Wall clock time and date at job start Tue Mar 31 2020 00:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.36634 * 125.46110 * 1.92944 * 3 2 1 5 5 C 1.37611 * 113.27078 * 179.71606 * 4 3 2 6 6 C 1.33714 * 115.09417 * 0.49116 * 5 4 3 7 7 C 1.50702 * 124.50829 * 179.78697 * 6 5 4 8 8 O 1.42900 * 109.46991 * 89.73010 * 7 6 5 9 9 C 1.42903 * 113.99968 * 180.02562 * 8 7 6 10 10 H 1.09002 * 110.64037 * 328.30570 * 9 8 7 11 11 C 1.55158 * 110.71913 * 204.97363 * 9 8 7 12 12 C 1.55130 * 101.48238 * 205.96826 * 11 9 8 13 13 N 1.47424 * 104.72643 * 37.29415 * 12 11 9 14 14 C 1.36929 * 125.64714 * 155.81771 * 13 12 11 15 15 H 1.08005 * 119.99907 * 193.74378 * 14 13 12 16 16 C 1.38807 * 120.00457 * 13.74616 * 14 13 12 17 17 N 1.31620 * 119.99844 * 8.44559 * 16 14 13 18 18 Si 1.86800 * 120.00264 * 188.44682 * 16 14 13 19 19 H 1.48501 * 109.47290 * 94.84336 * 18 16 14 20 20 H 1.48503 * 109.47352 * 214.84290 * 18 16 14 21 21 H 1.48498 * 109.47058 * 334.83997 * 18 16 14 22 22 C 1.47024 * 108.69923 * 335.55514 * 13 12 11 23 23 S 1.70608 * 110.97855 * 359.52157 * 6 5 4 24 24 H 1.07997 * 123.36327 * 359.97438 * 4 3 2 25 25 H 1.07995 * 122.45500 * 180.30288 * 5 4 3 26 26 H 1.08993 * 109.47714 * 329.72502 * 7 6 5 27 27 H 1.09006 * 109.46680 * 209.71992 * 7 6 5 28 28 H 1.09004 * 111.00369 * 324.20196 * 11 9 8 29 29 H 1.08994 * 111.00788 * 88.01509 * 11 9 8 30 30 H 1.09004 * 110.49527 * 278.44593 * 12 11 9 31 31 H 1.09004 * 110.33889 * 156.05816 * 12 11 9 32 32 H 0.97003 * 120.00088 * 180.02562 * 17 16 14 33 33 H 1.08994 * 109.88202 * 120.70714 * 22 13 12 34 34 H 1.09005 * 109.87697 * 241.71823 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3611 -1.1113 -0.0375 5 6 4.7061 -0.8201 -0.0339 6 6 5.0041 0.4825 0.0154 7 6 6.4050 1.0377 0.0335 8 8 6.8471 1.2589 -1.3072 9 6 8.1716 1.7870 -1.4029 10 1 8.3946 2.4227 -0.5460 11 6 8.3574 2.5657 -2.7320 12 6 9.8881 2.4419 -2.9510 13 7 10.2240 1.0824 -2.4899 14 6 11.3075 0.3482 -2.8923 15 1 11.3539 -0.7089 -2.6759 16 6 12.3463 0.9625 -3.5781 17 7 12.3721 2.2731 -3.6971 18 14 13.7076 -0.0707 -4.3321 19 1 13.3928 -0.3398 -5.7582 20 1 14.9953 0.6632 -4.2395 21 1 13.8171 -1.3570 -3.5981 22 6 9.2062 0.6482 -1.5219 23 16 3.5874 1.4325 0.0476 24 1 2.9715 -2.1179 -0.0710 25 1 5.4653 -1.5874 -0.0655 26 1 7.0711 0.3274 0.5232 27 1 6.4149 1.9810 0.5796 28 1 7.8038 2.0922 -3.5429 29 1 8.0632 3.6090 -2.6181 30 1 10.4200 3.1859 -2.3579 31 1 10.1300 2.5546 -4.0079 32 1 13.0978 2.7024 -4.1766 33 1 8.7191 -0.2595 -1.8781 34 1 9.6708 0.4637 -0.5532 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223289023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:41 Heat of formation + Delta-G solvation = 45.002473 kcal Electronic energy + Delta-G solvation = -18096.017109 eV Core-core repulsion = 15121.844087 eV Total energy + Delta-G solvation = -2974.173022 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -38.94775 -38.16597 -36.72917 -35.85827 -32.40224 -31.21268 -29.19196 -27.48671 -26.73153 -24.39476 -23.58650 -21.19866 -20.37903 -20.20938 -18.57442 -16.99701 -16.82899 -16.54191 -15.35559 -14.88761 -14.68983 -14.44762 -14.24984 -13.93456 -13.65062 -13.34595 -13.02281 -12.72009 -12.44880 -12.37751 -12.02112 -11.76575 -11.56416 -11.27446 -11.06253 -10.89900 -10.79918 -10.40610 -10.10822 -9.85766 -9.75834 -9.27113 -9.06658 -8.87009 -8.62602 -6.81829 -5.78892 -3.13357 0.10117 0.86079 1.54526 2.05863 2.60090 3.00795 3.38104 3.43525 3.45424 3.61620 3.83881 4.47321 4.63328 4.85036 5.04660 5.19291 5.24009 5.34133 5.42945 5.47166 5.62671 5.66278 5.77363 5.85149 6.01983 6.24938 6.44716 6.50811 6.54709 6.65692 7.11828 7.40006 7.46631 7.54830 7.74092 8.22424 9.15209 9.76842 10.44668 11.34634 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.044619 B = 0.003042 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.385264 B = 9202.295101 C = 9523.068347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.286 3.714 3 C -0.179 4.179 4 C -0.055 4.055 5 C -0.131 4.131 6 C -0.187 4.187 7 C 0.126 3.874 8 O -0.370 6.370 9 C 0.076 3.924 10 H 0.067 0.933 11 C -0.138 4.138 12 C 0.175 3.825 13 N -0.600 5.600 14 C -0.231 4.231 15 H 0.075 0.925 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.116 3.884 23 S 0.267 5.733 24 H 0.154 0.846 25 H 0.153 0.847 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.254 0.746 33 H 0.034 0.966 34 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.165 -1.727 9.245 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.029 4.029 3 C -0.300 4.300 4 C -0.092 4.092 5 C -0.161 4.161 6 C -0.308 4.308 7 C 0.048 3.952 8 O -0.289 6.289 9 C 0.018 3.982 10 H 0.085 0.915 11 C -0.177 4.177 12 C 0.050 3.950 13 N -0.327 5.327 14 C -0.359 4.359 15 H 0.093 0.907 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.010 4.010 23 S 0.536 5.464 24 H 0.171 0.829 25 H 0.170 0.830 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -17.098 -0.134 9.042 19.342 hybrid contribution 1.742 -2.072 -0.232 2.717 sum -15.356 -2.206 8.809 17.840 Atomic orbital electron populations 1.81299 1.11208 1.06666 1.09819 1.24311 0.90946 0.94302 0.93376 1.20433 0.89237 0.99465 1.20868 1.20722 0.92147 0.98621 0.97719 1.19991 0.96305 0.96098 1.03730 1.24091 1.00463 0.98194 1.08020 1.20789 0.88432 0.99528 0.86481 1.88012 1.31906 1.85165 1.23862 1.23285 0.80864 0.95013 0.99006 0.91532 1.23174 1.00727 0.98240 0.95553 1.21428 0.86509 0.86760 1.00344 1.44345 1.26088 1.15516 1.46766 1.19018 0.94557 0.91216 1.31109 0.90674 1.24885 0.97851 0.95718 1.01818 1.69939 1.33391 1.07183 1.45958 0.86098 0.81270 0.79105 0.79265 1.21522 1.21705 1.20524 1.21735 0.90396 0.95561 0.93341 1.83222 0.92345 1.04881 1.66001 0.82876 0.82963 0.90717 0.92073 0.91043 0.91745 0.94995 0.91408 0.93617 0.94853 0.96071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.15 18.54 41.84 0.78 -4.37 16 2 C 0.29 3.01 15.83 -22.47 -0.36 2.65 16 3 C -0.18 -1.61 6.32 -38.24 -0.24 -1.85 16 4 C -0.06 -0.44 10.24 -40.39 -0.41 -0.85 16 5 C -0.13 -1.14 10.00 -41.40 -0.41 -1.56 16 6 C -0.19 -1.83 5.90 -35.89 -0.21 -2.04 16 7 C 0.13 1.39 6.23 36.01 0.22 1.61 16 8 O -0.37 -5.57 10.05 -35.23 -0.35 -5.93 16 9 C 0.08 1.29 3.40 -24.90 -0.08 1.20 16 10 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 11 C -0.14 -2.55 6.82 -24.46 -0.17 -2.72 16 12 C 0.17 4.12 5.39 -2.41 -0.01 4.11 16 13 N -0.60 -15.20 3.39 -169.93 -0.58 -15.78 16 14 C -0.23 -6.39 10.22 -15.06 -0.15 -6.54 16 15 H 0.08 2.02 7.84 -52.48 -0.41 1.61 16 16 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 17 N -0.92 -26.59 10.80 55.49 0.60 -25.99 16 18 Si 0.91 21.79 29.56 -169.99 -5.03 16.76 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.12 2.38 7.02 -3.07 -0.02 2.36 16 23 S 0.27 2.31 23.01 -107.50 -2.47 -0.16 16 24 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 25 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.80 8.00 -51.93 -0.42 0.39 16 31 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -31.11 313.48 -8.40 -39.50 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: -4.12 Total: -4.87 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.95 Total: -3.88 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.80 Total: -46.14 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.35 Total: -5.93 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.47 Total: -0.16 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.11 -8.40 -39.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223289023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.506 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds