Wall clock time and date at job start Tue Mar 31 2020 00:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36440 * 127.12220 * 2 1 4 4 N 1.38990 * 126.45812 * 0.02562 * 3 2 1 5 5 C 1.34777 * 119.99454 * 179.70681 * 4 3 2 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99675 * 179.72571 * 5 4 3 8 8 C 1.50703 * 109.47148 * 180.28037 * 7 5 4 9 9 H 1.08001 * 120.00037 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00214 * 179.97438 * 8 7 5 11 11 N 1.31516 * 120.00297 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99907 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47496 * 89.99791 * 12 10 8 14 14 H 1.48503 * 109.47098 * 209.99926 * 12 10 8 15 15 H 1.48504 * 109.46915 * 329.99781 * 12 10 8 16 16 N 1.31147 * 107.07197 * 179.73685 * 3 2 1 17 17 N 1.28530 * 109.83722 * 0.23005 * 16 3 2 18 18 C 1.30368 * 110.02153 * 359.97438 * 17 16 3 19 19 C 1.50701 * 126.34301 * 180.02562 * 18 17 16 20 20 F 1.39903 * 109.46837 * 14.96899 * 19 18 17 21 21 F 1.39897 * 109.47175 * 134.97419 * 19 18 17 22 22 F 1.39899 * 109.46588 * 254.97449 * 19 18 17 23 23 H 1.09001 * 109.47165 * 89.99607 * 1 2 3 24 24 H 1.09002 * 109.46648 * 209.99992 * 1 2 3 25 25 H 1.09002 * 109.47029 * 329.99378 * 1 2 3 26 26 H 0.96990 * 120.00644 * 359.71418 * 4 3 2 27 27 H 1.09003 * 109.47174 * 300.27143 * 7 5 4 28 28 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 29 29 H 0.97001 * 119.99846 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2884 1.0879 0.0000 4 7 1.8955 2.4211 0.0005 5 6 2.8247 3.3974 0.0064 6 8 4.0036 3.1126 0.0108 7 6 2.3988 4.8429 0.0007 8 6 3.6198 5.7264 0.0021 9 1 4.6055 5.2852 0.0071 10 6 3.4784 7.0978 -0.0029 11 7 4.5439 7.8688 -0.0012 12 14 1.7734 7.8610 -0.0123 13 1 1.3159 8.0678 1.3852 14 1 1.8198 9.1676 -0.7165 15 1 0.8291 6.9542 -0.7133 16 7 3.5204 0.6383 0.0058 17 7 3.5156 -0.6470 0.0044 18 6 2.2891 -1.0888 -0.0016 19 6 1.8602 -2.5335 -0.0045 20 9 2.9475 -3.3433 0.3409 21 9 0.8294 -2.7158 0.9236 22 9 1.4058 -2.8824 -1.2808 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 0.9528 2.6490 -0.0033 27 1 1.8063 5.0436 -0.8920 28 1 1.8003 5.0489 0.8880 29 1 4.4443 8.8337 -0.0051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189383.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:00 Heat of formation + Delta-G solvation = -110.069090 kcal Electronic energy + Delta-G solvation = -21367.952453 eV Core-core repulsion = 17298.905068 eV Total energy + Delta-G solvation = -4069.047385 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.47543 -49.00089 -48.94529 -44.51837 -40.82040 -36.85253 -35.84030 -35.04637 -32.53570 -31.41621 -28.90747 -27.49846 -26.06668 -23.76629 -23.07839 -21.46192 -19.91374 -19.75735 -19.68851 -19.04454 -19.00520 -17.93569 -17.47672 -17.06865 -16.30507 -16.24221 -15.78435 -15.70257 -15.37981 -15.21337 -15.12976 -15.06533 -14.56607 -14.39601 -14.25070 -13.64720 -13.62733 -13.00577 -12.84331 -12.59290 -12.33515 -11.88590 -11.78535 -11.55506 -11.51682 -10.92998 -10.76590 -9.98230 -8.24245 -6.35507 0.02286 0.28821 1.13613 1.17255 1.43863 1.49542 1.58972 1.85717 1.90960 2.21173 2.41322 2.67996 3.01300 3.09409 3.26916 3.61576 3.86944 4.18234 4.26139 4.45153 4.50894 4.65796 4.73800 5.00974 5.42179 5.46034 6.03547 6.32996 6.80869 7.02813 7.26159 7.33543 8.93406 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.043968 B = 0.003837 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.677132 B = 7294.946203 C = 7746.505455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.458 5.458 3 C 0.442 3.558 4 N -0.618 5.618 5 C 0.523 3.477 6 O -0.517 6.517 7 C -0.012 4.012 8 C -0.542 4.542 9 H 0.026 0.974 10 C 0.000 4.000 11 N -0.954 5.954 12 Si 0.964 3.036 13 H -0.261 1.261 14 H -0.292 1.292 15 H -0.216 1.216 16 N -0.326 5.326 17 N -0.250 5.250 18 C 0.067 3.933 19 C 0.591 3.409 20 F -0.152 7.152 21 F -0.152 7.152 22 F -0.155 7.155 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.443 0.557 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.892 -19.342 -0.058 28.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.156 5.156 3 C 0.086 3.914 4 N -0.277 5.277 5 C 0.311 3.689 6 O -0.385 6.385 7 C -0.052 4.052 8 C -0.580 4.580 9 H 0.045 0.955 10 C -0.196 4.196 11 N -0.594 5.594 12 Si 0.784 3.216 13 H -0.186 1.186 14 H -0.218 1.218 15 H -0.138 1.138 16 N -0.174 5.174 17 N -0.093 5.093 18 C -0.203 4.203 19 C 0.533 3.467 20 F -0.133 7.133 21 F -0.133 7.133 22 F -0.136 7.136 23 H 0.134 0.866 24 H 0.136 0.864 25 H 0.146 0.854 26 H 0.285 0.715 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.524 -19.301 -0.048 26.752 hybrid contribution -1.442 0.577 0.021 1.553 sum -19.966 -18.724 -0.028 27.372 Atomic orbital electron populations 1.23027 0.70462 1.08730 1.07515 1.46059 1.10696 1.02491 1.56396 1.21460 0.86567 0.84238 0.99108 1.43037 1.12955 0.97755 1.73907 1.21928 0.85101 0.88233 0.73624 1.90779 1.19707 1.83183 1.44817 1.19642 0.98328 0.84972 1.02229 1.21146 0.93003 0.91704 1.52171 0.95520 1.26199 1.02742 0.97215 0.93456 1.70109 1.32607 1.05078 1.51618 0.85515 0.78197 0.78208 0.79681 1.18599 1.21824 1.13788 1.75131 1.16159 1.01379 1.24757 1.74177 1.17728 1.03647 1.13709 1.24332 0.89256 0.91030 1.15651 1.15929 0.75156 0.80793 0.74780 1.93287 1.54632 1.73487 1.91902 1.93252 1.58767 1.95494 1.65814 1.93300 1.88908 1.92530 1.38871 0.86555 0.86376 0.85415 0.71483 0.89266 0.89431 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.90 127.77 1.39 1.69 15 2 N -0.46 -9.67 3.20 -537.96 -1.72 -11.40 15 3 C 0.44 13.64 8.54 259.94 2.22 15.86 15 4 N -0.62 -16.87 5.40 -311.56 -1.68 -18.56 15 5 C 0.52 21.07 7.78 87.66 0.68 21.75 15 6 O -0.52 -27.64 14.19 -3.04 -0.04 -27.68 15 7 C -0.01 -0.48 4.53 29.10 0.13 -0.34 15 8 C -0.54 -30.80 9.48 25.60 0.24 -30.56 15 9 H 0.03 1.83 7.00 -2.91 -0.02 1.81 15 10 C 0.00 0.02 5.47 84.65 0.46 0.48 15 11 N -0.95 -59.71 13.96 21.45 0.30 -59.41 15 12 Si 0.96 38.40 27.47 68.60 1.88 40.28 15 13 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 14 H -0.29 -11.99 7.11 99.48 0.71 -11.28 15 15 H -0.22 -6.83 6.54 99.48 0.65 -6.17 15 16 N -0.33 -13.45 10.45 -57.78 -0.60 -14.05 15 17 N -0.25 -9.07 12.02 -49.61 -0.60 -9.67 15 18 C 0.07 1.74 7.35 137.68 1.01 2.75 15 19 C 0.59 11.33 3.37 71.24 0.24 11.57 15 20 F -0.15 -3.37 17.18 44.97 0.77 -2.59 15 21 F -0.15 -2.20 15.52 44.97 0.70 -1.50 15 22 F -0.15 -2.68 17.30 44.97 0.78 -1.90 15 23 H 0.12 0.36 8.14 -2.39 -0.02 0.34 15 24 H 0.12 0.51 6.36 -2.39 -0.02 0.50 15 25 H 0.13 0.21 7.66 -2.39 -0.02 0.19 15 26 H 0.44 6.49 8.16 -92.72 -0.76 5.73 15 27 H 0.09 2.99 7.20 -2.39 -0.02 2.97 15 28 H 0.09 2.89 7.57 -2.39 -0.02 2.88 15 29 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 Total: -1.00 -87.35 275.26 6.60 -80.75 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 0.43 Total: 2.52 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.38 Total: 23.20 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -4.31 Total: -113.08 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 2.25 Total: -6.00 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.88 Total: 40.28 kcal Total: -87.35 6.60 -80.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189383.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.318 kcal (2) G-P(sol) polarization free energy of solvation -87.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds