Wall clock time and date at job start Tue Mar 31 2020 00:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.36634 * 125.46110 * 1.92944 * 3 2 1 5 5 C 1.37611 * 113.27078 * 179.71606 * 4 3 2 6 6 C 1.33714 * 115.09417 * 0.49116 * 5 4 3 7 7 C 1.50702 * 124.50829 * 179.78697 * 6 5 4 8 8 O 1.42900 * 109.46991 * 89.73010 * 7 6 5 9 9 C 1.42903 * 113.99968 * 180.02562 * 8 7 6 10 10 H 1.09002 * 110.64037 * 328.30570 * 9 8 7 11 11 C 1.55158 * 110.71913 * 204.97363 * 9 8 7 12 12 C 1.55130 * 101.48238 * 205.96826 * 11 9 8 13 13 N 1.47424 * 104.72643 * 37.29415 * 12 11 9 14 14 C 1.36929 * 125.64714 * 155.81771 * 13 12 11 15 15 H 1.08005 * 119.99907 * 193.74378 * 14 13 12 16 16 C 1.38807 * 120.00457 * 13.74616 * 14 13 12 17 17 N 1.31620 * 119.99844 * 8.44559 * 16 14 13 18 18 Si 1.86800 * 120.00264 * 188.44682 * 16 14 13 19 19 H 1.48501 * 109.47290 * 94.84336 * 18 16 14 20 20 H 1.48503 * 109.47352 * 214.84290 * 18 16 14 21 21 H 1.48498 * 109.47058 * 334.83997 * 18 16 14 22 22 C 1.47024 * 108.69923 * 335.55514 * 13 12 11 23 23 S 1.70608 * 110.97855 * 359.52157 * 6 5 4 24 24 H 1.07997 * 123.36327 * 359.97438 * 4 3 2 25 25 H 1.07995 * 122.45500 * 180.30288 * 5 4 3 26 26 H 1.08993 * 109.47714 * 329.72502 * 7 6 5 27 27 H 1.09006 * 109.46680 * 209.71992 * 7 6 5 28 28 H 1.09004 * 111.00369 * 324.20196 * 11 9 8 29 29 H 1.08994 * 111.00788 * 88.01509 * 11 9 8 30 30 H 1.09004 * 110.49527 * 278.44593 * 12 11 9 31 31 H 1.09004 * 110.33889 * 156.05816 * 12 11 9 32 32 H 0.97003 * 120.00088 * 180.02562 * 17 16 14 33 33 H 1.08994 * 109.88202 * 120.70714 * 22 13 12 34 34 H 1.09005 * 109.87697 * 241.71823 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3611 -1.1113 -0.0375 5 6 4.7061 -0.8201 -0.0339 6 6 5.0041 0.4825 0.0154 7 6 6.4050 1.0377 0.0335 8 8 6.8471 1.2589 -1.3072 9 6 8.1716 1.7870 -1.4029 10 1 8.3946 2.4227 -0.5460 11 6 8.3574 2.5657 -2.7320 12 6 9.8881 2.4419 -2.9510 13 7 10.2240 1.0824 -2.4899 14 6 11.3075 0.3482 -2.8923 15 1 11.3539 -0.7089 -2.6759 16 6 12.3463 0.9625 -3.5781 17 7 12.3721 2.2731 -3.6971 18 14 13.7076 -0.0707 -4.3321 19 1 13.3928 -0.3398 -5.7582 20 1 14.9953 0.6632 -4.2395 21 1 13.8171 -1.3570 -3.5981 22 6 9.2062 0.6482 -1.5219 23 16 3.5874 1.4325 0.0476 24 1 2.9715 -2.1179 -0.0710 25 1 5.4653 -1.5874 -0.0655 26 1 7.0711 0.3274 0.5232 27 1 6.4149 1.9810 0.5796 28 1 7.8038 2.0922 -3.5429 29 1 8.0632 3.6090 -2.6181 30 1 10.4200 3.1859 -2.3579 31 1 10.1300 2.5546 -4.0079 32 1 13.0978 2.7024 -4.1766 33 1 8.7191 -0.2595 -1.8781 34 1 9.6708 0.4637 -0.5532 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223289023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:39 Heat of formation + Delta-G solvation = 26.953491 kcal Electronic energy + Delta-G solvation = -18096.799772 eV Core-core repulsion = 15121.844087 eV Total energy + Delta-G solvation = -2974.955685 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.04315 -39.16125 -37.76438 -37.17125 -34.23925 -32.20749 -30.92753 -28.93742 -27.79347 -26.23004 -24.38685 -22.15091 -21.88849 -21.74307 -19.36948 -18.86005 -17.94809 -17.42181 -16.74086 -16.38741 -15.96958 -15.59411 -15.28995 -15.09294 -14.83983 -14.42871 -14.24272 -13.92786 -13.63367 -13.47739 -13.38221 -13.20595 -12.81817 -12.77468 -12.58616 -12.32721 -12.05556 -11.97185 -11.83843 -11.78869 -11.39964 -10.69917 -10.49075 -9.80392 -9.52315 -8.83430 -7.88724 -5.25123 -0.61321 0.16069 0.85892 1.35060 1.47794 1.49472 1.58473 1.80645 2.23100 2.49034 2.77891 2.86257 3.32329 3.73664 3.75432 3.92452 4.06532 4.17238 4.25001 4.38515 4.53741 4.59715 4.68895 4.82392 4.97555 5.03521 5.05663 5.08533 5.18305 5.37280 5.44556 5.59564 5.71256 6.20099 6.29566 6.31921 7.08317 7.75607 8.42301 9.23630 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.044619 B = 0.003042 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.385264 B = 9202.295101 C = 9523.068347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.306 3.694 3 C -0.191 4.191 4 C -0.044 4.044 5 C -0.130 4.130 6 C -0.202 4.202 7 C 0.119 3.881 8 O -0.380 6.380 9 C 0.096 3.904 10 H 0.090 0.910 11 C -0.125 4.125 12 C 0.179 3.821 13 N -0.624 5.624 14 C -0.246 4.246 15 H 0.077 0.923 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.978 3.022 19 H -0.287 1.287 20 H -0.293 1.293 21 H -0.267 1.267 22 C 0.111 3.889 23 S 0.284 5.716 24 H 0.176 0.824 25 H 0.163 0.837 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.010 0.990 31 H 0.030 0.970 32 H 0.250 0.750 33 H 0.031 0.969 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.872 -2.487 10.139 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.009 4.009 3 C -0.312 4.312 4 C -0.081 4.081 5 C -0.161 4.161 6 C -0.323 4.323 7 C 0.041 3.959 8 O -0.299 6.299 9 C 0.037 3.963 10 H 0.107 0.893 11 C -0.163 4.163 12 C 0.054 3.946 13 N -0.352 5.352 14 C -0.375 4.375 15 H 0.095 0.905 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.806 3.194 19 H -0.214 1.214 20 H -0.219 1.219 21 H -0.191 1.191 22 C -0.014 4.014 23 S 0.553 5.447 24 H 0.194 0.806 25 H 0.181 0.819 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.028 0.972 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -17.842 -0.903 9.960 20.453 hybrid contribution 1.923 -1.882 -0.462 2.730 sum -15.919 -2.785 9.498 18.745 Atomic orbital electron populations 1.81318 1.12363 1.07972 1.11411 1.24441 0.91077 0.93141 0.92213 1.20504 0.88510 1.00249 1.21959 1.20964 0.91632 0.99422 0.96071 1.20199 0.96895 0.96086 1.02954 1.24108 1.00252 0.98852 1.09095 1.21035 0.89154 1.01002 0.84701 1.87982 1.30266 1.85045 1.26634 1.22950 0.81061 0.93456 0.98784 0.89261 1.22981 0.96381 1.00456 0.96531 1.21221 0.90060 0.85783 0.97568 1.44664 1.26390 1.15936 1.48175 1.19381 0.95428 0.91744 1.30948 0.90502 1.25707 1.00318 0.96861 1.02646 1.70123 1.33952 1.08650 1.46797 0.85077 0.78117 0.77988 0.78240 1.21441 1.21941 1.19147 1.21913 0.90289 0.96904 0.92297 1.83176 0.91622 1.04298 1.65579 0.80620 0.81905 0.89828 0.90102 0.91481 0.88741 0.97228 0.95100 0.94135 0.95128 0.95476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.96 18.54 19.00 0.35 -10.61 16 2 C 0.31 6.01 15.83 88.33 1.40 7.41 16 3 C -0.19 -3.02 6.32 23.14 0.15 -2.87 16 4 C -0.04 -0.58 10.24 21.75 0.22 -0.35 16 5 C -0.13 -1.91 10.00 21.09 0.21 -1.70 16 6 C -0.20 -3.40 5.90 24.66 0.15 -3.26 16 7 C 0.12 2.25 6.23 71.24 0.44 2.69 16 8 O -0.38 -10.36 10.05 -148.98 -1.50 -11.86 16 9 C 0.10 3.01 3.40 31.78 0.11 3.12 16 10 H 0.09 2.44 7.88 -2.39 -0.02 2.42 16 11 C -0.13 -4.43 6.82 32.06 0.22 -4.21 16 12 C 0.18 8.56 5.39 86.93 0.47 9.03 16 13 N -0.62 -31.82 3.39 -691.55 -2.35 -34.16 16 14 C -0.25 -13.73 10.22 84.03 0.86 -12.88 16 15 H 0.08 4.14 7.84 -2.91 -0.02 4.11 16 16 C -0.06 -3.47 5.40 84.86 0.46 -3.01 16 17 N -0.95 -56.23 10.80 21.65 0.23 -55.99 16 18 Si 0.98 45.15 29.56 68.60 2.03 47.18 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 C 0.11 4.43 7.02 86.73 0.61 5.04 16 23 S 0.28 4.27 23.01 -56.49 -1.30 2.97 16 24 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 25 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.23 8.11 -2.38 -0.02 1.21 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.01 0.50 8.00 -2.39 -0.02 0.48 16 31 H 0.03 1.67 7.16 -2.38 -0.02 1.65 16 32 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.03 1.23 8.06 -2.39 -0.02 1.21 16 34 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -67.79 313.48 3.87 -63.93 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: 1.11 Total: -0.46 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.29 Total: -0.99 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -1.76 Total: -100.76 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.50 Total: -11.86 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.30 Total: 2.97 kcal Total: -67.79 3.87 -63.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223289023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.881 kcal (2) G-P(sol) polarization free energy of solvation -67.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds