Wall clock time and date at job start Tue Mar 31 2020 01:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38681 * 119.27549 * 2 1 4 4 C 1.38010 * 119.62376 * 179.69606 * 3 2 1 5 5 C 1.41004 * 118.27960 * 0.54474 * 4 3 2 6 6 C 1.41021 * 120.70267 * 179.72889 * 5 4 3 7 7 H 1.08008 * 119.99681 * 209.73723 * 6 5 4 8 8 C 1.39943 * 119.99946 * 29.74154 * 6 5 4 9 9 N 1.30873 * 119.99809 * 193.58638 * 8 6 5 10 10 Si 1.86804 * 120.00070 * 13.59057 * 8 6 5 11 11 H 1.48498 * 109.47112 * 267.93034 * 10 8 6 12 12 H 1.48500 * 109.46901 * 27.93301 * 10 8 6 13 13 H 1.48497 * 109.47071 * 147.93147 * 10 8 6 14 14 C 1.41705 * 118.59108 * 359.46140 * 5 4 3 15 15 N 1.38089 * 119.90617 * 180.29188 * 14 5 4 16 16 C 1.46507 * 119.99793 * 179.97438 * 15 14 5 17 17 H 1.08998 * 109.23879 * 34.30254 * 16 15 14 18 18 C 1.52962 * 109.24554 * 153.75534 * 16 15 14 19 19 C 1.54029 * 106.91153 * 156.41383 * 18 16 15 20 20 S 1.81925 * 104.38965 * 327.19189 * 19 18 16 21 21 C 1.50448 * 109.24765 * 274.84802 * 16 15 14 22 22 O 1.21326 * 125.75485 * 37.85686 * 21 16 15 23 23 N 1.31968 * 119.27179 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47235 * 270.01785 * 1 2 3 25 25 H 1.08997 * 109.47497 * 30.01728 * 1 2 3 26 26 H 1.09004 * 109.47792 * 150.02141 * 1 2 3 27 27 H 1.07992 * 120.18912 * 359.95943 * 3 2 1 28 28 H 1.07998 * 120.85997 * 180.27703 * 4 3 2 29 29 H 0.97004 * 119.99556 * 179.97438 * 9 8 6 30 30 H 0.96995 * 120.00449 * 0.02562 * 15 14 5 31 31 H 1.09002 * 109.97530 * 275.77494 * 18 16 15 32 32 H 1.08996 * 109.97578 * 37.00988 * 18 16 15 33 33 H 1.09002 * 110.44730 * 85.91548 * 19 18 16 34 34 H 1.08999 * 110.45180 * 208.46357 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2181 0.0064 5 6 4.2408 -0.0195 0.0009 6 6 5.6501 -0.0706 0.0012 7 1 6.1605 -0.8996 -0.4664 8 6 6.3871 0.9529 0.6075 9 7 7.6729 1.0534 0.3852 10 14 5.5358 2.1757 1.7343 11 1 5.0997 3.3556 0.9450 12 1 4.3517 1.5324 2.3583 13 1 6.4791 2.6111 2.7952 14 6 3.4736 -1.2110 0.0008 15 7 4.1073 -2.4379 0.0017 16 6 3.3161 -3.6709 0.0022 17 1 2.4067 -3.5144 -0.5781 18 6 4.1340 -4.7951 -0.6356 19 6 3.5683 -6.1224 -0.0963 20 16 3.0244 -5.7282 1.5944 21 6 2.9469 -4.0227 1.4176 22 8 2.6443 -3.2338 2.2883 23 7 2.1522 -1.1512 0.0005 24 1 -0.3634 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3635 -0.8902 -0.5135 27 1 1.6364 2.1398 -0.0007 28 1 4.1135 2.1485 0.0110 29 1 8.1837 1.7630 0.8052 30 1 5.0762 -2.4834 0.0026 31 1 4.0322 -4.7605 -1.7203 32 1 5.1832 -4.6964 -0.3571 33 1 2.7231 -6.4500 -0.7017 34 1 4.3442 -6.8877 -0.0781 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157180003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:25 Heat of formation + Delta-G solvation = -3.615844 kcal Electronic energy + Delta-G solvation = -19430.777898 eV Core-core repulsion = 16454.496627 eV Total energy + Delta-G solvation = -2976.281271 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.48534 -38.46395 -36.27096 -34.18188 -33.25200 -31.57129 -29.82535 -28.05655 -26.83061 -24.27900 -23.54250 -21.97394 -20.88178 -20.34980 -17.44708 -17.32501 -16.84477 -16.13500 -15.96212 -15.15267 -14.43730 -14.24510 -13.96340 -13.76910 -13.50002 -13.38707 -13.27176 -12.88590 -12.55033 -12.09459 -11.98133 -11.82273 -11.52764 -11.34946 -11.15835 -10.82748 -10.72656 -10.28303 -9.99607 -9.82284 -9.43812 -8.81507 -8.40220 -8.20829 -8.19513 -6.98755 -6.86210 -4.42580 1.44087 1.87923 2.08796 2.48540 2.71417 3.06543 3.18680 3.30535 3.89552 3.95400 4.31398 4.51726 4.68924 4.81774 4.88624 5.32566 5.35685 5.39922 5.55540 5.72154 5.86964 5.88948 6.16869 6.29229 6.33018 6.39031 6.55886 6.79829 7.01999 7.21085 7.30987 7.49437 7.72723 7.91781 8.18473 8.22998 8.58386 8.70073 9.47436 10.03517 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.006761 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.217912 B = 4140.376755 C = 5045.754201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.030 3.970 3 C -0.161 4.161 4 C -0.197 4.197 5 C 0.019 3.981 6 C -0.441 4.441 7 H 0.090 0.910 8 C 0.085 3.915 9 N -0.813 5.813 10 Si 0.912 3.088 11 H -0.270 1.270 12 H -0.246 1.246 13 H -0.292 1.292 14 C 0.323 3.677 15 N -0.705 5.705 16 C 0.112 3.888 17 H 0.123 0.877 18 C -0.129 4.129 19 C -0.081 4.081 20 S -0.225 6.225 21 C 0.358 3.642 22 O -0.382 6.382 23 N -0.515 5.515 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.285 0.715 30 H 0.412 0.588 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 -9.630 -2.743 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C -0.183 4.183 4 C -0.223 4.223 5 C 0.012 3.988 6 C -0.471 4.471 7 H 0.108 0.892 8 C -0.134 4.134 9 N -0.438 5.438 10 Si 0.739 3.261 11 H -0.197 1.197 12 H -0.169 1.169 13 H -0.220 1.220 14 C 0.084 3.916 15 N -0.345 5.345 16 C -0.005 4.005 17 H 0.141 0.859 18 C -0.167 4.167 19 C -0.230 4.230 20 S 0.006 5.994 21 C 0.119 3.881 22 O -0.254 6.254 23 N -0.232 5.232 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.251 0.749 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.307 -10.639 -1.289 12.434 hybrid contribution 0.930 2.230 -0.409 2.450 sum -5.376 -8.409 -1.699 10.125 Atomic orbital electron populations 1.20304 0.91261 1.00957 1.00756 1.19969 0.94577 0.87613 1.08143 1.21117 0.94596 0.97211 1.05394 1.21072 0.93710 0.96778 1.10725 1.18016 0.94332 0.90197 0.96300 1.19077 0.89089 1.07338 1.31643 0.89224 1.26046 0.94750 0.96910 0.95670 1.69658 1.07980 1.30206 1.35937 0.86315 0.79862 0.80181 0.79720 1.19697 1.16921 1.21985 1.18179 0.87898 0.85071 1.00467 1.43609 1.07443 0.99971 1.83518 1.21771 0.98308 0.87225 0.93222 0.85933 1.22239 1.00987 0.90947 1.02564 1.23968 1.04817 1.00846 0.93348 1.86150 1.81068 1.12817 1.19363 1.26796 0.76834 0.91473 0.92977 1.90618 1.37591 1.52693 1.44527 1.66307 1.08071 1.30028 1.18814 0.92893 0.92633 0.92548 0.88054 0.87264 0.90432 0.74877 0.87843 0.89082 0.87800 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.15 36.00 0.37 -0.94 16 2 C 0.03 0.66 6.79 -82.37 -0.56 0.10 16 3 C -0.16 -3.59 9.69 -39.50 -0.38 -3.98 16 4 C -0.20 -4.80 7.17 -38.62 -0.28 -5.07 16 5 C 0.02 0.48 5.18 -106.47 -0.55 -0.07 16 6 C -0.44 -11.33 8.97 -37.89 -0.34 -11.67 16 7 H 0.09 2.30 7.03 -52.48 -0.37 1.93 16 8 C 0.08 2.17 5.47 -17.32 -0.09 2.07 16 9 N -0.81 -21.10 13.93 55.55 0.77 -20.33 16 10 Si 0.91 21.13 24.42 -169.99 -4.15 16.98 16 11 H -0.27 -6.04 6.61 56.52 0.37 -5.66 16 12 H -0.25 -6.06 6.73 56.52 0.38 -5.67 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 14 C 0.32 7.54 7.31 -155.02 -1.13 6.41 16 15 N -0.70 -13.73 5.04 -54.75 -0.28 -14.00 16 16 C 0.11 1.75 2.85 -69.22 -0.20 1.55 16 17 H 0.12 2.00 7.49 -51.93 -0.39 1.61 16 18 C -0.13 -1.35 6.18 -26.21 -0.16 -1.51 16 19 C -0.08 -0.71 7.22 37.69 0.27 -0.44 16 20 S -0.23 -3.06 22.84 -107.50 -2.46 -5.51 16 21 C 0.36 6.35 7.43 35.88 0.27 6.61 16 22 O -0.38 -8.53 17.77 5.52 0.10 -8.43 16 23 N -0.51 -11.86 9.05 -8.11 -0.07 -11.93 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.11 2.62 4.38 -52.49 -0.23 2.39 16 29 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 30 H 0.41 7.78 6.71 -40.82 -0.27 7.51 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -30.52 296.51 -8.22 -38.74 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -3.81 Total: 6.95 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.79 Total: -6.93 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.42 Total: -46.26 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.10 Total: -8.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.15 Total: 16.98 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.46 Total: -5.51 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.52 -8.22 -38.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157180003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.120 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds