Wall clock time and date at job start Tue Mar 31 2020 01:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31479 * 119.81571 * 2 1 4 4 C 1.32741 * 121.73165 * 180.02562 * 3 2 1 5 5 N 1.38369 * 119.43396 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00159 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.23572 * 34.30032 * 6 5 4 8 8 C 1.52963 * 109.24820 * 153.75185 * 6 5 4 9 9 C 1.53944 * 106.95134 * 156.48113 * 8 6 5 10 10 S 1.81921 * 104.34687 * 327.08412 * 9 8 6 11 11 C 1.50447 * 109.25108 * 274.84575 * 6 5 4 12 12 O 1.21331 * 125.74900 * 37.84315 * 11 6 5 13 13 C 1.39712 * 121.13809 * 0.02562 * 4 3 2 14 14 C 1.36562 * 119.49118 * 359.97438 * 13 4 3 15 15 C 1.40762 * 119.81303 * 179.97438 * 2 1 3 16 16 C 1.41196 * 120.57232 * 0.02836 * 15 2 1 17 17 H 1.08006 * 119.99944 * 24.80763 * 16 15 2 18 18 C 1.39865 * 119.99882 * 204.81736 * 16 15 2 19 19 N 1.30902 * 120.00108 * 14.61803 * 18 16 15 20 20 Si 1.86795 * 119.99891 * 194.61937 * 18 16 15 21 21 H 1.48496 * 109.47223 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46971 * 119.99835 * 20 18 16 23 23 H 1.48496 * 109.47559 * 239.99652 * 20 18 16 24 24 H 1.09001 * 109.47328 * 90.00413 * 1 2 3 25 25 H 1.08996 * 109.46999 * 210.00494 * 1 2 3 26 26 H 1.09003 * 109.47014 * 330.00204 * 1 2 3 27 27 H 0.96999 * 119.99649 * 0.02562 * 5 4 3 28 28 H 1.09002 * 109.97476 * 275.77980 * 8 6 5 29 29 H 1.09003 * 109.97247 * 37.05234 * 8 6 5 30 30 H 1.08998 * 110.42641 * 208.39175 * 9 8 6 31 31 H 1.09004 * 110.62818 * 85.87371 * 9 8 6 32 32 H 1.07998 * 120.25231 * 179.97438 * 13 4 3 33 33 H 1.07998 * 120.79086 * 179.72733 * 14 13 4 34 34 H 0.96994 * 119.99991 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1851 -0.0005 5 7 4.1268 2.4123 -0.0010 6 6 5.5904 2.4758 -0.0021 7 1 5.9855 1.6420 -0.5824 8 6 6.0375 3.7916 -0.6412 9 6 7.4489 4.0938 -0.1058 10 16 7.4418 3.4255 1.5862 11 6 6.0922 2.3774 1.4127 12 8 5.6224 1.6762 2.2844 13 6 4.2495 0.0141 -0.0016 14 6 3.6199 -1.1977 -0.0016 15 6 2.2069 -1.2213 0.0005 16 6 1.5091 -2.4488 0.0005 17 1 0.5043 -2.4988 -0.3924 18 6 2.1191 -3.6000 0.5094 19 7 3.2022 -3.4994 1.2376 20 14 1.3883 -5.2810 0.1498 21 1 0.1737 -5.1234 -0.6898 22 1 2.3856 -6.1098 -0.5740 23 1 1.0251 -5.9464 1.4267 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.6058 3.2305 -0.0006 28 1 6.0666 3.6878 -1.7259 29 1 5.3532 4.5927 -0.3617 30 1 7.6276 5.1689 -0.0899 31 1 8.2045 3.5919 -0.7103 32 1 5.3282 0.0669 -0.0024 33 1 4.1882 -2.1160 -0.0069 34 1 3.6255 -4.2977 1.5902 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157180193.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:31 Heat of formation + Delta-G solvation = -21.356745 kcal Electronic energy + Delta-G solvation = -19046.643106 eV Core-core repulsion = 16069.592532 eV Total energy + Delta-G solvation = -2977.050574 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05934 -40.02697 -37.75127 -35.91443 -34.42397 -32.86286 -31.67361 -28.84359 -28.20114 -26.30959 -24.96535 -23.20475 -22.78696 -21.25882 -19.16851 -18.66489 -18.41564 -17.48376 -17.27890 -16.84561 -15.99985 -15.64795 -15.40529 -15.16656 -15.03173 -14.55072 -14.49659 -13.97651 -13.75057 -13.52732 -13.32388 -13.13387 -13.06544 -12.83265 -12.62489 -12.22668 -12.16643 -11.73025 -11.58532 -11.42526 -11.03309 -10.23008 -10.01151 -9.96943 -9.51576 -8.68181 -8.43291 -6.15216 0.26290 0.44178 0.82803 1.05098 1.14176 1.40297 1.54007 1.56206 2.23136 2.41358 2.79099 3.12591 3.63947 3.76796 3.84123 3.85822 4.11655 4.30149 4.52422 4.61846 4.64818 4.74244 4.88283 4.93900 4.99499 5.04255 5.18745 5.33894 5.46604 5.60655 5.80726 5.94667 5.97422 6.38124 6.54238 6.78233 6.91880 7.02832 7.79114 8.39484 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.028258 B = 0.004580 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.619097 B = 6111.654114 C = 6711.391404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.018 3.982 3 N -0.529 5.529 4 C 0.285 3.715 5 N -0.712 5.712 6 C 0.105 3.895 7 H 0.115 0.885 8 C -0.112 4.112 9 C -0.068 4.068 10 S -0.212 6.212 11 C 0.331 3.669 12 O -0.450 6.450 13 C -0.204 4.204 14 C -0.114 4.114 15 C 0.002 3.998 16 C -0.477 4.477 17 H 0.087 0.913 18 C 0.028 3.972 19 N -0.843 5.843 20 Si 0.984 3.016 21 H -0.252 1.252 22 H -0.268 1.268 23 H -0.271 1.271 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.404 0.596 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.146 12.469 -6.523 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 N -0.245 5.245 4 C 0.052 3.948 5 N -0.352 5.352 6 C -0.011 4.011 7 H 0.132 0.868 8 C -0.151 4.151 9 C -0.216 4.216 10 S 0.020 5.980 11 C 0.096 3.904 12 O -0.329 6.329 13 C -0.227 4.227 14 C -0.140 4.140 15 C -0.003 4.003 16 C -0.508 4.508 17 H 0.105 0.895 18 C -0.185 4.185 19 N -0.471 5.471 20 Si 0.805 3.195 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.196 1.196 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.240 0.760 28 H 0.153 0.847 29 H 0.122 0.878 30 H 0.169 0.831 31 H 0.151 0.849 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.471 12.886 -4.983 16.206 hybrid contribution -0.541 -1.929 -0.395 2.042 sum 7.930 10.957 -5.378 14.556 Atomic orbital electron populations 1.20237 0.88680 1.01573 1.01525 1.21322 0.96619 0.87152 1.06902 1.66402 1.07766 1.31041 1.19281 1.17894 0.88171 0.86153 1.02598 1.43413 1.02840 1.04297 1.84663 1.22283 0.82583 1.03729 0.92519 0.86781 1.22234 0.95694 0.93335 1.03813 1.24330 1.00196 1.07558 0.89482 1.86243 1.38592 1.49421 1.23694 1.27468 0.86707 0.82760 0.93453 1.90665 1.58034 1.37668 1.46510 1.20839 0.98567 0.92832 1.10503 1.21327 0.95322 0.96518 1.00861 1.18539 0.92634 0.94335 0.94796 1.19653 1.01912 0.92583 1.36689 0.89479 1.26797 0.94691 1.05089 0.91875 1.69913 1.19194 1.32571 1.25442 0.85116 0.79378 0.76019 0.78942 1.17496 1.19253 1.19622 0.91538 0.91574 0.92161 0.75979 0.84675 0.87813 0.83108 0.84920 0.87714 0.86899 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.68 9.58 71.24 0.68 -2.00 16 2 C 0.02 0.96 6.86 43.23 0.30 1.25 16 3 N -0.53 -26.31 10.29 -179.36 -1.85 -28.15 16 4 C 0.29 13.25 7.44 133.32 0.99 14.24 16 5 N -0.71 -24.60 5.14 -328.34 -1.69 -26.28 16 6 C 0.10 2.76 2.54 44.15 0.11 2.88 16 7 H 0.11 3.09 6.35 -2.39 -0.02 3.07 16 8 C -0.11 -1.43 6.17 30.90 0.19 -1.24 16 9 C -0.07 -0.65 7.22 72.30 0.52 -0.13 16 10 S -0.21 -4.79 22.85 -56.49 -1.29 -6.08 16 11 C 0.33 10.82 7.26 71.16 0.52 11.33 16 12 O -0.45 -20.30 17.39 -3.19 -0.06 -20.35 16 13 C -0.20 -10.08 8.70 22.23 0.19 -9.88 16 14 C -0.11 -6.29 8.73 22.64 0.20 -6.09 16 15 C 0.00 0.11 5.59 -21.18 -0.12 -0.01 16 16 C -0.48 -25.77 8.16 23.39 0.19 -25.58 16 17 H 0.09 4.42 6.83 -2.91 -0.02 4.40 16 18 C 0.03 1.43 5.22 85.23 0.45 1.87 16 19 N -0.84 -46.17 10.83 21.82 0.24 -45.94 16 20 Si 0.98 38.94 29.58 68.60 2.03 40.97 16 21 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 22 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.07 2.83 6.75 -2.39 -0.02 2.81 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.40 12.41 8.54 -92.71 -0.79 11.62 16 28 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.15 7.87 -2.39 -0.02 1.13 16 30 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 4.71 6.08 -2.91 -0.02 4.69 16 33 H 0.11 6.49 6.18 -2.91 -0.02 6.47 16 34 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 Total: -1.00 -74.44 298.48 1.96 -72.47 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.36 Total: 26.72 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 4.22 Total: -13.35 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -3.30 Total: -100.38 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.35 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -1.29 Total: -6.08 kcal Total: -74.44 1.96 -72.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157180193.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.115 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds