Wall clock time and date at job start Tue Mar 31 2020 00:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36440 * 127.12220 * 2 1 4 4 N 1.38990 * 126.45812 * 0.02562 * 3 2 1 5 5 C 1.34777 * 119.99454 * 179.70681 * 4 3 2 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99675 * 179.72571 * 5 4 3 8 8 C 1.50703 * 109.47148 * 180.28037 * 7 5 4 9 9 H 1.08001 * 120.00037 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00214 * 179.97438 * 8 7 5 11 11 N 1.31516 * 120.00297 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99907 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47496 * 89.99791 * 12 10 8 14 14 H 1.48503 * 109.47098 * 209.99926 * 12 10 8 15 15 H 1.48504 * 109.46915 * 329.99781 * 12 10 8 16 16 N 1.31147 * 107.07197 * 179.73685 * 3 2 1 17 17 N 1.28530 * 109.83722 * 0.23005 * 16 3 2 18 18 C 1.30368 * 110.02153 * 359.97438 * 17 16 3 19 19 C 1.50701 * 126.34301 * 180.02562 * 18 17 16 20 20 F 1.39903 * 109.46837 * 14.96899 * 19 18 17 21 21 F 1.39897 * 109.47175 * 134.97419 * 19 18 17 22 22 F 1.39899 * 109.46588 * 254.97449 * 19 18 17 23 23 H 1.09001 * 109.47165 * 89.99607 * 1 2 3 24 24 H 1.09002 * 109.46648 * 209.99992 * 1 2 3 25 25 H 1.09002 * 109.47029 * 329.99378 * 1 2 3 26 26 H 0.96990 * 120.00644 * 359.71418 * 4 3 2 27 27 H 1.09003 * 109.47174 * 300.27143 * 7 5 4 28 28 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 29 29 H 0.97001 * 119.99846 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2884 1.0879 0.0000 4 7 1.8955 2.4211 0.0005 5 6 2.8247 3.3974 0.0064 6 8 4.0036 3.1126 0.0108 7 6 2.3988 4.8429 0.0007 8 6 3.6198 5.7264 0.0021 9 1 4.6055 5.2852 0.0071 10 6 3.4784 7.0978 -0.0029 11 7 4.5439 7.8688 -0.0012 12 14 1.7734 7.8610 -0.0123 13 1 1.3159 8.0678 1.3852 14 1 1.8198 9.1676 -0.7165 15 1 0.8291 6.9542 -0.7133 16 7 3.5204 0.6383 0.0058 17 7 3.5156 -0.6470 0.0044 18 6 2.2891 -1.0888 -0.0016 19 6 1.8602 -2.5335 -0.0045 20 9 2.9475 -3.3433 0.3409 21 9 0.8294 -2.7158 0.9236 22 9 1.4058 -2.8824 -1.2808 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 0.9528 2.6490 -0.0033 27 1 1.8063 5.0436 -0.8920 28 1 1.8003 5.0489 0.8880 29 1 4.4443 8.8337 -0.0051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189383.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:02 Heat of formation + Delta-G solvation = -85.014001 kcal Electronic energy + Delta-G solvation = -21366.865982 eV Core-core repulsion = 17298.905068 eV Total energy + Delta-G solvation = -4067.960915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.60874 -48.17474 -48.05071 -43.35477 -39.26338 -35.70200 -34.54976 -33.03715 -31.14674 -29.77345 -28.11160 -26.47774 -24.33319 -22.45149 -21.90047 -20.06873 -19.04362 -18.82673 -18.63917 -17.89719 -17.12541 -16.86254 -16.16648 -15.64133 -15.05842 -14.84742 -14.68271 -14.53999 -14.42638 -14.30305 -14.20021 -13.84281 -13.67973 -13.41950 -12.92232 -12.38074 -12.09216 -11.82250 -11.11049 -11.00901 -10.71211 -10.63956 -10.55805 -10.18107 -9.45011 -9.25241 -8.73075 -8.67028 -6.15874 -4.18471 1.13429 1.34985 2.14256 2.48646 2.94705 3.13606 3.15596 3.18657 3.25779 3.34118 3.56842 3.89569 4.07111 4.27074 4.55527 4.67709 4.85174 5.02751 5.13124 5.34740 5.63612 5.78695 6.30347 6.58266 6.63076 7.13996 7.49773 8.33000 8.43096 8.62526 9.03594 9.39111 10.96646 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.043968 B = 0.003837 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.677132 B = 7294.946203 C = 7746.505455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.478 5.478 3 C 0.453 3.547 4 N -0.646 5.646 5 C 0.516 3.484 6 O -0.451 6.451 7 C -0.016 4.016 8 C -0.522 4.522 9 H 0.096 0.904 10 C 0.073 3.927 11 N -0.889 5.889 12 Si 0.875 3.125 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.267 1.267 16 N -0.264 5.264 17 N -0.203 5.203 18 C 0.049 3.951 19 C 0.578 3.422 20 F -0.146 7.146 21 F -0.170 7.170 22 F -0.164 7.164 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.415 0.585 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.696 -18.488 0.001 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.178 5.178 3 C 0.099 3.901 4 N -0.302 5.302 5 C 0.304 3.696 6 O -0.315 6.315 7 C -0.055 4.055 8 C -0.560 4.560 9 H 0.114 0.886 10 C -0.130 4.130 11 N -0.527 5.527 12 Si 0.701 3.299 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.191 1.191 16 N -0.113 5.113 17 N -0.046 5.046 18 C -0.218 4.218 19 C 0.521 3.479 20 F -0.127 7.127 21 F -0.151 7.151 22 F -0.146 7.146 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.252 0.748 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.224 -18.377 0.012 22.641 hybrid contribution -3.068 0.461 -0.002 3.102 sum -16.292 -17.916 0.010 24.216 Atomic orbital electron populations 1.22381 0.74490 1.06322 1.05060 1.45858 1.08842 1.04553 1.58588 1.21727 0.86575 0.83428 0.98372 1.43837 1.12445 0.98847 1.75093 1.22111 0.85503 0.87378 0.74589 1.90778 1.16795 1.82193 1.41704 1.19719 1.00740 0.85875 0.99213 1.20936 0.92949 0.90161 1.51990 0.88633 1.24948 0.96638 0.96895 0.94523 1.69880 1.28646 1.04612 1.49547 0.86894 0.84956 0.79372 0.78629 1.20000 1.20909 1.19140 1.75290 1.12921 1.00066 1.22978 1.74287 1.15239 1.04100 1.10989 1.23763 0.89776 0.89381 1.18836 1.16261 0.74985 0.82473 0.74200 1.93289 1.54033 1.73608 1.91807 1.93212 1.59746 1.95746 1.66392 1.93275 1.89105 1.92828 1.39368 0.89072 0.88068 0.88361 0.74842 0.92834 0.93279 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.90 59.84 0.65 1.01 15 2 N -0.48 -5.72 3.20 -121.39 -0.39 -6.11 15 3 C 0.45 7.27 8.54 -318.38 -2.72 4.55 15 4 N -0.65 -9.60 5.40 -12.41 -0.07 -9.67 15 5 C 0.52 10.53 7.78 -10.98 -0.09 10.44 15 6 O -0.45 -11.46 14.19 5.55 0.08 -11.39 15 7 C -0.02 -0.33 4.53 -29.03 -0.13 -0.46 15 8 C -0.52 -14.42 9.48 -34.44 -0.33 -14.75 15 9 H 0.10 3.05 7.00 -52.49 -0.37 2.68 15 10 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 11 N -0.89 -26.63 13.96 55.43 0.77 -25.85 15 12 Si 0.87 19.43 27.47 -169.99 -4.67 14.76 15 13 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 15 H -0.27 -5.34 6.54 56.52 0.37 -4.97 15 16 N -0.26 -5.30 10.45 30.38 0.32 -4.98 15 17 N -0.20 -3.62 12.02 32.97 0.40 -3.22 15 18 C 0.05 0.68 7.35 -154.13 -1.13 -0.46 15 19 C 0.58 6.22 3.37 36.01 0.12 6.34 15 20 F -0.15 -1.72 17.18 2.25 0.04 -1.68 15 21 F -0.17 -1.52 15.52 2.25 0.03 -1.49 15 22 F -0.16 -1.65 17.30 2.25 0.04 -1.61 15 23 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 15 24 H 0.10 0.48 6.36 -51.93 -0.33 0.15 15 25 H 0.10 0.37 7.66 -51.93 -0.40 -0.02 15 26 H 0.41 4.03 8.16 -40.82 -0.33 3.69 15 27 H 0.05 1.03 7.20 -51.93 -0.37 0.66 15 28 H 0.05 0.93 7.57 -51.93 -0.39 0.54 15 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -35.48 275.26 -4.80 -40.28 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -1.78 Total: -1.78 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -3.72 Total: 8.59 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 1.03 Total: -49.82 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.11 Total: -4.78 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.67 Total: 14.76 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -35.48 -4.80 -40.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189383.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.736 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds