Wall clock time and date at job start Tue Mar 31 2020 00:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48491 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47051 * 299.99933 * 3 2 1 6 6 H 1.48502 * 109.46904 * 59.99624 * 3 2 1 7 7 C 1.39924 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00055 * 197.79668 * 7 2 1 9 9 C 1.41319 * 119.99852 * 17.79630 * 7 2 1 10 10 C 1.40815 * 120.23054 * 24.59325 * 9 7 2 11 11 C 1.37538 * 119.91134 * 179.97438 * 10 9 7 12 12 C 1.38664 * 120.38340 * 359.72320 * 11 10 9 13 13 C 1.39048 * 120.46607 * 0.55272 * 12 11 10 14 14 N 1.39888 * 119.96119 * 179.72258 * 13 12 11 15 15 C 1.46497 * 119.99846 * 359.72918 * 14 13 12 16 16 C 1.50704 * 109.47101 * 180.02562 * 15 14 13 17 17 C 1.35269 * 126.71424 * 89.99805 * 16 15 14 18 18 C 1.41930 * 103.96455 * 180.24100 * 17 16 15 19 19 O 1.35705 * 126.88199 * 179.75996 * 18 17 16 20 20 N 1.30618 * 106.23556 * 359.60810 * 18 17 16 21 21 O 1.20913 * 111.50215 * 0.41670 * 20 18 17 22 22 C 1.38634 * 120.08132 * 359.44817 * 13 12 11 23 23 F 1.35097 * 120.19462 * 180.25155 * 22 13 12 24 24 H 0.97003 * 119.99860 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.04550 * 359.95274 * 10 9 7 26 26 H 1.08000 * 119.80469 * 180.02562 * 11 10 9 27 27 H 1.07999 * 119.76969 * 180.27452 * 12 11 10 28 28 H 0.97004 * 120.00195 * 179.72659 * 14 13 12 29 29 H 1.09000 * 109.47820 * 60.00134 * 15 14 13 30 30 H 1.09005 * 109.46953 * 299.99371 * 15 14 13 31 31 H 1.08007 * 128.01356 * 359.97438 * 17 16 15 32 32 H 0.96707 * 114.00076 * 89.99391 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0493 -1.2341 0.2864 9 6 1.3521 -2.4065 -0.3730 10 6 0.2220 -2.3624 -1.2118 11 6 -0.4110 -3.5292 -1.5717 12 6 0.0605 -4.7517 -1.1178 13 6 1.1717 -4.8133 -0.2842 14 7 1.6349 -6.0518 0.1722 15 6 0.9457 -7.2826 -0.2234 16 6 1.6381 -8.4680 0.3982 17 6 1.3669 -9.0236 1.6014 18 6 2.2974 -10.0904 1.7036 19 8 2.4331 -10.9563 2.7396 20 7 2.9947 -10.0738 0.5993 21 8 2.6435 -9.1783 -0.1333 22 6 1.8246 -3.6491 0.0906 23 9 2.9075 -3.7067 0.8962 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1475 -1.4135 -1.5719 26 1 -1.2775 -3.4934 -2.2154 27 1 -0.4416 -5.6621 -1.4101 28 1 2.4124 -6.0958 0.7505 29 1 0.9660 -7.3777 -1.3090 30 1 -0.0886 -7.2458 0.1189 31 1 0.6188 -8.7222 2.3198 32 1 1.8894 -11.7521 2.6610 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169484947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:38 Heat of formation + Delta-G solvation = 1.974766 kcal Electronic energy + Delta-G solvation = -20334.435414 eV Core-core repulsion = 16792.183394 eV Total energy + Delta-G solvation = -3542.252020 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.12884 -45.15301 -38.15945 -37.82606 -35.68766 -33.68722 -32.85477 -31.81225 -29.58940 -28.32833 -25.62466 -25.21139 -23.67243 -21.95365 -20.82736 -20.61178 -18.64621 -17.83849 -17.52622 -17.08164 -16.17633 -15.88672 -15.22129 -15.06347 -14.74567 -14.47770 -14.06406 -13.91696 -13.61868 -13.23896 -13.15373 -12.85487 -12.39154 -11.83173 -11.60930 -11.20569 -11.10426 -11.00914 -10.77330 -10.51148 -10.28557 -9.99863 -9.80054 -9.52430 -9.42809 -8.95829 -7.44548 -6.87616 -6.40807 -4.44946 1.10583 1.78075 2.66836 2.78741 2.94437 3.05345 3.11725 3.16836 3.19710 3.88398 4.07933 4.26438 4.53768 4.72601 4.98343 5.06648 5.48180 5.51631 5.63986 5.67274 5.89596 6.14212 6.57429 6.76963 6.89814 6.97806 7.11649 7.16079 7.49537 7.66071 7.95517 7.96516 8.04411 8.21211 8.30287 8.57540 8.74079 8.88557 10.08151 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.036041 B = 0.003587 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.715077 B = 7804.499212 C = 8245.816662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.117 3.883 10 C -0.180 4.180 11 C -0.077 4.077 12 C -0.287 4.287 13 C 0.204 3.796 14 N -0.758 5.758 15 C 0.218 3.782 16 C -0.023 4.023 17 C -0.228 4.228 18 C 0.196 3.804 19 O -0.450 6.450 20 N -0.373 5.373 21 O 0.123 5.877 22 C -0.093 4.093 23 F -0.167 7.167 24 H 0.282 0.718 25 H 0.123 0.877 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.397 0.603 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.180 0.820 32 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -12.602 0.421 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.480 4.480 8 H 0.101 0.899 9 C 0.114 3.886 10 C -0.201 4.201 11 C -0.097 4.097 12 C -0.310 4.310 13 C 0.105 3.895 14 N -0.394 5.394 15 C 0.092 3.908 16 C -0.086 4.086 17 C -0.251 4.251 18 C -0.003 4.003 19 O -0.255 6.255 20 N -0.084 5.084 21 O 0.052 5.948 22 C -0.118 4.118 23 F -0.146 7.146 24 H 0.093 0.907 25 H 0.141 0.859 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.231 0.769 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.198 0.802 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.933 -12.945 0.207 12.980 hybrid contribution -0.175 0.507 0.923 1.068 sum -1.108 -12.437 1.130 12.538 Atomic orbital electron populations 1.69851 1.07632 1.29417 1.33951 1.25926 0.94750 1.01481 0.92005 0.86206 0.81137 0.80508 0.78639 1.18227 1.19529 1.19863 1.19567 0.98431 0.90947 1.39026 0.89927 1.17412 0.91685 0.90251 0.89302 1.21055 0.99404 0.97266 1.02352 1.20470 0.98043 0.92507 0.98641 1.19719 1.02402 0.97171 1.11735 1.17347 0.94322 0.82525 0.95298 1.44200 1.35188 1.01782 1.58277 1.19497 0.94228 0.77867 0.99217 1.24484 0.91986 0.97577 0.94595 1.22673 1.04220 0.99265 0.98966 1.21307 0.95256 0.95087 0.88652 1.84856 1.69455 1.34156 1.36987 1.74104 1.22072 1.08217 1.04051 1.84952 1.40336 1.31770 1.37737 1.17262 0.94055 0.93187 1.07250 1.91215 1.53677 1.97113 1.72595 0.90694 0.85949 0.88786 0.88539 0.76926 0.90142 0.89174 0.80243 0.74250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.59 10.96 55.55 0.61 -18.98 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 3 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.45 -12.00 8.78 -37.78 -0.33 -12.34 16 8 H 0.08 2.20 7.73 -52.48 -0.41 1.79 16 9 C 0.12 3.10 5.58 -106.79 -0.60 2.51 16 10 C -0.18 -4.48 8.69 -38.86 -0.34 -4.82 16 11 C -0.08 -1.69 10.01 -39.68 -0.40 -2.08 16 12 C -0.29 -5.86 9.32 -39.12 -0.36 -6.22 16 13 C 0.20 4.37 6.65 -83.73 -0.56 3.81 16 14 N -0.76 -13.11 5.73 -59.78 -0.34 -13.45 16 15 C 0.22 2.80 5.47 -5.19 -0.03 2.77 16 16 C -0.02 -0.28 6.85 -35.36 -0.24 -0.52 16 17 C -0.23 -2.57 11.10 -39.23 -0.44 -3.01 16 18 C 0.20 2.42 8.62 -16.66 -0.14 2.28 16 19 O -0.45 -4.59 13.65 -18.82 -0.26 -4.84 16 20 N -0.37 -5.25 12.10 30.38 0.37 -4.88 16 21 O 0.12 1.67 11.19 17.07 0.19 1.86 16 22 C -0.09 -2.33 7.32 -38.47 -0.28 -2.61 16 23 F -0.17 -4.16 16.08 2.25 0.04 -4.13 16 24 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 25 H 0.12 3.12 6.16 -52.48 -0.32 2.79 16 26 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.10 1.65 6.70 -52.49 -0.35 1.30 16 28 H 0.40 6.93 7.94 -40.82 -0.32 6.61 16 29 H 0.08 0.97 7.93 -51.93 -0.41 0.56 16 30 H 0.09 1.04 7.95 -51.93 -0.41 0.63 16 31 H 0.18 1.66 8.06 -52.48 -0.42 1.23 16 32 H 0.40 1.76 9.06 45.56 0.41 2.17 16 LS Contribution 292.03 15.07 4.40 4.40 Total: -1.00 -29.76 292.03 -5.63 -35.39 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -1.80 Total: 9.69 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -3.80 Total: -18.42 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.63 Total: -37.31 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -0.07 Total: -2.98 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.04 Total: -4.13 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.76 -5.63 -35.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169484947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.364 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds