Wall clock time and date at job start Tue Mar 31 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30539 * 1 3 3 Si 1.86802 * 120.00307 * 2 1 4 4 H 1.48508 * 109.46920 * 270.00128 * 3 2 1 5 5 H 1.48503 * 109.46935 * 29.99753 * 3 2 1 6 6 H 1.48498 * 109.47377 * 150.00196 * 3 2 1 7 7 C 1.40326 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99604 * 179.97438 * 7 2 1 9 9 C 1.41829 * 120.00069 * 0.02562 * 7 2 1 10 10 O 1.21815 * 119.99866 * 359.97438 * 9 7 2 11 11 C 1.47526 * 120.00182 * 179.97438 * 9 7 2 12 12 C 1.39850 * 120.20636 * 359.72595 * 11 9 7 13 13 C 1.37692 * 119.90317 * 180.27318 * 12 11 9 14 14 C 1.38689 * 120.32268 * 359.97438 * 13 12 11 15 15 C 1.38088 * 120.41625 * 359.97438 * 14 13 12 16 16 C 1.38666 * 120.09177 * 0.02562 * 15 14 13 17 17 O 1.35638 * 120.16463 * 179.97438 * 16 15 14 18 18 C 1.42900 * 116.99362 * 0.02608 * 17 16 15 19 19 C 1.52998 * 109.46799 * 179.97438 * 18 17 16 20 20 H 1.09001 * 110.28534 * 305.69892 * 19 18 17 21 21 C 1.54458 * 110.32083 * 183.58086 * 19 18 17 22 22 O 1.45003 * 102.81815 * 219.36925 * 21 19 18 23 23 C 1.44380 * 103.29930 * 36.49866 * 22 21 19 24 24 O 1.43793 * 106.17040 * 320.83830 * 23 22 21 25 25 H 0.96999 * 119.99536 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.04682 * 0.24932 * 12 11 9 27 27 H 1.07999 * 119.84033 * 180.02562 * 13 12 11 28 28 H 1.08002 * 119.79426 * 180.02562 * 14 13 12 29 29 H 1.08000 * 119.95672 * 180.02562 * 15 14 13 30 30 H 1.09000 * 109.47190 * 299.99756 * 18 17 16 31 31 H 1.08998 * 109.47844 * 59.99748 * 18 17 16 32 32 H 1.09001 * 110.72594 * 337.65145 * 21 19 18 33 33 H 1.09002 * 110.72831 * 100.94781 * 21 19 18 34 34 H 1.08999 * 110.12250 * 201.66089 * 23 22 21 35 35 H 1.08999 * 110.16754 * 80.03773 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 2.4870 2.0464 -1.4002 5 1 1.4369 2.6527 0.7000 6 1 3.5370 1.4401 0.7000 7 6 2.0070 -1.2153 0.0005 8 1 3.0870 -1.2152 0.0001 9 6 1.2979 -2.4435 0.0005 10 8 0.0797 -2.4435 0.0005 11 6 2.0355 -3.7212 0.0005 12 6 3.4339 -3.7263 -0.0052 13 6 4.1160 -4.9224 -0.0109 14 6 3.4229 -6.1237 -0.0104 15 6 2.0421 -6.1341 -0.0036 16 6 1.3378 -4.9396 0.0021 17 8 -0.0185 -4.9482 0.0082 18 6 -0.6591 -6.2256 0.0090 19 6 -2.1771 -6.0347 0.0168 20 1 -2.4736 -5.3973 0.8497 21 6 -2.8892 -7.4024 0.1081 22 8 -4.0187 -7.2373 -0.7860 23 6 -3.4815 -6.4277 -1.8539 24 8 -2.6155 -5.4645 -1.2295 25 1 -0.4849 0.8401 0.0004 26 1 3.9781 -2.7934 -0.0057 27 1 5.1960 -4.9251 -0.0149 28 1 3.9666 -7.0569 -0.0144 29 1 1.5099 -7.0739 -0.0028 30 1 -0.3667 -6.7792 -0.8833 31 1 -0.3587 -6.7823 0.8966 32 1 -2.2353 -8.2018 -0.2404 33 1 -3.2261 -7.5946 1.1268 34 1 -4.2885 -5.9195 -2.3817 35 1 -2.9135 -7.0485 -2.5468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:58 Heat of formation + Delta-G solvation = -159.891209 kcal Electronic energy + Delta-G solvation = -21404.723991 eV Core-core repulsion = 17946.620489 eV Total energy + Delta-G solvation = -3458.103501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57112 -40.81770 -38.62260 -37.80038 -36.08020 -34.70977 -32.83274 -32.13666 -30.52693 -28.76999 -27.31386 -25.83884 -24.58791 -23.43455 -22.34871 -21.45503 -19.05859 -18.62604 -18.43088 -17.75916 -17.37223 -16.94895 -16.61538 -16.53718 -16.05777 -15.48896 -15.24605 -14.94685 -14.79209 -14.54720 -14.16842 -13.98233 -13.63136 -13.28578 -13.24614 -13.09598 -12.77967 -12.65569 -12.59284 -12.09489 -12.07016 -11.86591 -11.82114 -11.35868 -10.96288 -10.75380 -9.72632 -9.44803 -8.97964 -8.25855 -7.00184 0.27652 0.61845 1.36754 1.38990 1.54486 2.22392 2.23653 2.30958 2.51973 2.92890 3.02122 3.54051 3.63744 3.73757 3.82008 3.98829 4.02842 4.08575 4.18387 4.25564 4.33901 4.38880 4.49890 4.57684 4.62746 4.74493 4.85620 4.92517 5.17901 5.24389 5.41523 5.55300 5.72453 5.87939 5.97467 6.08529 6.64834 6.75514 6.92129 8.36057 8.58192 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.016346 B = 0.005516 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.564485 B = 5075.048110 C = 6605.026501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.021 3.979 3 Si 0.996 3.004 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.244 1.244 7 C -0.552 4.552 8 H 0.092 0.908 9 C 0.364 3.636 10 O -0.572 6.572 11 C -0.196 4.196 12 C -0.064 4.064 13 C -0.168 4.168 14 C -0.071 4.071 15 C -0.223 4.223 16 C 0.127 3.873 17 O -0.309 6.309 18 C 0.040 3.960 19 C 0.048 3.952 20 H 0.080 0.920 21 C 0.038 3.962 22 O -0.392 6.392 23 C 0.192 3.808 24 O -0.409 6.409 25 H 0.279 0.721 26 H 0.132 0.868 27 H 0.157 0.843 28 H 0.167 0.833 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 -15.855 -0.130 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.196 4.196 3 Si 0.814 3.186 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.167 1.167 7 C -0.583 4.583 8 H 0.110 0.890 9 C 0.261 3.739 10 O -0.464 6.464 11 C -0.198 4.198 12 C -0.082 4.082 13 C -0.186 4.186 14 C -0.089 4.089 15 C -0.241 4.241 16 C 0.081 3.919 17 O -0.222 6.222 18 C -0.035 4.035 19 C -0.010 4.010 20 H 0.099 0.901 21 C -0.038 4.038 22 O -0.312 6.312 23 C 0.079 3.921 24 O -0.331 6.331 25 H 0.089 0.911 26 H 0.150 0.850 27 H 0.174 0.826 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.973 -15.559 -0.193 15.685 hybrid contribution 0.073 0.896 -0.076 0.902 sum 2.047 -14.663 -0.269 14.807 Atomic orbital electron populations 1.70157 1.10029 1.29462 1.32730 1.27284 0.95467 1.05591 0.91297 0.85060 0.79112 0.74720 0.79721 1.18348 1.19451 1.16661 1.21432 0.95930 0.92360 1.48622 0.88963 1.18791 0.88505 0.88191 0.78383 1.90507 1.16724 1.89550 1.49663 1.21267 0.95644 0.94764 1.08118 1.21476 0.91430 0.99912 0.95389 1.21383 1.01309 0.91434 1.04492 1.21458 0.92704 0.99317 0.95377 1.21458 0.96399 0.95820 1.10461 1.19703 0.82588 0.94433 0.95215 1.86462 1.16908 1.31258 1.87549 1.23389 0.91700 0.84945 1.03468 1.23714 0.93076 0.96693 0.87528 0.90150 1.24394 0.87458 0.94039 0.97921 1.89416 1.34427 1.71534 1.35825 1.25119 0.92173 0.85447 0.89379 1.89122 1.65985 1.43175 1.34790 0.91125 0.85022 0.82554 0.81569 0.82751 0.90346 0.87881 0.87238 0.84334 0.86195 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -50.07 11.73 21.88 0.26 -49.81 16 2 C 0.02 1.22 5.50 85.39 0.47 1.69 16 3 Si 1.00 41.37 29.56 68.60 2.03 43.39 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.24 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.55 -32.73 8.86 23.67 0.21 -32.52 16 8 H 0.09 4.83 6.02 -2.91 -0.02 4.82 16 9 C 0.36 22.96 6.91 25.61 0.18 23.14 16 10 O -0.57 -41.12 13.71 16.16 0.22 -40.89 16 11 C -0.20 -10.04 5.90 -19.91 -0.12 -10.15 16 12 C -0.06 -2.60 9.43 22.53 0.21 -2.39 16 13 C -0.17 -5.05 10.02 22.25 0.22 -4.83 16 14 C -0.07 -1.89 10.04 22.34 0.22 -1.66 16 15 C -0.22 -7.09 9.03 22.34 0.20 -6.89 16 16 C 0.13 5.72 6.71 22.90 0.15 5.87 16 17 O -0.31 -14.77 8.22 -66.49 -0.55 -15.32 16 18 C 0.04 1.25 4.33 71.98 0.31 1.57 16 19 C 0.05 1.49 4.02 31.09 0.13 1.61 16 20 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 21 C 0.04 0.75 7.38 72.48 0.53 1.29 16 22 O -0.39 -9.82 11.84 -125.98 -1.49 -11.31 16 23 C 0.19 5.04 8.57 113.37 0.97 6.01 16 24 O -0.41 -15.52 11.27 -124.21 -1.40 -16.92 16 25 H 0.28 15.74 8.29 -92.71 -0.77 14.97 16 26 H 0.13 5.20 6.21 -2.91 -0.02 5.18 16 27 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 28 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 29 H 0.15 3.61 6.30 -2.91 -0.02 3.59 16 30 H 0.08 2.10 7.66 -2.39 -0.02 2.08 16 31 H 0.10 2.40 7.66 -2.39 -0.02 2.38 16 32 H 0.11 1.47 7.86 -2.39 -0.02 1.45 16 33 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -90.22 303.04 3.88 -86.34 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.12 Total: 21.79 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 3.70 Total: -17.26 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.26 Total: -49.81 kcal Atomic # 8 Polarization: -81.23 SS G_CDS: -3.22 Total: -84.44 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -90.22 3.88 -86.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.556 kcal (2) G-P(sol) polarization free energy of solvation -90.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds