0.5465 -2.6791 -6.3747 29 1 1.2171 -2.5619 -9.0216 30 1 3.5029 -2.0864 -10.3570 31 1 5.3767 -1.6695 -8.5748 32 1 1.7570 -4.6553 -0.2046 33 1 3.1467 -3.5812 0.2687 34 1 0.0400 -1.9495 1.6223 35 1 -0.5059 -3.4658 0.7802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123164095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:26 Heat of formation + Delta-G solvation = -80.748621 kcal Electronic energy + Delta-G solvation = -20923.636092 eV Core-core repulsion = 17468.964471 eV Total energy + Delta-G solvation = -3454.671621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.53573 -41.62449 -40.81974 -37.64965 -35.32080 -34.87924 -34.02833 -31.91821 -30.20797 -27.45296 -27.14697 -26.45568 -24.92295 -22.88035 -22.01569 -20.95722 -20.42200 -19.06592 -18.32303 -17.97289 -17.49145 -17.36513 -17.08272 -16.74591 -16.22716 -16.21325 -15.91393 -15.71596 -14.56523 -14.21749 -13.93773 -13.88230 -13.71930 -13.64409 -13.36746 -13.10430 -12.88906 -12.61673 -12.36202 -11.91209 -11.80914 -11.74905 -11.36170 -11.24791 -10.90118 -10.86131 -10.70700 -10.20278 -9.04263 -8.19030 -6.26706 -0.76268 1.05155 1.39025 1.41951 1.52751 1.62834 1.99109 2.08079 2.20774 2.40581 3.00475 3.22326 3.69740 3.94147 4.01255 4.02973 4.13710 4.23517 4.28983 4.46076 4.49185 4.58106 4.62631 4.74973 4.86334 4.96660 5.05151 5.11575 5.18927 5.24875 5.47538 5.50495 5.52512 5.70756 5.72786 6.07072 6.23025 6.71624 6.88335 7.38858 8.88414 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.004332 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.378153 B = 6462.672462 C = 7170.890602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.500 4.500 8 H 0.058 0.942 9 C 0.016 3.984 10 C 0.093 3.907 11 O -0.335 6.335 12 C 0.488 3.512 13 O -0.557 6.557 14 C -0.218 4.218 15 C 0.050 3.950 16 C -0.056 4.056 17 C -0.139 4.139 18 C -0.231 4.231 19 C -0.004 4.004 20 O -0.185 6.185 21 C 0.037 3.963 22 O -0.402 6.402 23 C 0.054 3.946 24 H 0.263 0.737 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.145 0.855 28 H 0.168 0.832 29 H 0.179 0.821 30 H 0.184 0.816 31 H 0.245 0.755 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 -4.224 -18.722 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.015 3.985 10 C 0.018 3.982 11 O -0.250 6.250 12 C 0.338 3.662 13 O -0.452 6.452 14 C -0.237 4.237 15 C 0.031 3.969 16 C -0.105 4.105 17 C -0.158 4.158 18 C -0.249 4.249 19 C -0.073 4.073 20 O -0.081 6.081 21 C -0.039 4.039 22 O -0.321 6.321 23 C -0.023 4.023 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.162 0.838 28 H 0.186 0.814 29 H 0.196 0.804 30 H 0.201 0.799 31 H 0.261 0.739 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.337 -4.207 -18.161 19.690 hybrid contribution -0.191 1.007 0.063 1.027 sum 6.146 -3.200 -18.098 19.379 Atomic orbital electron populations 1.69994 1.06901 1.27557 1.50366 1.25601 0.95665 1.02053 0.94278 0.85592 0.79389 0.79815 0.77466 1.19009 1.20922 1.20488 1.20810 0.93261 0.89803 1.49862 0.92419 1.21198 0.93372 0.94953 0.88960 1.22725 0.90672 0.98259 0.86559 1.86262 1.42755 1.80910 1.15066 1.20382 0.87550 0.73735 0.84492 1.90802 1.20392 1.47845 1.86197 1.21257 1.00885 1.10727 0.90786 1.20831 0.98419 0.88638 0.88991 1.19804 0.82576 1.12760 0.95310 1.22858 1.01761 1.00407 0.90796 1.22228 0.92039 1.08129 1.02510 1.25344 1.01561 1.00458 0.79896 1.84150 1.22042 1.68374 1.33489 1.24186 0.99357 0.97431 0.82924 1.89457 1.37495 1.77764 1.27415 1.23828 0.89177 0.94016 0.95262 0.92742 0.93206 0.93381 0.83765 0.81443 0.80352 0.79879 0.73897 0.89994 0.89747 0.90616 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.12 11.31 21.44 0.24 -50.87 16 2 C 0.02 1.31 5.25 84.65 0.44 1.76 16 3 Si 0.95 43.81 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.50 -27.26 7.92 25.60 0.20 -27.06 16 8 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 9 C 0.02 0.78 0.62 -52.23 -0.03 0.75 16 10 C 0.09 4.49 4.58 71.98 0.33 4.82 16 11 O -0.33 -15.59 9.70 -59.13 -0.57 -16.17 16 12 C 0.49 20.22 7.68 68.57 0.53 20.74 16 13 O -0.56 -24.90 15.88 19.14 0.30 -24.60 16 14 C -0.22 -7.09 9.55 22.45 0.21 -6.88 16 15 C 0.05 1.30 9.39 22.51 0.21 1.51 16 16 C -0.06 -1.26 6.84 23.03 0.16 -1.10 16 17 C -0.14 -2.28 10.90 22.71 0.25 -2.03 16 18 C -0.23 -2.89 10.87 22.06 0.24 -2.65 16 19 C 0.00 -0.05 12.06 67.11 0.81 0.76 16 20 O -0.18 -4.06 10.18 -6.13 -0.06 -4.13 16 21 C 0.04 1.62 8.35 72.27 0.60 2.22 16 22 O -0.40 -19.24 12.40 -148.98 -1.85 -21.09 16 23 C 0.05 2.62 7.91 72.27 0.57 3.19 16 24 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.05 2.72 7.21 -2.38 -0.02 2.70 16 26 H 0.05 2.14 8.03 -2.39 -0.02 2.12 16 27 H 0.14 4.47 7.72 -2.91 -0.02 4.45 16 28 H 0.17 4.03 7.45 -2.92 -0.02 4.01 16 29 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 31 H 0.25 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.08 3.07 8.03 -2.39 -0.02 3.05 16 33 H 0.08 3.51 8.09 -2.39 -0.02 3.49 16 34 H 0.08 4.00 7.36 -2.39 -0.02 3.98 16 35 H 0.07 2.99 8.10 -2.39 -0.02 2.97 16 Total: -1.00 -68.55 314.55 5.72 -62.83 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.10 Total: 12.15 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 4.53 Total: -3.97 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.24 Total: -50.87 kcal Atomic # 8 Polarization: -63.80 SS G_CDS: -2.18 Total: -65.98 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.55 5.72 -62.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123164095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.919 kcal (2) G-P(sol) polarization free energy of solvation -68.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds