Wall clock time and date at job start Tue Mar 31 2020 00:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30532 * 1 3 3 Si 1.86797 * 120.00377 * 2 1 4 4 H 1.48493 * 109.47098 * 85.01944 * 3 2 1 5 5 H 1.48503 * 109.47606 * 205.02112 * 3 2 1 6 6 H 1.48504 * 109.47063 * 325.02143 * 3 2 1 7 7 C 1.40348 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99736 * 187.04743 * 7 2 1 9 9 C 1.41757 * 120.00279 * 7.03869 * 7 2 1 10 10 O 1.21825 * 119.99754 * 7.46943 * 9 7 2 11 11 C 1.47563 * 120.00301 * 187.46519 * 9 7 2 12 12 C 1.39945 * 120.09531 * 359.72211 * 11 9 7 13 13 C 1.37600 * 119.90620 * 179.78813 * 12 11 9 14 14 C 1.39156 * 120.09169 * 0.47437 * 13 12 11 15 15 O 1.35661 * 119.90260 * 179.76711 * 14 13 12 16 16 C 1.42903 * 117.00077 * 0.02562 * 15 14 13 17 17 C 1.53003 * 109.46805 * 180.02562 * 16 15 14 18 18 H 1.08998 * 110.65191 * 308.15813 * 17 16 15 19 19 C 1.54458 * 110.72538 * 185.00164 * 17 16 15 20 20 O 1.43887 * 105.08240 * 219.85020 * 19 17 16 21 21 C 1.43788 * 107.10786 * 358.29179 * 20 19 17 22 22 O 1.44395 * 106.16784 * 25.08223 * 21 20 19 23 23 C 1.39159 * 120.19249 * 359.77740 * 14 13 12 24 24 C 1.37594 * 120.09449 * 359.97438 * 23 14 13 25 25 H 0.97000 * 119.99568 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.04625 * 0.02562 * 12 11 9 27 27 H 1.07999 * 119.95083 * 180.22848 * 13 12 11 28 28 H 1.09003 * 109.46711 * 300.00128 * 16 15 14 29 29 H 1.08990 * 109.47082 * 60.00759 * 16 15 14 30 30 H 1.08999 * 110.31610 * 338.75092 * 19 17 16 31 31 H 1.08993 * 110.32151 * 100.84518 * 19 17 16 32 32 H 1.08991 * 110.11701 * 144.25996 * 21 20 19 33 33 H 1.09003 * 110.11039 * 265.91543 * 21 20 19 34 34 H 1.07997 * 119.95809 * 179.97438 * 23 14 13 35 35 H 1.07993 * 120.05223 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6176 0.0000 4 1 2.3817 2.1071 1.3947 5 1 3.5857 1.4120 -0.5922 6 1 1.4935 2.6200 -0.8026 7 6 2.0070 -1.2155 -0.0005 8 1 3.0810 -1.2190 0.1142 9 6 1.3063 -2.4384 -0.1515 10 8 0.1172 -2.4304 -0.4164 11 6 2.0171 -3.7212 0.0120 12 6 3.3843 -3.7328 0.3104 13 6 4.0424 -4.9311 0.4664 14 6 3.3524 -6.1304 0.3181 15 8 4.0060 -7.3097 0.4681 16 6 5.3995 -7.2443 0.7778 17 6 5.9602 -8.6620 0.9074 18 1 5.3568 -9.2526 1.5967 19 6 7.4352 -8.6269 1.3644 20 8 8.0880 -9.6580 0.6022 21 6 7.0808 -10.2859 -0.2095 22 8 6.0386 -9.3027 -0.3891 23 6 1.9940 -6.1236 0.0162 24 6 1.3271 -4.9298 -0.1365 25 1 -0.4849 0.8401 0.0004 26 1 3.9214 -2.8024 0.4220 27 1 5.0967 -4.9409 0.7004 28 1 5.9245 -6.7177 -0.0192 29 1 5.5380 -6.7112 1.7183 30 1 7.8769 -7.6553 1.1430 31 1 7.5061 -8.8400 2.4309 32 1 7.5000 -10.5685 -1.1751 33 1 6.6836 -11.1644 0.2990 34 1 1.4623 -7.0566 -0.0985 35 1 0.2728 -4.9253 -0.3704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:14 Heat of formation + Delta-G solvation = -141.340049 kcal Electronic energy + Delta-G solvation = -20460.141714 eV Core-core repulsion = 17002.842651 eV Total energy + Delta-G solvation = -3457.299063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77461 -39.60378 -37.56207 -35.78355 -35.29448 -32.72197 -32.12463 -30.55491 -29.40826 -27.08492 -26.24761 -25.09435 -22.76571 -22.56971 -21.38701 -19.62842 -18.20174 -17.35732 -17.11720 -16.66533 -16.58639 -15.74269 -15.58406 -15.08389 -14.95586 -14.28289 -13.97750 -13.81286 -13.42198 -13.02380 -12.99331 -12.73731 -12.50996 -12.26932 -12.00455 -11.76842 -11.53835 -11.29051 -11.11365 -10.72343 -10.58561 -10.47008 -10.33767 -10.13265 -9.98427 -8.99404 -8.45596 -7.51736 -7.49254 -6.37365 -4.91507 1.81390 1.97633 3.02354 3.05116 3.07819 3.11090 3.15036 3.64071 3.98154 4.00119 4.23886 4.35732 4.50097 4.62141 4.68011 4.87191 4.97191 5.07396 5.11903 5.29250 5.34411 5.42116 5.52823 5.78047 5.86853 6.02407 6.11428 6.26123 6.48446 6.60567 6.79624 7.01966 7.21998 7.29774 7.35085 7.77733 8.01054 8.76815 8.81586 10.28308 10.49714 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.034553 B = 0.003159 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.164575 B = 8861.981659 C = 9521.533047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.082 3.918 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.074 0.926 9 C 0.392 3.608 10 O -0.545 6.545 11 C -0.136 4.136 12 C -0.056 4.056 13 C -0.221 4.221 14 C 0.111 3.889 15 O -0.313 6.313 16 C 0.068 3.932 17 C 0.048 3.952 18 H 0.097 0.903 19 C 0.031 3.969 20 O -0.389 6.389 21 C 0.200 3.800 22 O -0.365 6.365 23 C -0.161 4.161 24 C -0.056 4.056 25 H 0.275 0.725 26 H 0.132 0.868 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.122 0.878 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.036 -14.397 3.510 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.092 0.908 9 C 0.288 3.712 10 O -0.436 6.436 11 C -0.137 4.137 12 C -0.074 4.074 13 C -0.240 4.240 14 C 0.066 3.934 15 O -0.227 6.227 16 C -0.008 4.008 17 C -0.010 4.010 18 H 0.114 0.886 19 C -0.046 4.046 20 O -0.310 6.310 21 C 0.086 3.914 22 O -0.285 6.285 23 C -0.179 4.179 24 C -0.074 4.074 25 H 0.086 0.914 26 H 0.150 0.850 27 H 0.136 0.864 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.140 0.860 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.305 -14.554 3.169 19.972 hybrid contribution 0.702 0.818 0.242 1.104 sum 14.007 -13.736 3.411 19.912 Atomic orbital electron populations 1.69917 1.07638 1.28265 1.30757 1.25993 0.94607 1.01029 0.92559 0.86370 0.80647 0.81031 0.78979 1.19500 1.18424 1.20050 1.20911 0.95483 0.91842 1.46890 0.90779 1.18056 0.87952 0.85808 0.79380 1.90495 1.16912 1.88590 1.47575 1.21833 0.94259 0.97885 0.99734 1.21353 0.94237 0.96970 0.94853 1.21115 0.99770 0.92480 1.10639 1.19088 0.92065 0.83692 0.98529 1.85956 1.21632 1.29018 1.86108 1.22650 0.81697 0.94605 1.01819 1.23861 0.96288 0.94741 0.86092 0.88557 1.23898 0.90585 0.93135 0.96976 1.88883 1.33525 1.50432 1.58149 1.24843 0.79848 0.90419 0.96275 1.89580 1.55988 1.52015 1.30879 1.20292 0.91373 0.98776 1.07480 1.21239 1.00257 0.90654 0.95231 0.91389 0.84976 0.86369 0.90739 0.90098 0.89264 0.89017 0.86882 0.91648 0.85976 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.13 11.83 55.57 0.66 -20.47 16 2 C 0.08 2.18 5.48 -17.31 -0.09 2.08 16 3 Si 0.91 19.05 29.57 -169.99 -5.03 14.02 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.52 -14.18 8.83 -37.45 -0.33 -14.51 16 8 H 0.07 1.82 6.07 -52.48 -0.32 1.50 16 9 C 0.39 11.09 6.88 -34.44 -0.24 10.86 16 10 O -0.55 -17.36 14.99 5.08 0.08 -17.29 16 11 C -0.14 -3.19 5.89 -104.81 -0.62 -3.81 16 12 C -0.06 -1.12 9.43 -39.18 -0.37 -1.49 16 13 C -0.22 -3.74 9.01 -39.47 -0.36 -4.10 16 14 C 0.11 1.91 6.70 -38.90 -0.26 1.65 16 15 O -0.31 -4.76 10.12 -18.68 -0.19 -4.94 16 16 C 0.07 0.75 4.36 37.16 0.16 0.91 16 17 C 0.05 0.45 3.71 -25.96 -0.10 0.36 16 18 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 19 C 0.03 0.23 7.66 37.92 0.29 0.53 16 20 O -0.39 -3.75 11.59 -59.28 -0.69 -4.43 16 21 C 0.20 1.71 8.57 101.05 0.87 2.57 16 22 O -0.36 -4.25 11.55 -59.71 -0.69 -4.94 16 23 C -0.16 -2.95 9.97 -39.47 -0.39 -3.34 16 24 C -0.06 -1.18 9.59 -39.17 -0.38 -1.56 16 25 H 0.28 7.04 8.29 -40.82 -0.34 6.70 16 26 H 0.13 2.51 6.22 -52.49 -0.33 2.19 16 27 H 0.12 1.58 6.28 -52.49 -0.33 1.25 16 28 H 0.07 0.82 7.65 -51.93 -0.40 0.42 16 29 H 0.08 0.72 7.65 -51.93 -0.40 0.32 16 30 H 0.09 0.60 7.85 -51.93 -0.41 0.19 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.13 2.86 7.65 -52.49 -0.40 2.46 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -34.27 305.31 -6.90 -41.17 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.83 Total: 2.13 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.81 Total: -9.85 kcal Atomic # 7 Polarization: -21.13 SS G_CDS: 0.66 Total: -20.47 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.49 Total: -31.60 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.27 -6.90 -41.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.171 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds