Wall clock time and date at job start Tue Mar 31 2020 00:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00357 * 2 1 4 4 H 1.48500 * 109.47008 * 270.00565 * 3 2 1 5 5 H 1.48489 * 109.46920 * 30.00444 * 3 2 1 6 6 H 1.48500 * 109.47054 * 150.00634 * 3 2 1 7 7 C 1.37884 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99900 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99736 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46772 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46768 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46750 * 179.97438 * 11 10 9 13 13 C 1.39903 * 119.99610 * 179.97438 * 12 11 10 14 14 C 1.39238 * 119.88916 * 359.97438 * 13 12 11 15 15 C 1.37967 * 120.39447 * 180.02562 * 14 13 12 16 16 C 1.38541 * 119.99420 * 359.97438 * 15 14 13 17 17 O 1.35419 * 133.65665 * 179.97438 * 16 15 14 18 18 C 1.34488 * 108.17224 * 180.02562 * 17 16 15 19 19 S 1.76201 * 124.96891 * 179.97438 * 18 17 16 20 20 N 1.30951 * 110.06528 * 359.74915 * 18 17 16 21 21 C 1.36123 * 108.70345 * 0.40519 * 20 18 17 22 22 C 1.38383 * 119.88194 * 179.97438 * 13 12 11 23 23 H 0.97009 * 119.99573 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46878 * 60.00013 * 9 7 2 25 25 H 1.09001 * 109.47210 * 299.99684 * 9 7 2 26 26 H 1.09002 * 109.47091 * 59.99916 * 10 9 7 27 27 H 1.09001 * 109.46994 * 299.99816 * 10 9 7 28 28 H 1.09002 * 109.47335 * 60.00125 * 11 10 9 29 29 H 1.08993 * 109.47410 * 299.99995 * 11 10 9 30 30 H 0.96996 * 120.00490 * 0.02562 * 12 11 10 31 31 H 1.07999 * 119.80381 * 0.02562 * 14 13 12 32 32 H 1.07993 * 120.00329 * 179.97438 * 15 14 13 33 33 H 1.41005 * 99.99917 * 359.97438 * 19 18 17 34 34 H 1.08001 * 120.16637 * 0.02624 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5514 -2.6367 -0.0035 12 7 6.0396 -4.0180 -0.0040 13 6 7.4151 -4.2737 -0.0057 14 6 8.3179 -3.2136 -0.0074 15 6 9.6765 -3.4538 -0.0096 16 6 10.1496 -4.7559 -0.0096 17 8 11.3897 -5.2999 -0.0118 18 6 11.2605 -6.6386 -0.0110 19 16 12.6007 -7.7825 -0.0138 20 7 9.9930 -6.9676 -0.0030 21 6 9.2465 -5.8293 -0.0074 22 6 7.8737 -5.5793 -0.0056 23 1 -0.4850 0.8402 0.0004 24 1 3.8751 -0.6805 0.8889 25 1 3.8745 -0.6802 -0.8912 26 1 3.6577 -3.1499 -0.8925 27 1 3.6584 -3.1511 0.8875 28 1 5.9155 -2.1234 0.8865 29 1 5.9140 -2.1225 -0.8935 30 1 5.4093 -4.7553 -0.0039 31 1 7.9524 -2.1974 -0.0070 32 1 10.3710 -2.6268 -0.0114 33 1 13.6884 -6.8853 -0.0174 34 1 7.1725 -6.4008 -0.0047 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430710.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:17 Heat of formation + Delta-G solvation = 15.780015 kcal Electronic energy + Delta-G solvation = -17806.850554 eV Core-core repulsion = 14831.410351 eV Total energy + Delta-G solvation = -2975.440203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.11475 -39.85010 -37.11582 -35.78458 -35.13755 -33.46376 -31.29707 -30.21317 -28.10989 -25.35461 -24.76188 -23.21801 -22.88722 -21.91784 -19.55338 -19.18591 -18.89534 -18.19033 -17.90957 -17.25926 -16.44974 -16.31345 -15.88511 -15.25552 -15.18782 -14.72996 -14.60288 -14.41051 -13.81688 -13.73334 -13.42202 -12.88995 -12.83291 -12.66399 -12.56081 -12.38824 -11.83822 -11.66842 -11.62549 -11.54528 -11.30004 -11.04122 -10.74466 -10.25926 -8.97897 -8.38563 -8.27480 -6.32233 -0.46575 -0.45220 0.37526 0.88723 1.24253 1.39624 1.41643 1.53233 1.96638 2.38724 2.43476 2.67150 3.08455 3.44877 3.71765 3.98083 4.12239 4.14877 4.24015 4.27049 4.49788 4.58969 4.86546 4.96079 4.99834 5.05284 5.10974 5.19083 5.20786 5.35392 5.50965 5.60432 5.67508 6.23628 6.30848 6.36304 6.75382 6.77041 7.32535 8.89314 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.060739 B = 0.002529 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.881750 B =11069.251687 C =11504.383007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.002 4.002 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.238 1.238 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.104 4.104 11 C 0.129 3.871 12 N -0.737 5.737 13 C 0.227 3.773 14 C -0.158 4.158 15 C -0.037 4.037 16 C -0.066 4.066 17 O -0.222 6.222 18 C 0.225 3.775 19 S 0.081 5.919 20 N -0.490 5.490 21 C 0.057 3.943 22 C -0.172 4.172 23 H 0.265 0.735 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.406 0.594 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.145 0.855 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.658 -9.964 -0.018 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.198 4.198 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.161 1.161 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.142 4.142 11 C 0.006 3.994 12 N -0.365 5.365 13 C 0.120 3.880 14 C -0.180 4.180 15 C -0.057 4.057 16 C -0.119 4.119 17 O -0.116 6.116 18 C -0.094 4.094 19 S 0.235 5.765 20 N -0.225 5.225 21 C -0.057 4.057 22 C -0.198 4.198 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.242 0.758 31 H 0.179 0.821 32 H 0.181 0.819 33 H 0.109 0.891 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 28.790 -11.034 -0.008 30.832 hybrid contribution -0.595 2.072 -0.028 2.156 sum 28.195 -8.963 -0.036 29.585 Atomic orbital electron populations 1.70088 1.08518 1.28153 1.52768 1.26116 0.95664 1.03890 0.94165 0.85597 0.79708 0.77757 0.79215 1.19185 1.21504 1.16099 1.21527 0.92423 0.92971 1.50305 0.95260 1.19458 0.93591 0.94504 0.97206 1.21462 0.93349 0.98035 1.01404 1.21453 0.93807 0.82288 1.01879 1.44875 1.02481 1.08339 1.80826 1.17636 0.85017 0.92408 0.92898 1.20918 0.90922 0.99619 1.06553 1.19914 0.95434 0.91655 0.98690 1.20375 0.81429 0.96835 1.13290 1.84644 1.30475 1.20074 1.76445 1.28174 0.98620 0.82913 0.99699 1.87534 0.94619 1.02466 1.91876 1.70994 1.00467 1.28679 1.22388 1.19648 0.95244 0.87856 1.02924 1.19526 0.91695 0.95919 1.12660 0.92605 0.95470 0.95609 0.92699 0.92701 0.91220 0.91150 0.75825 0.82102 0.81917 0.89102 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.00 -0.12 5.47 84.66 0.46 0.35 16 3 Si 0.95 42.61 27.47 68.60 1.88 44.50 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 7 C -0.53 -29.88 9.66 25.60 0.25 -29.63 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 10 C -0.10 -3.56 5.27 30.59 0.16 -3.40 16 11 C 0.13 3.31 4.91 86.38 0.42 3.73 16 12 N -0.74 -17.45 5.74 -339.38 -1.95 -19.39 16 13 C 0.23 5.42 6.65 38.13 0.25 5.68 16 14 C -0.16 -3.27 9.30 22.45 0.21 -3.06 16 15 C -0.04 -0.76 10.05 22.28 0.22 -0.53 16 16 C -0.07 -1.68 7.41 22.84 0.17 -1.51 16 17 O -0.22 -5.27 10.79 -15.70 -0.17 -5.44 16 18 C 0.22 5.10 8.59 130.37 1.12 6.22 16 19 S 0.08 1.00 26.28 -56.49 -1.48 -0.48 16 20 N -0.49 -13.84 11.39 -304.34 -3.47 -17.30 16 21 C 0.06 1.60 7.22 39.29 0.28 1.88 16 22 C -0.17 -4.47 9.94 22.62 0.22 -4.24 16 23 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 24 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 25 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.67 7.94 -2.39 -0.02 1.65 16 29 H 0.07 1.67 7.94 -2.39 -0.02 1.66 16 30 H 0.41 9.09 8.48 -92.71 -0.79 8.30 16 31 H 0.16 2.71 6.70 -2.91 -0.02 2.69 16 32 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.15 0.77 9.55 73.80 0.70 1.47 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -70.23 308.97 0.03 -70.20 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.01 Total: 11.89 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.90 Total: -24.81 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -5.11 Total: -95.86 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.17 Total: -5.44 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.50 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -1.48 Total: -0.48 kcal Total: -70.23 0.03 -70.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430710.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.982 kcal (2) G-P(sol) polarization free energy of solvation -70.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds