Wall clock time and date at job start Tue Mar 31 2020 00:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47115 * 270.00120 * 3 2 1 5 5 H 1.48500 * 109.46565 * 30.00436 * 3 2 1 6 6 H 1.48502 * 109.46982 * 150.00273 * 3 2 1 7 7 C 1.38956 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 359.97438 * 7 2 1 9 9 N 1.37100 * 119.99959 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99445 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00495 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99414 * 180.02562 * 10 9 7 13 13 H 1.08994 * 109.32814 * 59.78025 * 12 10 9 14 14 C 1.52906 * 109.39570 * 179.56266 * 12 10 9 15 15 C 1.50659 * 109.53504 * 71.51311 * 14 12 10 16 16 C 1.38098 * 120.16416 * 213.99351 * 15 14 12 17 17 C 1.38468 * 120.00628 * 180.02562 * 16 15 14 18 18 F 1.35095 * 119.94953 * 179.97438 * 17 16 15 19 19 C 1.38495 * 120.09678 * 359.93548 * 17 16 15 20 20 C 1.38102 * 120.06358 * 0.04779 * 19 17 16 21 21 C 1.38832 * 119.83967 * 33.96759 * 15 14 12 22 22 N 1.39945 * 119.99116 * 359.75573 * 21 15 14 23 23 C 1.34564 * 120.43565 * 341.97048 * 22 21 15 24 24 O 1.21293 * 119.62187 * 178.97999 * 23 22 21 25 25 H 0.96998 * 119.99776 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99939 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.45641 * 191.53091 * 14 12 10 28 28 H 1.09004 * 109.45887 * 311.48996 * 14 12 10 29 29 H 1.07994 * 119.99291 * 359.97438 * 16 15 14 30 30 H 1.07995 * 119.96903 * 180.02562 * 19 17 16 31 31 H 1.07998 * 120.03977 * 179.97438 * 20 19 17 32 32 H 0.96999 * 119.78864 * 161.73617 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5458 1.4400 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4210 -0.0011 12 6 5.5607 -2.3707 -0.0011 13 1 5.9214 -1.8530 0.8877 14 6 6.0684 -3.8129 0.0099 15 6 5.8111 -4.4479 -1.3318 16 6 5.5042 -5.7917 -1.4162 17 6 5.2687 -6.3720 -2.6512 18 9 4.9691 -7.6868 -2.7324 19 6 5.3392 -5.6064 -3.8031 20 6 5.6455 -4.2622 -3.7227 21 6 5.8825 -3.6785 -2.4853 22 7 6.1879 -2.3155 -2.3992 23 6 6.0605 -1.6609 -1.2304 24 8 6.3471 -0.4839 -1.1682 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3634 -0.0007 27 1 7.1389 -3.8194 0.2154 28 1 5.5468 -4.3757 0.7841 29 1 5.4486 -6.3901 -0.5189 30 1 5.1548 -6.0610 -4.7652 31 1 5.7007 -3.6656 -4.6212 32 1 6.4968 -1.8402 -3.1863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136560103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:17 Heat of formation + Delta-G solvation = -113.905577 kcal Electronic energy + Delta-G solvation = -21458.470655 eV Core-core repulsion = 17911.193687 eV Total energy + Delta-G solvation = -3547.276969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.82208 -42.43514 -40.04509 -39.65030 -36.38281 -36.00531 -34.84338 -33.84783 -31.51214 -30.13615 -27.57116 -25.57448 -24.09835 -23.84754 -22.09786 -20.97459 -19.86976 -19.13974 -18.72611 -18.26005 -17.36375 -17.07481 -16.70326 -16.55544 -16.48157 -15.98524 -15.31682 -15.18459 -14.89133 -14.68579 -14.59955 -14.37648 -14.10107 -14.00207 -13.58593 -13.09899 -13.00563 -12.78982 -12.50305 -12.07022 -11.99568 -11.63386 -11.57854 -11.30724 -10.58998 -10.34833 -9.90915 -8.97939 -8.50643 -6.10524 -0.02662 0.21711 1.12948 1.25014 1.28171 1.35444 1.68594 1.97855 2.13024 2.56794 2.73101 2.99744 3.21930 3.32359 3.53214 3.58065 3.82540 3.98546 4.10730 4.23471 4.30072 4.62546 4.68834 4.83303 4.94510 5.00225 5.14487 5.24312 5.42670 5.56794 5.75052 5.84708 6.00088 6.44221 6.74698 6.78597 7.25636 7.74839 8.65722 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.022084 B = 0.005837 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.554468 B = 4796.089373 C = 5288.606488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.000 4.000 3 Si 0.945 3.055 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.244 1.244 7 C -0.327 4.327 8 H 0.069 0.931 9 N -0.585 5.585 10 C 0.458 3.542 11 O -0.589 6.589 12 C -0.121 4.121 13 H 0.154 0.846 14 C -0.057 4.057 15 C -0.082 4.082 16 C -0.119 4.119 17 C 0.063 3.937 18 F -0.147 7.147 19 C -0.127 4.127 20 C -0.116 4.116 21 C 0.126 3.874 22 N -0.644 5.644 23 C 0.533 3.467 24 O -0.546 6.546 25 H 0.282 0.718 26 H 0.385 0.615 27 H 0.128 0.872 28 H 0.101 0.899 29 H 0.149 0.851 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.304 -6.685 -5.874 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.201 4.201 3 Si 0.766 3.234 4 H -0.187 1.187 5 H -0.187 1.187 6 H -0.168 1.168 7 C -0.456 4.456 8 H 0.087 0.913 9 N -0.225 5.225 10 C 0.244 3.756 11 O -0.473 6.473 12 C -0.145 4.145 13 H 0.172 0.828 14 C -0.094 4.094 15 C -0.085 4.085 16 C -0.138 4.138 17 C 0.043 3.957 18 F -0.125 7.125 19 C -0.146 4.146 20 C -0.136 4.136 21 C 0.031 3.969 22 N -0.290 5.290 23 C 0.321 3.679 24 O -0.423 6.423 25 H 0.092 0.908 26 H 0.220 0.780 27 H 0.146 0.854 28 H 0.120 0.880 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.185 0.815 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 16.774 -6.704 -5.656 18.929 hybrid contribution -0.275 0.954 -0.243 1.023 sum 16.499 -5.750 -5.899 18.441 Atomic orbital electron populations 1.69754 1.07602 1.29325 1.49324 1.25886 0.96315 1.01926 0.95986 0.85640 0.79458 0.78398 0.79946 1.18708 1.18750 1.16770 1.19056 0.80828 0.95302 1.50432 0.91266 1.42195 1.06374 1.07519 1.66402 1.19944 0.88892 0.83794 0.82974 1.90579 1.70049 1.31716 1.54950 1.21594 0.93190 1.00827 0.98882 0.82805 1.20410 1.03543 0.90544 0.94876 1.19400 1.01351 0.93208 0.94536 1.20903 1.00691 0.94689 0.97542 1.17806 1.04357 0.78430 0.95116 1.91466 1.91141 1.32739 1.97187 1.21185 1.01228 0.93653 0.98558 1.20896 1.01179 0.95039 0.96482 1.17879 1.00940 0.83068 0.95061 1.43322 1.64434 1.08602 1.12596 1.20317 0.76092 0.86405 0.85113 1.90765 1.49947 1.16255 1.85361 0.90847 0.77957 0.85413 0.88018 0.83309 0.81741 0.81543 0.73502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.94 13.96 21.66 0.30 -54.64 16 2 C 0.00 -0.03 5.50 84.93 0.47 0.44 16 3 Si 0.94 41.08 27.74 68.60 1.90 42.98 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.24 -9.69 6.52 99.48 0.65 -9.04 16 7 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 8 H 0.07 4.69 7.39 -2.91 -0.02 4.67 16 9 N -0.59 -28.59 4.99 -306.98 -1.53 -30.13 16 10 C 0.46 20.26 6.87 87.66 0.60 20.86 16 11 O -0.59 -30.14 14.74 -3.06 -0.05 -30.19 16 12 C -0.12 -3.78 2.86 -12.38 -0.04 -3.81 16 13 H 0.15 4.02 8.14 -2.39 -0.02 4.00 16 14 C -0.06 -1.42 5.10 29.80 0.15 -1.27 16 15 C -0.08 -2.24 4.71 -19.77 -0.09 -2.33 16 16 C -0.12 -3.14 9.67 22.29 0.22 -2.92 16 17 C 0.06 1.60 7.30 22.39 0.16 1.76 16 18 F -0.15 -3.85 17.26 44.97 0.78 -3.08 16 19 C -0.13 -2.71 10.02 22.30 0.22 -2.48 16 20 C -0.12 -2.43 9.92 22.38 0.22 -2.21 16 21 C 0.13 3.24 6.49 38.14 0.25 3.49 16 22 N -0.64 -16.49 5.37 -304.00 -1.63 -18.12 16 23 C 0.53 16.63 6.75 87.63 0.59 17.22 16 24 O -0.55 -19.38 17.91 -3.07 -0.05 -19.43 16 25 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 26 H 0.39 17.26 5.64 -92.71 -0.52 16.74 16 27 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.10 2.65 7.62 -2.39 -0.02 2.63 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.42 8.50 8.83 -92.71 -0.82 7.68 16 Total: -1.00 -74.13 286.30 3.13 -71.00 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.20 Total: 31.11 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 3.61 Total: 10.49 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -2.86 Total: -102.89 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.10 Total: -49.62 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.90 Total: 42.98 kcal Total: -74.13 3.13 -71.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136560103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.905 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds