Wall clock time and date at job start Tue Mar 31 2020 00:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47115 * 270.00120 * 3 2 1 5 5 H 1.48500 * 109.46565 * 30.00436 * 3 2 1 6 6 H 1.48502 * 109.46982 * 150.00273 * 3 2 1 7 7 C 1.38956 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 359.97438 * 7 2 1 9 9 N 1.37100 * 119.99959 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99445 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00495 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99414 * 180.02562 * 10 9 7 13 13 H 1.08994 * 109.32814 * 59.78025 * 12 10 9 14 14 C 1.52906 * 109.39570 * 179.56266 * 12 10 9 15 15 C 1.50659 * 109.53504 * 71.51311 * 14 12 10 16 16 C 1.38098 * 120.16416 * 213.99351 * 15 14 12 17 17 C 1.38468 * 120.00628 * 180.02562 * 16 15 14 18 18 F 1.35095 * 119.94953 * 179.97438 * 17 16 15 19 19 C 1.38495 * 120.09678 * 359.93548 * 17 16 15 20 20 C 1.38102 * 120.06358 * 0.04779 * 19 17 16 21 21 C 1.38832 * 119.83967 * 33.96759 * 15 14 12 22 22 N 1.39945 * 119.99116 * 359.75573 * 21 15 14 23 23 C 1.34564 * 120.43565 * 341.97048 * 22 21 15 24 24 O 1.21293 * 119.62187 * 178.97999 * 23 22 21 25 25 H 0.96998 * 119.99776 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99939 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.45641 * 191.53091 * 14 12 10 28 28 H 1.09004 * 109.45887 * 311.48996 * 14 12 10 29 29 H 1.07994 * 119.99291 * 359.97438 * 16 15 14 30 30 H 1.07995 * 119.96903 * 180.02562 * 19 17 16 31 31 H 1.07998 * 120.03977 * 179.97438 * 20 19 17 32 32 H 0.96999 * 119.78864 * 161.73617 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4210 -0.0011 12 6 5.5607 -2.3707 -0.0011 13 1 5.9214 -1.8530 0.8877 14 6 6.0684 -3.8129 0.0099 15 6 5.8111 -4.4479 -1.3318 16 6 5.5042 -5.7917 -1.4162 17 6 5.2687 -6.3720 -2.6512 18 9 4.9691 -7.6868 -2.7324 19 6 5.3392 -5.6064 -3.8031 20 6 5.6455 -4.2622 -3.7227 21 6 5.8825 -3.6785 -2.4853 22 7 6.1879 -2.3155 -2.3992 23 6 6.0605 -1.6609 -1.2304 24 8 6.3471 -0.4839 -1.1682 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3634 -0.0007 27 1 7.1389 -3.8194 0.2154 28 1 5.5468 -4.3757 0.7841 29 1 5.4486 -6.3901 -0.5189 30 1 5.1548 -6.0610 -4.7652 31 1 5.7007 -3.6656 -4.6212 32 1 6.4968 -1.8402 -3.1863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136560103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:18 Heat of formation + Delta-G solvation = -89.881559 kcal Electronic energy + Delta-G solvation = -21457.428896 eV Core-core repulsion = 17911.193687 eV Total energy + Delta-G solvation = -3546.235209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -48.76818 -41.18038 -38.64023 -38.12830 -35.03514 -34.34101 -33.49227 -31.80345 -30.33392 -29.04351 -25.92049 -24.03986 -22.99339 -22.76452 -20.50959 -19.15709 -18.36227 -18.02371 -17.40853 -16.84962 -16.18752 -15.51529 -15.47380 -15.25769 -15.07517 -14.48456 -14.02076 -13.64038 -13.52254 -13.40640 -13.19862 -12.89511 -12.81861 -12.38827 -12.32876 -11.75306 -11.63957 -11.22654 -10.97060 -10.60329 -10.46190 -10.04685 -10.01236 -9.66711 -8.97986 -8.67708 -8.28568 -7.89734 -6.41018 -3.92520 1.05569 1.20290 2.45801 2.95348 3.05160 3.10758 3.15558 3.53739 3.62401 4.05681 4.25753 4.33565 4.48134 4.59534 4.69200 4.95325 5.05859 5.15775 5.24106 5.35844 5.52548 5.73013 5.81024 5.87810 5.96502 5.99221 6.12142 6.28385 6.65141 6.80970 7.11606 7.44917 7.95428 8.02619 8.45428 8.82039 9.30715 9.64781 10.70702 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.022084 B = 0.005837 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.554468 B = 4796.089373 C = 5288.606488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.048 3.952 3 Si 0.873 3.127 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.309 4.309 8 H 0.123 0.877 9 N -0.575 5.575 10 C 0.449 3.551 11 O -0.559 6.559 12 C -0.126 4.126 13 H 0.128 0.872 14 C -0.058 4.058 15 C -0.064 4.064 16 C -0.106 4.106 17 C 0.076 3.924 18 F -0.142 7.142 19 C -0.129 4.129 20 C -0.123 4.123 21 C 0.148 3.852 22 N -0.658 5.658 23 C 0.534 3.466 24 O -0.523 6.523 25 H 0.276 0.724 26 H 0.376 0.624 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.861 -7.424 -5.053 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.157 4.157 3 Si 0.699 3.301 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.212 5.212 10 C 0.234 3.766 11 O -0.442 6.442 12 C -0.151 4.151 13 H 0.146 0.854 14 C -0.096 4.096 15 C -0.066 4.066 16 C -0.125 4.125 17 C 0.056 3.944 18 F -0.121 7.121 19 C -0.148 4.148 20 C -0.143 4.143 21 C 0.052 3.948 22 N -0.302 5.302 23 C 0.322 3.678 24 O -0.398 6.398 25 H 0.086 0.914 26 H 0.210 0.790 27 H 0.105 0.895 28 H 0.124 0.876 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 14.310 -7.404 -4.814 16.816 hybrid contribution 0.481 1.417 -0.449 1.562 sum 14.791 -5.987 -5.263 16.802 Atomic orbital electron populations 1.69618 1.05663 1.27839 1.47924 1.25048 0.95502 0.98122 0.96999 0.86738 0.80074 0.83859 0.79417 1.19390 1.19820 1.18974 1.19460 0.78916 0.96793 1.48551 0.85959 1.42290 1.07809 1.06349 1.64793 1.18934 0.86389 0.85042 0.86283 1.90591 1.68196 1.30567 1.54809 1.21566 0.98108 0.98131 0.97263 0.85440 1.20304 1.01220 0.92884 0.95169 1.19189 1.00759 0.92768 0.93923 1.20733 1.00415 0.94518 0.96836 1.17539 1.04052 0.78369 0.94446 1.91477 1.91064 1.32423 1.97146 1.20834 1.02418 0.93708 0.97871 1.20522 1.02921 0.94831 0.96069 1.17635 0.99716 0.83198 0.94227 1.43475 1.65376 1.08494 1.12862 1.20447 0.75990 0.86782 0.84605 1.90773 1.48548 1.15494 1.84975 0.91364 0.79029 0.89490 0.87609 0.84117 0.84460 0.84626 0.75075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.30 13.96 55.50 0.77 -24.53 16 2 C 0.05 1.32 5.50 -17.47 -0.10 1.23 16 3 Si 0.87 20.15 27.74 -169.99 -4.71 15.43 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.26 -5.80 6.52 56.52 0.37 -5.43 16 7 C -0.31 -8.73 10.16 -14.93 -0.15 -8.88 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 9 N -0.57 -14.07 4.99 -10.96 -0.05 -14.12 16 10 C 0.45 10.01 6.87 -10.98 -0.08 9.94 16 11 O -0.56 -14.05 14.74 5.55 0.08 -13.97 16 12 C -0.13 -2.10 2.86 -93.07 -0.27 -2.37 16 13 H 0.13 1.85 8.14 -51.93 -0.42 1.43 16 14 C -0.06 -0.80 5.10 -27.95 -0.14 -0.94 16 15 C -0.06 -0.92 4.71 -104.47 -0.49 -1.41 16 16 C -0.11 -1.45 9.67 -39.55 -0.38 -1.83 16 17 C 0.08 1.02 7.30 -39.40 -0.29 0.73 16 18 F -0.14 -1.94 17.26 2.25 0.04 -1.90 16 19 C -0.13 -1.53 10.02 -39.54 -0.40 -1.93 16 20 C -0.12 -1.46 9.92 -39.40 -0.39 -1.85 16 21 C 0.15 2.07 6.49 -83.71 -0.54 1.53 16 22 N -0.66 -9.25 5.37 -9.98 -0.05 -9.30 16 23 C 0.53 8.97 6.75 -11.18 -0.08 8.89 16 24 O -0.52 -9.94 17.91 5.55 0.10 -9.84 16 25 H 0.28 7.38 8.31 -40.82 -0.34 7.05 16 26 H 0.38 8.69 5.64 -40.82 -0.23 8.46 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.11 1.45 7.62 -51.93 -0.40 1.06 16 29 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.41 4.70 8.83 -40.82 -0.36 4.34 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -33.06 286.30 -5.47 -38.53 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -2.66 Total: 12.28 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -3.30 Total: 3.11 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.67 Total: -47.95 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.18 Total: -23.81 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.71 Total: 15.43 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.06 -5.47 -38.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136560103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.356 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds