Wall clock time and date at job start Tue Mar 31 2020 00:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30532 * 1 3 3 Si 1.86797 * 120.00377 * 2 1 4 4 H 1.48493 * 109.47098 * 85.01944 * 3 2 1 5 5 H 1.48503 * 109.47606 * 205.02112 * 3 2 1 6 6 H 1.48504 * 109.47063 * 325.02143 * 3 2 1 7 7 C 1.40348 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99736 * 187.04743 * 7 2 1 9 9 C 1.41757 * 120.00279 * 7.03869 * 7 2 1 10 10 O 1.21825 * 119.99754 * 7.46943 * 9 7 2 11 11 C 1.47563 * 120.00301 * 187.46519 * 9 7 2 12 12 C 1.39945 * 120.09531 * 359.72211 * 11 9 7 13 13 C 1.37600 * 119.90620 * 179.78813 * 12 11 9 14 14 C 1.39156 * 120.09169 * 0.47437 * 13 12 11 15 15 O 1.35661 * 119.90260 * 179.76711 * 14 13 12 16 16 C 1.42903 * 117.00077 * 0.02562 * 15 14 13 17 17 C 1.53003 * 109.46805 * 180.02562 * 16 15 14 18 18 H 1.08998 * 110.65191 * 308.15813 * 17 16 15 19 19 C 1.54458 * 110.72538 * 185.00164 * 17 16 15 20 20 O 1.43887 * 105.08240 * 219.85020 * 19 17 16 21 21 C 1.43788 * 107.10786 * 358.29179 * 20 19 17 22 22 O 1.44395 * 106.16784 * 25.08223 * 21 20 19 23 23 C 1.39159 * 120.19249 * 359.77740 * 14 13 12 24 24 C 1.37594 * 120.09449 * 359.97438 * 23 14 13 25 25 H 0.97000 * 119.99568 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.04625 * 0.02562 * 12 11 9 27 27 H 1.07999 * 119.95083 * 180.22848 * 13 12 11 28 28 H 1.09003 * 109.46711 * 300.00128 * 16 15 14 29 29 H 1.08990 * 109.47082 * 60.00759 * 16 15 14 30 30 H 1.08999 * 110.31610 * 338.75092 * 19 17 16 31 31 H 1.08993 * 110.32151 * 100.84518 * 19 17 16 32 32 H 1.08991 * 110.11701 * 144.25996 * 21 20 19 33 33 H 1.09003 * 110.11039 * 265.91543 * 21 20 19 34 34 H 1.07997 * 119.95809 * 179.97438 * 23 14 13 35 35 H 1.07993 * 120.05223 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6176 0.0000 4 1 2.3817 2.1071 1.3947 5 1 3.5857 1.4120 -0.5922 6 1 1.4935 2.6200 -0.8026 7 6 2.0070 -1.2155 -0.0005 8 1 3.0810 -1.2190 0.1142 9 6 1.3063 -2.4384 -0.1515 10 8 0.1172 -2.4304 -0.4164 11 6 2.0171 -3.7212 0.0120 12 6 3.3843 -3.7328 0.3104 13 6 4.0424 -4.9311 0.4664 14 6 3.3524 -6.1304 0.3181 15 8 4.0060 -7.3097 0.4681 16 6 5.3995 -7.2443 0.7778 17 6 5.9602 -8.6620 0.9074 18 1 5.3568 -9.2526 1.5967 19 6 7.4352 -8.6269 1.3644 20 8 8.0880 -9.6580 0.6022 21 6 7.0808 -10.2859 -0.2095 22 8 6.0386 -9.3027 -0.3891 23 6 1.9940 -6.1236 0.0162 24 6 1.3271 -4.9298 -0.1365 25 1 -0.4849 0.8401 0.0004 26 1 3.9214 -2.8024 0.4220 27 1 5.0967 -4.9409 0.7004 28 1 5.9245 -6.7177 -0.0192 29 1 5.5380 -6.7112 1.7183 30 1 7.8769 -7.6553 1.1430 31 1 7.5061 -8.8400 2.4309 32 1 7.5000 -10.5685 -1.1751 33 1 6.6836 -11.1644 0.2990 34 1 1.4623 -7.0566 -0.0985 35 1 0.2728 -4.9253 -0.3704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:12 Heat of formation + Delta-G solvation = -165.543822 kcal Electronic energy + Delta-G solvation = -20461.191268 eV Core-core repulsion = 17002.842651 eV Total energy + Delta-G solvation = -3458.348617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55444 -40.86062 -39.23813 -37.51259 -36.06004 -34.79545 -33.01584 -32.00581 -31.00912 -28.73986 -27.35205 -25.78477 -24.22035 -23.85202 -22.54624 -21.37132 -19.36019 -18.62020 -18.22601 -17.87587 -17.45366 -17.32496 -16.65719 -16.22065 -15.97673 -15.81699 -15.44237 -14.97398 -14.61166 -14.42915 -14.34479 -14.31587 -13.69324 -13.46497 -13.25721 -13.11408 -13.06170 -12.74724 -12.59068 -12.41856 -12.05085 -11.83880 -11.65040 -11.30183 -10.98488 -10.73595 -9.95861 -9.61182 -9.06592 -8.38913 -7.05805 0.21272 0.46685 1.37983 1.39844 1.56944 2.00053 2.18904 2.22609 2.44808 2.84837 3.02568 3.53765 3.61408 3.73688 3.84393 3.89500 3.99366 4.09971 4.24941 4.26802 4.30418 4.44552 4.49020 4.52932 4.58133 4.71548 4.78973 4.92245 5.09023 5.19550 5.30343 5.44028 5.73810 5.78704 5.86129 5.97623 6.42789 6.69813 6.80359 8.24542 8.48255 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.034553 B = 0.003159 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.164575 B = 8861.981659 C = 9521.533047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.023 3.977 3 Si 0.997 3.003 4 H -0.256 1.256 5 H -0.244 1.244 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.367 3.633 10 O -0.604 6.604 11 C -0.181 4.181 12 C -0.053 4.053 13 C -0.208 4.208 14 C 0.130 3.870 15 O -0.319 6.319 16 C 0.056 3.944 17 C 0.046 3.954 18 H 0.106 0.894 19 C 0.032 3.968 20 O -0.406 6.406 21 C 0.196 3.804 22 O -0.397 6.397 23 C -0.163 4.163 24 C -0.067 4.067 25 H 0.283 0.717 26 H 0.140 0.860 27 H 0.164 0.836 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.651 -14.844 4.540 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.196 4.196 3 Si 0.815 3.185 4 H -0.180 1.180 5 H -0.167 1.167 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.116 0.884 9 C 0.267 3.733 10 O -0.499 6.499 11 C -0.182 4.182 12 C -0.071 4.071 13 C -0.226 4.226 14 C 0.084 3.916 15 O -0.233 6.233 16 C -0.019 4.019 17 C -0.011 4.011 18 H 0.123 0.877 19 C -0.044 4.044 20 O -0.328 6.328 21 C 0.083 3.917 22 O -0.317 6.317 23 C -0.181 4.181 24 C -0.086 4.086 25 H 0.093 0.907 26 H 0.158 0.842 27 H 0.181 0.819 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.101 0.899 34 H 0.161 0.839 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.957 -15.035 4.211 23.051 hybrid contribution -0.332 0.749 -0.058 0.821 sum 16.625 -14.286 4.154 22.310 Atomic orbital electron populations 1.70067 1.10166 1.30041 1.31754 1.27315 0.95468 1.05758 0.91028 0.85018 0.79212 0.74563 0.79703 1.17987 1.16730 1.19580 1.21443 0.96805 0.92356 1.46971 0.88402 1.18810 0.87656 0.88466 0.78339 1.90432 1.19188 1.89892 1.50402 1.21484 0.96105 0.96338 1.04258 1.21407 0.92640 0.98740 0.94322 1.21438 1.01643 0.90829 1.08695 1.19125 0.91681 0.84754 0.96022 1.85970 1.24062 1.27729 1.85509 1.23082 0.79113 0.96339 1.03370 1.23976 0.97618 0.93827 0.85666 0.87656 1.24052 0.88977 0.93299 0.98072 1.88863 1.34240 1.51092 1.58585 1.25073 0.79285 0.90215 0.97159 1.89549 1.56969 1.53046 1.32178 1.20401 0.92434 0.98238 1.07042 1.21113 0.99628 0.91499 0.96319 0.90663 0.84198 0.81893 0.90365 0.87134 0.88285 0.86516 0.85839 0.89935 0.83922 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.26 11.83 21.89 0.26 -47.00 16 2 C 0.02 1.25 5.48 85.40 0.47 1.72 16 3 Si 1.00 38.89 29.57 68.60 2.03 40.92 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.24 -8.81 7.11 99.48 0.71 -8.11 16 6 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.55 -30.46 8.83 23.65 0.21 -30.25 16 8 H 0.10 4.77 6.07 -2.91 -0.02 4.76 16 9 C 0.37 21.90 6.88 25.60 0.18 22.07 16 10 O -0.60 -41.27 14.99 -4.75 -0.07 -41.34 16 11 C -0.18 -8.79 5.89 -19.99 -0.12 -8.91 16 12 C -0.05 -2.06 9.43 22.53 0.21 -1.84 16 13 C -0.21 -6.36 9.01 22.34 0.20 -6.16 16 14 C 0.13 4.15 6.70 22.71 0.15 4.30 16 15 O -0.32 -8.62 10.12 -89.77 -0.91 -9.52 16 16 C 0.06 1.00 4.36 71.98 0.31 1.31 16 17 C 0.05 0.72 3.71 31.09 0.12 0.84 16 18 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 19 C 0.03 0.37 7.66 72.48 0.56 0.93 16 20 O -0.41 -6.69 11.59 -125.98 -1.46 -8.15 16 21 C 0.20 2.89 8.57 113.37 0.97 3.86 16 22 O -0.40 -8.30 11.55 -125.57 -1.45 -9.75 16 23 C -0.16 -5.88 9.97 22.34 0.22 -5.65 16 24 C -0.07 -2.99 9.59 22.53 0.22 -2.77 16 25 H 0.28 15.04 8.29 -92.71 -0.77 14.27 16 26 H 0.14 5.10 6.22 -2.91 -0.02 5.08 16 27 H 0.16 3.49 6.28 -2.91 -0.02 3.47 16 28 H 0.08 1.39 7.65 -2.39 -0.02 1.37 16 29 H 0.11 1.37 7.65 -2.39 -0.02 1.35 16 30 H 0.10 0.93 7.85 -2.39 -0.02 0.91 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 35 H 0.11 5.29 7.65 -2.91 -0.02 5.27 16 Total: -1.00 -79.53 305.31 3.21 -76.31 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.12 Total: 19.09 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.70 Total: -20.56 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.26 Total: -47.00 kcal Atomic # 8 Polarization: -64.88 SS G_CDS: -3.89 Total: -68.77 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -79.53 3.21 -76.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.229 kcal (2) G-P(sol) polarization free energy of solvation -79.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds