Wall clock time and date at job start Tue Mar 31 2020 00:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00357 * 2 1 4 4 H 1.48500 * 109.47008 * 270.00565 * 3 2 1 5 5 H 1.48489 * 109.46920 * 30.00444 * 3 2 1 6 6 H 1.48500 * 109.47054 * 150.00634 * 3 2 1 7 7 C 1.37884 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99900 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99736 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46772 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46768 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46750 * 179.97438 * 11 10 9 13 13 C 1.39903 * 119.99610 * 179.97438 * 12 11 10 14 14 C 1.39238 * 119.88916 * 359.97438 * 13 12 11 15 15 C 1.37967 * 120.39447 * 180.02562 * 14 13 12 16 16 C 1.38541 * 119.99420 * 359.97438 * 15 14 13 17 17 O 1.35419 * 133.65665 * 179.97438 * 16 15 14 18 18 C 1.34488 * 108.17224 * 180.02562 * 17 16 15 19 19 S 1.76201 * 124.96891 * 179.97438 * 18 17 16 20 20 N 1.30951 * 110.06528 * 359.74915 * 18 17 16 21 21 C 1.36123 * 108.70345 * 0.40519 * 20 18 17 22 22 C 1.38383 * 119.88194 * 179.97438 * 13 12 11 23 23 H 0.97009 * 119.99573 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46878 * 60.00013 * 9 7 2 25 25 H 1.09001 * 109.47210 * 299.99684 * 9 7 2 26 26 H 1.09002 * 109.47091 * 59.99916 * 10 9 7 27 27 H 1.09001 * 109.46994 * 299.99816 * 10 9 7 28 28 H 1.09002 * 109.47335 * 60.00125 * 11 10 9 29 29 H 1.08993 * 109.47410 * 299.99995 * 11 10 9 30 30 H 0.96996 * 120.00490 * 0.02562 * 12 11 10 31 31 H 1.07999 * 119.80381 * 0.02562 * 14 13 12 32 32 H 1.07993 * 120.00329 * 179.97438 * 15 14 13 33 33 H 1.41005 * 99.99917 * 359.97438 * 19 18 17 34 34 H 1.08001 * 120.16637 * 0.02624 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5514 -2.6367 -0.0035 12 7 6.0396 -4.0180 -0.0040 13 6 7.4151 -4.2737 -0.0057 14 6 8.3179 -3.2136 -0.0074 15 6 9.6765 -3.4538 -0.0096 16 6 10.1496 -4.7559 -0.0096 17 8 11.3897 -5.2999 -0.0118 18 6 11.2605 -6.6386 -0.0110 19 16 12.6007 -7.7825 -0.0138 20 7 9.9930 -6.9676 -0.0030 21 6 9.2465 -5.8293 -0.0074 22 6 7.8737 -5.5793 -0.0056 23 1 -0.4850 0.8402 0.0004 24 1 3.8751 -0.6805 0.8889 25 1 3.8745 -0.6802 -0.8912 26 1 3.6577 -3.1499 -0.8925 27 1 3.6584 -3.1511 0.8875 28 1 5.9155 -2.1234 0.8865 29 1 5.9140 -2.1225 -0.8935 30 1 5.4093 -4.7553 -0.0039 31 1 7.9524 -2.1974 -0.0070 32 1 10.3710 -2.6268 -0.0114 33 1 13.6884 -6.8853 -0.0174 34 1 7.1725 -6.4008 -0.0047 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:18 Heat of formation + Delta-G solvation = 38.795327 kcal Electronic energy + Delta-G solvation = -17805.852535 eV Core-core repulsion = 14831.410351 eV Total energy + Delta-G solvation = -2974.442184 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.21260 -38.89815 -35.92772 -34.76343 -33.50969 -31.78218 -30.27756 -29.05242 -26.62758 -24.46106 -23.33184 -22.29208 -21.74320 -20.36737 -18.76217 -18.25535 -17.32613 -16.98442 -16.91083 -16.30807 -15.15510 -15.04460 -14.38863 -14.32513 -14.16593 -13.69330 -13.18906 -12.93254 -12.66102 -12.17183 -12.06727 -11.96622 -11.89977 -11.68798 -11.10625 -11.00637 -10.62367 -10.30952 -10.06180 -9.86469 -9.76219 -9.47885 -9.28470 -8.60564 -8.19129 -7.42947 -6.10579 -4.09663 0.26296 0.42153 1.31721 1.37176 2.15954 2.79663 3.25847 3.33773 3.35695 3.44135 3.60748 4.34303 4.38968 4.62057 4.86476 5.01680 5.12922 5.22917 5.36521 5.39246 5.51749 5.85706 5.89285 5.96987 6.10066 6.11930 6.17912 6.35644 6.42670 6.70267 7.14753 7.22859 7.28963 7.30128 7.70433 7.73497 8.45867 8.93579 9.51034 11.02707 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.060739 B = 0.002529 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.881750 B =11069.251687 C =11504.383007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.737 5.737 13 C 0.230 3.770 14 C -0.154 4.154 15 C -0.046 4.046 16 C -0.047 4.047 17 O -0.220 6.220 18 C 0.226 3.774 19 S 0.059 5.941 20 N -0.452 5.452 21 C 0.078 3.922 22 C -0.158 4.158 23 H 0.264 0.736 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.403 0.597 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.425 -11.148 -0.016 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.365 5.365 13 C 0.123 3.877 14 C -0.177 4.177 15 C -0.065 4.065 16 C -0.100 4.100 17 O -0.114 6.114 18 C -0.094 4.094 19 S 0.213 5.787 20 N -0.187 5.187 21 C -0.035 4.035 22 C -0.184 4.184 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.238 0.762 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.078 0.922 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 25.526 -12.188 -0.006 28.286 hybrid contribution 0.355 2.596 -0.026 2.620 sum 25.881 -9.593 -0.032 27.601 Atomic orbital electron populations 1.69913 1.06328 1.26978 1.50821 1.25048 0.94766 0.99252 0.94491 0.86760 0.80331 0.83555 0.78520 1.20263 1.21355 1.18980 1.21095 0.89312 0.94537 1.51194 0.91008 1.19501 0.97386 0.91413 0.96510 1.21672 0.90513 1.00984 1.01954 1.21702 0.96841 0.81411 1.00782 1.45019 1.02232 1.08760 1.80454 1.17565 0.85116 0.92208 0.92838 1.20678 0.90930 0.99181 1.06885 1.19579 0.95031 0.91603 1.00326 1.20036 0.81325 0.96206 1.12459 1.84652 1.30733 1.19710 1.76297 1.27366 0.97831 0.82610 1.01622 1.87551 0.95139 1.02954 1.93020 1.71020 0.99306 1.28181 1.20186 1.19370 0.94617 0.87203 1.02350 1.19448 0.91741 0.95413 1.11831 0.92657 0.96369 0.96811 0.92034 0.92003 0.92294 0.92295 0.76165 0.83891 0.84790 0.92197 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.41 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.11 -2.00 5.27 -26.73 -0.14 -2.14 16 11 C 0.12 1.63 4.91 -4.04 -0.02 1.61 16 12 N -0.74 -9.31 5.74 -58.62 -0.34 -9.65 16 13 C 0.23 2.91 6.65 -83.75 -0.56 2.36 16 14 C -0.15 -1.80 9.30 -39.31 -0.37 -2.16 16 15 C -0.05 -0.52 10.05 -39.57 -0.40 -0.91 16 16 C -0.05 -0.63 7.41 -38.70 -0.29 -0.92 16 17 O -0.22 -2.76 10.79 2.02 0.02 -2.74 16 18 C 0.23 2.67 8.59 52.39 0.45 3.12 16 19 S 0.06 0.42 26.28 -107.50 -2.83 -2.41 16 20 N -0.45 -6.40 11.39 -11.46 -0.13 -6.53 16 21 C 0.08 1.12 7.22 -84.71 -0.61 0.50 16 22 C -0.16 -2.07 9.94 -39.04 -0.39 -2.46 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 25 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 29 H 0.06 0.81 7.94 -51.93 -0.41 0.39 16 30 H 0.40 4.67 8.48 -40.82 -0.35 4.32 16 31 H 0.14 1.47 6.70 -52.49 -0.35 1.12 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.11 0.48 9.55 96.90 0.93 1.41 16 34 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -31.68 308.97 -8.01 -39.69 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -2.64 Total: 1.47 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.86 Total: -14.31 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.31 Total: -42.76 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: 0.02 Total: -2.74 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.83 Total: -2.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.68 -8.01 -39.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.482 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds