Wall clock time and date at job start Tue Mar 31 2020 00:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99943 * 2 1 4 4 H 1.48494 * 109.46997 * 240.00469 * 3 2 1 5 5 H 1.48498 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46875 * 120.00384 * 3 2 1 7 7 C 1.38699 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99959 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00317 * 359.97438 * 7 2 1 10 10 C 1.35504 * 117.00428 * 185.06549 * 9 7 2 11 11 C 1.38836 * 120.16391 * 354.40163 * 10 9 7 12 12 C 1.38028 * 120.07563 * 180.27932 * 11 10 9 13 13 C 1.38589 * 120.41561 * 359.74156 * 12 11 10 14 14 C 1.37806 * 120.32932 * 359.97438 * 13 12 11 15 15 C 1.39727 * 119.91467 * 0.02562 * 14 13 12 16 16 C 1.47396 * 120.20149 * 179.97438 * 15 14 13 17 17 O 1.21513 * 120.00074 * 180.02562 * 16 15 14 18 18 O 1.34763 * 119.99857 * 0.02562 * 16 15 14 19 19 C 1.45199 * 116.99849 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47354 * 179.97438 * 19 18 16 21 21 H 1.08997 * 112.68126 * 314.66900 * 20 19 18 22 22 C 1.53367 * 113.39387 * 184.15149 * 20 19 18 23 23 C 1.53508 * 81.21457 * 218.59912 * 22 20 19 24 24 O 1.43345 * 88.44329 * 26.48469 * 23 22 20 25 25 H 0.96998 * 120.00124 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.96537 * 359.97438 * 11 10 9 27 27 H 1.08005 * 119.78915 * 179.76223 * 12 11 10 28 28 H 1.07992 * 119.83088 * 180.02562 * 13 12 11 29 29 H 1.07998 * 120.03839 * 180.02562 * 14 13 12 30 30 H 1.09003 * 109.47206 * 59.99663 * 19 18 16 31 31 H 1.09000 * 109.47029 * 299.99954 * 19 18 16 32 32 H 1.09000 * 114.57005 * 331.66463 * 22 20 19 33 33 H 1.09002 * 114.56544 * 105.48107 * 22 20 19 34 34 H 1.09008 * 113.39170 * 271.59198 * 23 22 20 35 35 H 1.08998 * 113.40134 * 141.38159 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0086 -1.2012 -0.0005 8 1 3.0886 -1.2012 -0.0010 9 8 1.3346 -2.3687 -0.0005 10 6 2.0685 -3.5028 0.1055 11 6 3.4554 -3.4402 0.0911 12 6 4.2012 -4.5971 0.1935 13 6 3.5746 -5.8272 0.3165 14 6 2.1992 -5.9084 0.3386 15 6 1.4307 -4.7459 0.2359 16 6 -0.0409 -4.8255 0.2582 17 8 -0.7056 -3.8123 0.1682 18 8 -0.6492 -6.0220 0.3784 19 6 -2.1011 -6.0248 0.3937 20 6 -2.6070 -7.4617 0.5351 21 1 -2.0862 -8.1573 -0.1229 22 6 -4.1343 -7.5798 0.4598 23 6 -3.8721 -8.6239 1.5541 24 8 -2.6773 -7.9091 1.8953 25 1 -0.4850 0.8400 0.0004 26 1 3.9513 -2.4856 -0.0052 27 1 5.2798 -4.5434 0.1779 28 1 4.1674 -6.7264 0.3964 29 1 1.7158 -6.8694 0.4350 30 1 -2.4751 -5.5982 -0.5370 31 1 -2.4567 -5.4296 1.2349 32 1 -4.6744 -6.6954 0.7976 33 1 -4.5115 -7.9893 -0.4773 34 1 -3.6815 -9.6231 1.1622 35 1 -4.6208 -8.6183 2.3462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123219549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:16 Heat of formation + Delta-G solvation = -89.755347 kcal Electronic energy + Delta-G solvation = -21040.158209 eV Core-core repulsion = 17585.096027 eV Total energy + Delta-G solvation = -3455.062182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.88090 -39.72364 -38.56835 -36.41520 -35.49871 -32.41175 -31.06385 -30.38842 -28.99625 -28.73322 -25.48903 -24.13369 -22.81839 -21.54234 -20.84903 -20.14095 -18.07031 -17.52683 -16.93332 -16.61284 -16.20118 -16.06693 -15.27050 -15.00600 -14.63067 -14.38773 -13.88740 -13.70295 -13.59268 -12.88420 -12.83885 -12.56316 -12.40077 -11.77468 -11.72667 -11.36026 -11.20012 -11.12555 -11.11325 -10.91195 -10.78989 -10.50587 -10.11486 -9.90210 -9.74747 -9.24285 -8.92749 -8.32108 -7.37876 -6.50939 -4.10940 1.60930 2.31299 3.08798 3.11374 3.13565 3.18441 3.46670 3.73303 3.89033 4.00106 4.55710 4.68712 4.87284 5.01316 5.07469 5.14026 5.14368 5.27483 5.44490 5.50656 5.58181 5.61194 5.68227 5.78802 5.90575 6.06837 6.12808 6.14443 6.57665 6.65271 6.89089 6.99737 7.10718 7.23054 7.30430 7.66129 7.87423 8.72436 8.89080 9.58332 10.62789 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.004646 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.666826 B = 6025.805566 C = 7366.704168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.404 4.404 8 H 0.096 0.904 9 O -0.125 6.125 10 C 0.191 3.809 11 C -0.239 4.239 12 C -0.043 4.043 13 C -0.234 4.234 14 C -0.015 4.015 15 C -0.216 4.216 16 C 0.498 3.502 17 O -0.477 6.477 18 O -0.364 6.364 19 C 0.068 3.932 20 C 0.064 3.936 21 H 0.102 0.898 22 C -0.181 4.181 23 C 0.027 3.973 24 O -0.361 6.361 25 H 0.273 0.727 26 H 0.134 0.866 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 -13.161 -0.217 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.479 4.479 8 H 0.113 0.887 9 O -0.023 6.023 10 C 0.132 3.868 11 C -0.258 4.258 12 C -0.062 4.062 13 C -0.253 4.253 14 C -0.033 4.033 15 C -0.219 4.219 16 C 0.343 3.657 17 O -0.364 6.364 18 O -0.283 6.283 19 C -0.007 4.007 20 C 0.006 3.994 21 H 0.119 0.881 22 C -0.218 4.218 23 C -0.050 4.050 24 O -0.280 6.280 25 H 0.083 0.917 26 H 0.152 0.848 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.142 0.858 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.240 -12.541 -0.023 12.953 hybrid contribution 0.340 0.830 -0.119 0.905 sum -2.900 -11.711 -0.142 12.066 Atomic orbital electron populations 1.70107 1.06054 1.28038 1.42180 1.25414 0.95835 0.99052 0.95995 0.85759 0.78788 0.79425 0.79344 1.19280 1.20104 1.19269 1.21490 0.91995 0.80942 1.53514 0.88684 1.84141 1.33812 1.11147 1.73228 1.19230 0.90034 0.86981 0.90585 1.21108 0.92991 0.99470 1.12253 1.20970 0.98778 0.92277 0.94178 1.20541 0.94093 0.97224 1.13490 1.20971 0.93560 0.96254 0.92548 1.18028 0.88342 0.92566 1.22951 1.21104 0.89198 0.80816 0.74534 1.90998 1.65850 1.35114 1.44429 1.86530 1.21413 1.34851 1.85512 1.23059 0.78789 0.95568 1.03279 1.23326 0.95320 0.95564 0.85202 0.88063 1.24425 0.95836 1.00785 1.00795 1.23525 0.88146 0.95889 0.97454 1.90018 1.45090 1.67144 1.25708 0.91678 0.84822 0.86943 0.86961 0.85752 0.89931 0.90490 0.87877 0.89585 0.90170 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.85 13.67 55.48 0.76 -24.09 16 2 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 3 Si 0.94 20.27 29.55 -169.99 -5.02 15.24 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.40 -11.34 9.49 30.90 0.29 -11.05 16 8 H 0.10 2.40 5.21 -52.49 -0.27 2.13 16 9 O -0.13 -3.69 7.84 -21.00 -0.16 -3.86 16 10 C 0.19 4.80 6.66 -38.58 -0.26 4.55 16 11 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 12 C -0.04 -0.77 10.03 -39.53 -0.40 -1.17 16 13 C -0.23 -4.00 10.02 -39.61 -0.40 -4.40 16 14 C -0.01 -0.28 9.61 -39.18 -0.38 -0.66 16 15 C -0.22 -4.96 5.89 -104.83 -0.62 -5.57 16 16 C 0.50 11.71 7.89 34.46 0.27 11.99 16 17 O -0.48 -13.15 14.96 -26.59 -0.40 -13.55 16 18 O -0.36 -7.10 9.47 -40.66 -0.39 -7.48 16 19 C 0.07 1.09 5.52 37.15 0.21 1.30 16 20 C 0.06 0.79 4.38 -39.30 -0.17 0.62 16 21 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 22 C -0.18 -1.61 8.21 -26.28 -0.22 -1.83 16 23 C 0.03 0.25 8.74 24.67 0.22 0.46 16 24 O -0.36 -5.10 12.56 -35.23 -0.44 -5.54 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 27 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.12 2.04 7.61 -52.49 -0.40 1.64 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.10 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -34.46 310.31 -6.79 -41.25 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.91 Total: 3.47 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.90 Total: -10.12 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.76 Total: -24.09 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.39 Total: -30.43 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.46 -6.79 -41.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123219549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.501 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds