Wall clock time and date at job start Tue Mar 31 2020 00:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99943 * 2 1 4 4 H 1.48494 * 109.46997 * 240.00469 * 3 2 1 5 5 H 1.48498 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46875 * 120.00384 * 3 2 1 7 7 C 1.38699 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99959 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00317 * 359.97438 * 7 2 1 10 10 C 1.35504 * 117.00428 * 185.06549 * 9 7 2 11 11 C 1.38836 * 120.16391 * 354.40163 * 10 9 7 12 12 C 1.38028 * 120.07563 * 180.27932 * 11 10 9 13 13 C 1.38589 * 120.41561 * 359.74156 * 12 11 10 14 14 C 1.37806 * 120.32932 * 359.97438 * 13 12 11 15 15 C 1.39727 * 119.91467 * 0.02562 * 14 13 12 16 16 C 1.47396 * 120.20149 * 179.97438 * 15 14 13 17 17 O 1.21513 * 120.00074 * 180.02562 * 16 15 14 18 18 O 1.34763 * 119.99857 * 0.02562 * 16 15 14 19 19 C 1.45199 * 116.99849 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47354 * 179.97438 * 19 18 16 21 21 H 1.08997 * 112.68126 * 314.66900 * 20 19 18 22 22 C 1.53367 * 113.39387 * 184.15149 * 20 19 18 23 23 C 1.53508 * 81.21457 * 218.59912 * 22 20 19 24 24 O 1.43345 * 88.44329 * 26.48469 * 23 22 20 25 25 H 0.96998 * 120.00124 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.96537 * 359.97438 * 11 10 9 27 27 H 1.08005 * 119.78915 * 179.76223 * 12 11 10 28 28 H 1.07992 * 119.83088 * 180.02562 * 13 12 11 29 29 H 1.07998 * 120.03839 * 180.02562 * 14 13 12 30 30 H 1.09003 * 109.47206 * 59.99663 * 19 18 16 31 31 H 1.09000 * 109.47029 * 299.99954 * 19 18 16 32 32 H 1.09000 * 114.57005 * 331.66463 * 22 20 19 33 33 H 1.09002 * 114.56544 * 105.48107 * 22 20 19 34 34 H 1.09008 * 113.39170 * 271.59198 * 23 22 20 35 35 H 1.08998 * 113.40134 * 141.38159 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0086 -1.2012 -0.0005 8 1 3.0886 -1.2012 -0.0010 9 8 1.3346 -2.3687 -0.0005 10 6 2.0685 -3.5028 0.1055 11 6 3.4554 -3.4402 0.0911 12 6 4.2012 -4.5971 0.1935 13 6 3.5746 -5.8272 0.3165 14 6 2.1992 -5.9084 0.3386 15 6 1.4307 -4.7459 0.2359 16 6 -0.0409 -4.8255 0.2582 17 8 -0.7056 -3.8123 0.1682 18 8 -0.6492 -6.0220 0.3784 19 6 -2.1011 -6.0248 0.3937 20 6 -2.6070 -7.4617 0.5351 21 1 -2.0862 -8.1573 -0.1229 22 6 -4.1343 -7.5798 0.4598 23 6 -3.8721 -8.6239 1.5541 24 8 -2.6773 -7.9091 1.8953 25 1 -0.4850 0.8400 0.0004 26 1 3.9513 -2.4856 -0.0052 27 1 5.2798 -4.5434 0.1779 28 1 4.1674 -6.7264 0.3964 29 1 1.7158 -6.8694 0.4350 30 1 -2.4751 -5.5982 -0.5370 31 1 -2.4567 -5.4296 1.2349 32 1 -4.6744 -6.6954 0.7976 33 1 -4.5115 -7.9893 -0.4773 34 1 -3.6815 -9.6231 1.1622 35 1 -4.6208 -8.6183 2.3462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123219549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:15 Heat of formation + Delta-G solvation = -113.186289 kcal Electronic energy + Delta-G solvation = -21041.174251 eV Core-core repulsion = 17585.096027 eV Total energy + Delta-G solvation = -3456.078224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91669 -41.39241 -40.32301 -38.14857 -37.28531 -34.38484 -32.57238 -31.56789 -30.65807 -29.81130 -27.46049 -25.52397 -24.14253 -23.22952 -21.97193 -21.56872 -19.92662 -19.26108 -18.41492 -17.96163 -17.70679 -17.09971 -16.65947 -16.47922 -16.21649 -16.14081 -15.57370 -15.37853 -15.13774 -14.44691 -14.17106 -14.01162 -13.65714 -13.58162 -13.03155 -12.95691 -12.73020 -12.53398 -12.42597 -12.20038 -12.13624 -11.93422 -11.68963 -11.59899 -11.05839 -10.85522 -10.80426 -9.94386 -9.13630 -8.49267 -6.20844 -0.06913 0.67511 1.32979 1.46052 1.51032 1.64579 1.70988 2.14089 2.80575 2.84290 3.13275 3.17535 3.35485 3.63235 3.89798 3.97924 4.06982 4.11759 4.23638 4.26912 4.43531 4.45723 4.51079 4.61985 4.80027 4.85444 4.91823 5.03608 5.10745 5.11039 5.17343 5.34342 5.45916 5.58462 5.64813 5.91955 6.10960 6.88529 6.94329 7.70136 8.70827 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.004646 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.666826 B = 6025.805566 C = 7366.704168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.020 4.020 3 Si 1.025 2.975 4 H -0.252 1.252 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.430 4.430 8 H 0.112 0.888 9 O -0.188 6.188 10 C 0.157 3.843 11 C -0.255 4.255 12 C -0.026 4.026 13 C -0.203 4.203 14 C -0.013 4.013 15 C -0.240 4.240 16 C 0.497 3.503 17 O -0.531 6.531 18 O -0.354 6.354 19 C 0.059 3.941 20 C 0.063 3.937 21 H 0.122 0.878 22 C -0.167 4.167 23 C 0.026 3.974 24 O -0.401 6.401 25 H 0.273 0.727 26 H 0.133 0.867 27 H 0.163 0.837 28 H 0.166 0.834 29 H 0.154 0.846 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 -16.234 -0.343 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.219 4.219 3 Si 0.842 3.158 4 H -0.175 1.175 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.506 4.506 8 H 0.130 0.870 9 O -0.090 6.090 10 C 0.102 3.898 11 C -0.274 4.274 12 C -0.044 4.044 13 C -0.222 4.222 14 C -0.031 4.031 15 C -0.243 4.243 16 C 0.345 3.655 17 O -0.422 6.422 18 O -0.271 6.271 19 C -0.015 4.015 20 C 0.005 3.995 21 H 0.139 0.861 22 C -0.204 4.204 23 C -0.050 4.050 24 O -0.321 6.321 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.180 0.820 28 H 0.184 0.816 29 H 0.171 0.829 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.760 -15.711 -0.144 15.730 hybrid contribution -0.309 1.300 -0.034 1.337 sum -1.070 -14.411 -0.178 14.452 Atomic orbital electron populations 1.70297 1.08461 1.28938 1.46241 1.26814 0.96757 1.03211 0.95166 0.84587 0.77350 0.73550 0.80271 1.17549 1.19820 1.17767 1.22085 0.92978 0.81441 1.54076 0.87036 1.84143 1.35503 1.12346 1.76984 1.19973 0.91923 0.86870 0.91043 1.21307 0.91681 1.01334 1.13127 1.21550 1.01094 0.90917 0.90825 1.21224 0.93460 0.98882 1.08592 1.21379 0.94549 0.95736 0.91425 1.18496 0.88530 0.93584 1.23643 1.21461 0.89847 0.81038 0.73159 1.90980 1.67098 1.37129 1.46966 1.86509 1.23488 1.32536 1.84608 1.23442 0.76745 0.98714 1.02644 1.23535 0.97845 0.92854 0.85256 0.86082 1.24396 0.92847 1.00768 1.02369 1.23817 0.86636 0.96618 0.97918 1.89988 1.47356 1.68190 1.26591 0.91811 0.84958 0.81988 0.81610 0.82878 0.89604 0.92644 0.88350 0.86501 0.87574 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.27 13.67 21.62 0.30 -57.98 16 2 C -0.02 -1.15 5.49 84.85 0.47 -0.69 16 3 Si 1.02 43.24 29.55 68.60 2.03 45.27 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.43 -25.64 9.49 67.93 0.64 -24.99 16 8 H 0.11 5.87 5.21 -2.91 -0.02 5.85 16 9 O -0.19 -11.88 7.84 1.07 0.01 -11.87 16 10 C 0.16 8.19 6.66 22.92 0.15 8.34 16 11 C -0.26 -10.77 9.16 22.36 0.20 -10.57 16 12 C -0.03 -0.80 10.03 22.30 0.22 -0.58 16 13 C -0.20 -5.78 10.02 22.25 0.22 -5.56 16 14 C -0.01 -0.44 9.61 22.53 0.22 -0.23 16 15 C -0.24 -11.17 5.89 -20.00 -0.12 -11.29 16 16 C 0.50 24.59 7.89 70.23 0.55 25.14 16 17 O -0.53 -31.75 14.96 26.79 0.40 -31.35 16 18 O -0.35 -14.07 9.47 -56.73 -0.54 -14.61 16 19 C 0.06 1.96 5.52 71.98 0.40 2.36 16 20 C 0.06 1.49 4.38 22.45 0.10 1.59 16 21 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 22 C -0.17 -2.64 8.21 30.89 0.25 -2.39 16 23 C 0.03 0.41 8.74 63.89 0.56 0.97 16 24 O -0.40 -10.97 12.56 -148.98 -1.87 -12.84 16 25 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 26 H 0.13 5.51 5.64 -2.91 -0.02 5.49 16 27 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 28 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.15 4.39 7.61 -2.91 -0.02 4.37 16 30 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.10 1.66 8.13 -2.39 -0.02 1.64 16 33 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -85.35 310.31 5.31 -80.04 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.11 Total: 21.22 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 3.88 Total: -17.88 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.30 Total: -57.98 kcal Atomic # 8 Polarization: -68.67 SS G_CDS: -2.00 Total: -70.67 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -85.35 5.31 -80.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123219549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.148 kcal (2) G-P(sol) polarization free energy of solvation -85.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds