Wall clock time and date at job start Tue Mar 31 2020 01:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38681 * 119.27549 * 2 1 4 4 C 1.38010 * 119.62376 * 179.69606 * 3 2 1 5 5 C 1.41004 * 118.27960 * 0.54474 * 4 3 2 6 6 C 1.41021 * 120.70267 * 179.72889 * 5 4 3 7 7 H 1.08008 * 119.99681 * 209.73723 * 6 5 4 8 8 C 1.39943 * 119.99946 * 29.74154 * 6 5 4 9 9 N 1.30873 * 119.99809 * 193.58638 * 8 6 5 10 10 Si 1.86804 * 120.00070 * 13.59057 * 8 6 5 11 11 H 1.48498 * 109.47112 * 267.93034 * 10 8 6 12 12 H 1.48500 * 109.46901 * 27.93301 * 10 8 6 13 13 H 1.48497 * 109.47071 * 147.93147 * 10 8 6 14 14 C 1.41705 * 118.59108 * 359.46140 * 5 4 3 15 15 N 1.38089 * 119.90617 * 180.29188 * 14 5 4 16 16 C 1.46507 * 119.99793 * 179.97438 * 15 14 5 17 17 H 1.08998 * 109.23879 * 34.30254 * 16 15 14 18 18 C 1.52962 * 109.24554 * 153.75534 * 16 15 14 19 19 C 1.54029 * 106.91153 * 156.41383 * 18 16 15 20 20 S 1.81925 * 104.38965 * 327.19189 * 19 18 16 21 21 C 1.50448 * 109.24765 * 274.84802 * 16 15 14 22 22 O 1.21326 * 125.75485 * 37.85686 * 21 16 15 23 23 N 1.31968 * 119.27179 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47235 * 270.01785 * 1 2 3 25 25 H 1.08997 * 109.47497 * 30.01728 * 1 2 3 26 26 H 1.09004 * 109.47792 * 150.02141 * 1 2 3 27 27 H 1.07992 * 120.18912 * 359.95943 * 3 2 1 28 28 H 1.07998 * 120.85997 * 180.27703 * 4 3 2 29 29 H 0.97004 * 119.99556 * 179.97438 * 9 8 6 30 30 H 0.96995 * 120.00449 * 0.02562 * 15 14 5 31 31 H 1.09002 * 109.97530 * 275.77494 * 18 16 15 32 32 H 1.08996 * 109.97578 * 37.00988 * 18 16 15 33 33 H 1.09002 * 110.44730 * 85.91548 * 19 18 16 34 34 H 1.08999 * 110.45180 * 208.46357 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2181 0.0064 5 6 4.2408 -0.0195 0.0009 6 6 5.6501 -0.0706 0.0012 7 1 6.1605 -0.8996 -0.4664 8 6 6.3871 0.9529 0.6075 9 7 7.6729 1.0534 0.3852 10 14 5.5358 2.1757 1.7343 11 1 5.0997 3.3556 0.9450 12 1 4.3517 1.5324 2.3583 13 1 6.4791 2.6111 2.7952 14 6 3.4736 -1.2110 0.0008 15 7 4.1073 -2.4379 0.0017 16 6 3.3161 -3.6709 0.0022 17 1 2.4067 -3.5144 -0.5781 18 6 4.1340 -4.7951 -0.6356 19 6 3.5683 -6.1224 -0.0963 20 16 3.0244 -5.7282 1.5944 21 6 2.9469 -4.0227 1.4176 22 8 2.6443 -3.2338 2.2883 23 7 2.1522 -1.1512 0.0005 24 1 -0.3634 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3635 -0.8902 -0.5135 27 1 1.6364 2.1398 -0.0007 28 1 4.1135 2.1485 0.0110 29 1 8.1837 1.7630 0.8052 30 1 5.0762 -2.4834 0.0026 31 1 4.0322 -4.7605 -1.7203 32 1 5.1832 -4.6964 -0.3571 33 1 2.7231 -6.4500 -0.7017 34 1 4.3442 -6.8877 -0.0781 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157180003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:24 Heat of formation + Delta-G solvation = -23.745938 kcal Electronic energy + Delta-G solvation = -19431.650805 eV Core-core repulsion = 16454.496627 eV Total energy + Delta-G solvation = -2977.154177 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04557 -40.04256 -37.59102 -35.99452 -34.67435 -33.37393 -31.33709 -29.67680 -28.18705 -25.75005 -24.91346 -23.56942 -22.58977 -21.71388 -19.34307 -18.58977 -18.33124 -17.68858 -17.42887 -16.77663 -15.94503 -15.52082 -15.48237 -15.28426 -15.10714 -15.00282 -14.50880 -14.12119 -14.01353 -13.75006 -13.50309 -13.16403 -13.08103 -12.95512 -12.64002 -12.18763 -12.07702 -11.80240 -11.70919 -11.41722 -11.31802 -10.33785 -10.01118 -9.97445 -9.48372 -8.89445 -8.56730 -6.33385 0.29907 0.52511 0.66750 0.84973 1.13659 1.19905 1.33246 1.42418 2.07343 2.47996 2.64680 3.18578 3.50840 3.69960 3.86917 3.97584 4.02014 4.20730 4.33975 4.57287 4.61411 4.73151 4.80028 4.88314 4.91909 4.93312 4.98483 5.18619 5.26176 5.44567 5.66580 5.94701 5.99332 6.12459 6.34680 6.58802 6.74025 6.86119 7.70732 8.17651 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.006761 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.217912 B = 4140.376755 C = 5045.754201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.034 3.966 3 C -0.180 4.180 4 C -0.205 4.205 5 C -0.014 4.014 6 C -0.461 4.461 7 H 0.076 0.924 8 C 0.053 3.947 9 N -0.847 5.847 10 Si 0.955 3.045 11 H -0.256 1.256 12 H -0.272 1.272 13 H -0.282 1.282 14 C 0.321 3.679 15 N -0.704 5.704 16 C 0.106 3.894 17 H 0.117 0.883 18 C -0.119 4.119 19 C -0.065 4.065 20 S -0.213 6.213 21 C 0.341 3.659 22 O -0.448 6.448 23 N -0.528 5.528 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.292 0.708 30 H 0.412 0.588 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 -11.186 -3.752 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 C -0.202 4.202 4 C -0.231 4.231 5 C -0.021 4.021 6 C -0.492 4.492 7 H 0.094 0.906 8 C -0.161 4.161 9 N -0.474 5.474 10 Si 0.781 3.219 11 H -0.182 1.182 12 H -0.197 1.197 13 H -0.209 1.209 14 C 0.082 3.918 15 N -0.343 5.343 16 C -0.009 4.009 17 H 0.135 0.865 18 C -0.158 4.158 19 C -0.213 4.213 20 S 0.019 5.981 21 C 0.106 3.894 22 O -0.326 6.326 23 N -0.246 5.246 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.250 0.750 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.152 0.848 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.749 -12.260 -2.330 14.690 hybrid contribution 1.190 2.502 -0.162 2.775 sum -6.560 -9.758 -2.493 12.019 Atomic orbital electron populations 1.20401 0.87759 1.02911 1.01872 1.20913 0.97060 0.87313 1.04734 1.21468 0.94012 0.98882 1.05818 1.21295 0.94937 0.96558 1.10275 1.18231 0.94374 0.91459 0.98084 1.19053 0.89615 1.07563 1.32971 0.90605 1.26495 0.95152 0.98017 0.96438 1.69671 1.08605 1.31533 1.37629 0.85660 0.78238 0.79200 0.78763 1.18186 1.19704 1.20879 1.18482 0.88220 0.86148 0.98999 1.43744 1.07726 1.00329 1.82494 1.22146 0.98629 0.87359 0.92789 0.86507 1.22275 1.00260 0.89488 1.03752 1.24296 1.06884 1.00405 0.89728 1.86092 1.80196 1.08205 1.23564 1.27213 0.75697 0.93338 0.93164 1.90586 1.40362 1.55322 1.46342 1.66517 1.07772 1.30593 1.19690 0.92026 0.89643 0.91685 0.84909 0.87439 0.89801 0.74964 0.85074 0.88673 0.84778 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.15 71.23 0.72 -1.58 16 2 C 0.03 1.44 6.79 42.64 0.29 1.73 16 3 C -0.18 -7.82 9.69 22.32 0.22 -7.60 16 4 C -0.20 -10.02 7.17 22.89 0.16 -9.86 16 5 C -0.01 -0.72 5.18 -21.06 -0.11 -0.83 16 6 C -0.46 -24.61 8.97 23.37 0.21 -24.40 16 7 H 0.08 4.10 7.03 -2.91 -0.02 4.08 16 8 C 0.05 2.82 5.47 85.25 0.47 3.29 16 9 N -0.85 -45.25 13.93 21.83 0.30 -44.94 16 10 Si 0.95 44.38 24.42 68.60 1.68 46.05 16 11 H -0.26 -11.16 6.61 99.48 0.66 -10.50 16 12 H -0.27 -13.68 6.73 99.48 0.67 -13.01 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 C 0.32 15.24 7.31 134.05 0.98 16.22 16 15 N -0.70 -27.78 5.04 -327.12 -1.65 -29.43 16 16 C 0.11 3.23 2.85 44.15 0.13 3.36 16 17 H 0.12 3.69 7.49 -2.39 -0.02 3.67 16 18 C -0.12 -2.12 6.18 30.93 0.19 -1.93 16 19 C -0.07 -0.85 7.22 72.33 0.52 -0.33 16 20 S -0.21 -5.33 22.84 -56.49 -1.29 -6.62 16 21 C 0.34 12.03 7.43 71.16 0.53 12.56 16 22 O -0.45 -20.67 17.77 -3.17 -0.06 -20.73 16 23 N -0.53 -24.17 9.05 -179.58 -1.63 -25.80 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 28 H 0.11 5.19 4.38 -2.91 -0.01 5.17 16 29 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 30 H 0.41 16.00 6.71 -92.71 -0.62 15.38 16 31 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.68 7.87 -2.39 -0.02 1.66 16 33 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.06 296.51 2.10 -67.96 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.43 Total: 22.88 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.31 Total: -9.38 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -2.97 Total: -100.17 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.06 Total: -20.73 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.68 Total: 46.05 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.29 Total: -6.62 kcal Total: -70.06 2.10 -67.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157180003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.213 kcal (2) G-P(sol) polarization free energy of solvation -70.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds