Wall clock time and date at job start Tue Mar 31 2020 00:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48491 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47051 * 299.99933 * 3 2 1 6 6 H 1.48502 * 109.46904 * 59.99624 * 3 2 1 7 7 C 1.39924 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00055 * 197.79668 * 7 2 1 9 9 C 1.41319 * 119.99852 * 17.79630 * 7 2 1 10 10 C 1.40815 * 120.23054 * 24.59325 * 9 7 2 11 11 C 1.37538 * 119.91134 * 179.97438 * 10 9 7 12 12 C 1.38664 * 120.38340 * 359.72320 * 11 10 9 13 13 C 1.39048 * 120.46607 * 0.55272 * 12 11 10 14 14 N 1.39888 * 119.96119 * 179.72258 * 13 12 11 15 15 C 1.46497 * 119.99846 * 359.72918 * 14 13 12 16 16 C 1.50704 * 109.47101 * 180.02562 * 15 14 13 17 17 C 1.35269 * 126.71424 * 89.99805 * 16 15 14 18 18 C 1.41930 * 103.96455 * 180.24100 * 17 16 15 19 19 O 1.35705 * 126.88199 * 179.75996 * 18 17 16 20 20 N 1.30618 * 106.23556 * 359.60810 * 18 17 16 21 21 O 1.20913 * 111.50215 * 0.41670 * 20 18 17 22 22 C 1.38634 * 120.08132 * 359.44817 * 13 12 11 23 23 F 1.35097 * 120.19462 * 180.25155 * 22 13 12 24 24 H 0.97003 * 119.99860 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.04550 * 359.95274 * 10 9 7 26 26 H 1.08000 * 119.80469 * 180.02562 * 11 10 9 27 27 H 1.07999 * 119.76969 * 180.27452 * 12 11 10 28 28 H 0.97004 * 120.00195 * 179.72659 * 14 13 12 29 29 H 1.09000 * 109.47820 * 60.00134 * 15 14 13 30 30 H 1.09005 * 109.46953 * 299.99371 * 15 14 13 31 31 H 1.08007 * 128.01356 * 359.97438 * 17 16 15 32 32 H 0.96707 * 114.00076 * 89.99391 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0493 -1.2341 0.2864 9 6 1.3521 -2.4065 -0.3730 10 6 0.2220 -2.3624 -1.2118 11 6 -0.4110 -3.5292 -1.5717 12 6 0.0605 -4.7517 -1.1178 13 6 1.1717 -4.8133 -0.2842 14 7 1.6349 -6.0518 0.1722 15 6 0.9457 -7.2826 -0.2234 16 6 1.6381 -8.4680 0.3982 17 6 1.3669 -9.0236 1.6014 18 6 2.2974 -10.0904 1.7036 19 8 2.4331 -10.9563 2.7396 20 7 2.9947 -10.0738 0.5993 21 8 2.6435 -9.1783 -0.1333 22 6 1.8246 -3.6491 0.0906 23 9 2.9075 -3.7067 0.8962 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1475 -1.4135 -1.5719 26 1 -1.2775 -3.4934 -2.2154 27 1 -0.4416 -5.6621 -1.4101 28 1 2.4124 -6.0958 0.7505 29 1 0.9660 -7.3777 -1.3090 30 1 -0.0886 -7.2458 0.1189 31 1 0.6188 -8.7222 2.3198 32 1 1.8894 -11.7521 2.6610 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169484947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:33 Heat of formation + Delta-G solvation = -20.251888 kcal Electronic energy + Delta-G solvation = -20335.399234 eV Core-core repulsion = 16792.183394 eV Total energy + Delta-G solvation = -3543.215840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -49.03871 -46.10791 -39.47981 -38.97058 -37.17415 -35.29292 -33.91722 -32.98990 -31.39956 -29.78975 -27.25596 -26.73245 -24.60541 -23.09497 -22.49646 -22.19220 -19.66948 -19.22667 -18.85481 -18.06374 -17.81862 -17.47974 -16.88769 -16.32429 -16.03892 -16.00005 -15.51680 -15.16713 -14.94402 -14.80576 -14.46407 -14.19638 -13.68388 -13.58685 -13.22369 -12.95571 -12.71059 -12.58071 -12.14138 -11.79648 -11.73686 -11.42624 -11.17817 -11.14623 -10.72060 -10.58396 -9.28147 -8.68259 -8.03981 -6.38241 0.14579 0.90741 0.91575 1.16852 1.38974 1.52075 1.54378 1.85677 2.21559 2.36834 2.71512 2.74993 3.31525 3.66648 3.79277 4.09017 4.14453 4.20025 4.50763 4.58267 4.68681 4.84369 4.89516 5.06285 5.10659 5.30499 5.45896 5.74972 5.90752 6.13756 6.22122 6.39808 6.46082 6.73992 6.76059 6.86255 7.03280 7.06953 8.29475 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.036041 B = 0.003587 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.715077 B = 7804.499212 C = 8245.816662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.042 3.958 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.256 1.256 6 H -0.263 1.263 7 C -0.497 4.497 8 H 0.064 0.936 9 C 0.088 3.912 10 C -0.210 4.210 11 C -0.071 4.071 12 C -0.275 4.275 13 C 0.214 3.786 14 N -0.754 5.754 15 C 0.216 3.784 16 C -0.027 4.027 17 C -0.217 4.217 18 C 0.197 3.803 19 O -0.457 6.457 20 N -0.400 5.400 21 O 0.109 5.891 22 C -0.133 4.133 23 F -0.177 7.177 24 H 0.292 0.708 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.142 0.858 28 H 0.394 0.606 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.203 0.797 32 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 -13.957 0.270 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.175 4.175 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.181 1.181 6 H -0.188 1.188 7 C -0.526 4.526 8 H 0.082 0.918 9 C 0.085 3.915 10 C -0.230 4.230 11 C -0.090 4.090 12 C -0.298 4.298 13 C 0.113 3.887 14 N -0.388 5.388 15 C 0.092 3.908 16 C -0.090 4.090 17 C -0.240 4.240 18 C -0.002 4.002 19 O -0.266 6.266 20 N -0.114 5.114 21 O 0.040 5.960 22 C -0.158 4.158 23 F -0.156 7.156 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.145 0.855 27 H 0.159 0.841 28 H 0.227 0.773 29 H 0.113 0.887 30 H 0.133 0.867 31 H 0.220 0.780 32 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -2.269 -14.365 0.055 14.543 hybrid contribution 0.186 0.666 1.008 1.222 sum -2.082 -13.699 1.062 13.897 Atomic orbital electron populations 1.69868 1.08693 1.30788 1.34253 1.26667 0.95565 1.04179 0.91080 0.85178 0.79122 0.76176 0.79361 1.18965 1.18060 1.18784 1.19683 0.98073 0.92800 1.42003 0.91760 1.17767 0.92724 0.90978 0.90057 1.21012 1.00194 0.98040 1.03790 1.20859 0.98240 0.91936 0.97928 1.20184 1.01398 0.98362 1.09871 1.17429 0.93781 0.83084 0.94391 1.44343 1.35096 1.01958 1.57429 1.19746 0.94828 0.75939 1.00269 1.24406 0.92045 0.97575 0.95005 1.22959 1.04008 0.98288 0.98731 1.21515 0.94767 0.95491 0.88389 1.84810 1.70383 1.35237 1.36196 1.74097 1.23172 1.09044 1.05092 1.84922 1.40910 1.32051 1.38076 1.17651 0.94912 0.94491 1.08712 1.91168 1.54251 1.97200 1.72996 0.89740 0.87476 0.85548 0.84077 0.77256 0.88651 0.86656 0.78013 0.71341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.49 10.96 21.82 0.24 -41.25 16 2 C 0.04 2.11 5.14 85.25 0.44 2.54 16 3 Si 0.98 38.56 29.60 68.60 2.03 40.59 16 4 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.50 -27.81 8.78 23.44 0.21 -27.61 16 8 H 0.06 3.66 7.73 -2.91 -0.02 3.64 16 9 C 0.09 4.84 5.58 -21.27 -0.12 4.72 16 10 C -0.21 -10.58 8.69 22.73 0.20 -10.38 16 11 C -0.07 -2.95 10.01 22.21 0.22 -2.72 16 12 C -0.28 -10.36 9.32 22.57 0.21 -10.15 16 13 C 0.21 8.89 6.65 38.14 0.25 9.14 16 14 N -0.75 -24.47 5.73 -343.06 -1.97 -26.44 16 15 C 0.22 4.78 5.47 85.63 0.47 5.25 16 16 C -0.03 -0.59 6.85 25.00 0.17 -0.42 16 17 C -0.22 -4.26 11.10 22.50 0.25 -4.01 16 18 C 0.20 4.45 8.62 85.79 0.74 5.18 16 19 O -0.46 -8.26 13.65 -90.25 -1.23 -9.49 16 20 N -0.40 -10.70 12.10 -172.59 -2.09 -12.79 16 21 O 0.11 2.80 11.19 71.24 0.80 3.60 16 22 C -0.13 -6.80 7.32 22.99 0.17 -6.63 16 23 F -0.18 -9.16 16.08 44.97 0.72 -8.44 16 24 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 25 H 0.11 5.63 6.16 -2.91 -0.02 5.61 16 26 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 27 H 0.14 4.04 6.70 -2.91 -0.02 4.02 16 28 H 0.39 13.32 7.94 -92.71 -0.74 12.58 16 29 H 0.10 1.90 7.93 -2.39 -0.02 1.89 16 30 H 0.12 2.07 7.95 -2.38 -0.02 2.06 16 31 H 0.20 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.43 2.62 9.06 -74.05 -0.67 1.95 16 Total: -1.00 -67.00 292.03 1.51 -65.49 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -0.20 Total: 23.81 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 3.21 Total: -35.08 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -3.81 Total: -80.48 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.43 Total: -5.89 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 0.72 Total: -8.44 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -67.00 1.51 -65.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169484947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.239 kcal (2) G-P(sol) polarization free energy of solvation -67.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds