Wall clock time and date at job start Mon Mar 30 2020 23:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 117.00103 * 2 1 4 4 O 1.20831 * 119.99816 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00337 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.88461 * 327.70325 * 5 3 2 7 7 C 1.54906 * 111.00813 * 203.81615 * 5 3 2 8 8 N 1.47423 * 104.83198 * 204.87821 * 7 5 3 9 9 S 1.65598 * 125.64919 * 204.09390 * 8 7 5 10 10 O 1.42105 * 106.40243 * 336.46144 * 9 8 7 11 11 O 1.42099 * 106.40310 * 203.54493 * 9 8 7 12 12 C 1.76203 * 107.22008 * 89.99874 * 9 8 7 13 13 H 1.07995 * 119.99794 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99980 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00248 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99923 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47121 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46794 * 120.00157 * 16 14 12 19 19 H 1.48498 * 109.47253 * 240.00406 * 16 14 12 20 20 C 1.47022 * 108.70199 * 24.35724 * 8 7 5 21 21 C 1.54328 * 107.26822 * 358.58513 * 20 8 7 22 22 H 1.08995 * 110.84954 * 219.67372 * 21 20 8 23 23 N 1.46904 * 110.67058 * 96.51908 * 21 20 8 24 24 H 1.09004 * 109.47415 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47134 * 299.99787 * 1 2 3 26 26 H 1.08995 * 109.47020 * 59.99825 * 1 2 3 27 27 H 1.09003 * 110.36315 * 86.04293 * 7 5 3 28 28 H 1.09000 * 110.46143 * 323.76676 * 7 5 3 29 29 H 0.96998 * 120.00010 * 179.97438 * 15 14 12 30 30 H 1.09005 * 109.87995 * 118.13426 * 20 8 7 31 31 H 1.08999 * 109.88530 * 239.29047 * 20 8 7 32 32 H 1.00900 * 110.99789 * 59.81802 * 23 21 20 33 33 H 1.00892 * 111.00058 * 183.77582 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9992 0.4357 0.5450 7 6 4.0514 2.6252 0.5844 8 7 5.3846 2.8356 -0.0084 9 16 6.5910 3.7693 0.6358 10 8 5.9563 4.7136 1.4872 11 8 7.4320 4.1417 -0.4473 12 6 7.5557 2.7279 1.6797 13 1 7.2969 1.6853 1.7900 14 6 8.6415 3.2440 2.3548 15 7 8.9569 4.5136 2.2200 16 14 9.6645 2.1398 3.4609 17 1 9.1056 0.7641 3.4406 18 1 11.0664 2.1113 2.9717 19 1 9.6353 2.6660 4.8492 20 6 5.4636 2.0841 -1.2696 21 6 4.1210 1.3441 -1.4469 22 1 4.2797 0.3429 -1.8473 23 7 3.2165 2.1113 -2.3138 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.1244 2.5646 1.6703 28 1 3.3760 3.4302 0.2947 29 1 9.7205 4.8767 2.6953 30 1 5.6233 2.7708 -2.1010 31 1 6.2790 1.3623 -1.2207 32 1 3.6228 2.2508 -3.2268 33 1 2.3156 1.6626 -2.3836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239136547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:54 Heat of formation + Delta-G solvation = -165.273331 kcal Electronic energy + Delta-G solvation = -20552.782389 eV Core-core repulsion = 17126.349110 eV Total energy + Delta-G solvation = -3426.433280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70932 -38.26666 -36.31618 -35.21658 -33.93972 -33.23973 -32.96475 -30.40376 -27.73332 -27.42160 -26.12118 -23.35044 -21.39733 -19.91684 -18.77816 -17.88920 -17.55032 -16.63653 -16.39711 -16.33459 -15.40977 -15.39768 -14.83545 -14.16877 -14.06177 -13.64447 -13.53526 -13.10973 -12.95556 -12.70185 -12.22634 -11.98951 -11.61203 -11.43967 -11.24412 -11.23272 -11.01805 -10.88401 -10.58729 -10.42855 -10.34738 -10.26915 -10.17397 -9.25722 -8.91609 -8.74598 -8.15895 -6.69288 -5.31959 2.15541 2.20044 2.66404 3.05694 3.13960 3.20797 4.05924 4.27414 4.38279 4.48401 4.64946 4.84908 4.94515 4.96845 5.02075 5.19583 5.34264 5.41923 5.54731 5.80976 5.93588 5.99515 6.12594 6.24171 6.33155 6.44698 6.82482 7.02781 7.30527 7.33429 7.44247 7.76635 7.98153 8.89079 10.24268 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.005443 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.163091 B = 5142.709096 C = 5521.707168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.484 6.484 5 C -0.094 4.094 6 H 0.119 0.881 7 C 0.150 3.850 8 N -1.016 6.016 9 S 2.728 3.272 10 O -0.998 6.998 11 O -0.999 6.999 12 C -1.020 5.020 13 H 0.103 0.897 14 C 0.132 3.868 15 N -0.845 5.845 16 Si 0.922 3.078 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.135 3.865 21 C 0.095 3.905 22 H 0.064 0.936 23 N -0.835 5.835 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.291 0.709 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.349 0.651 33 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.921 -11.862 -5.806 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.313 3.687 4 O -0.369 6.369 5 C -0.116 4.116 6 H 0.137 0.863 7 C 0.024 3.976 8 N -0.851 5.851 9 S 2.830 3.170 10 O -0.988 6.988 11 O -0.990 6.990 12 C -1.154 5.154 13 H 0.121 0.879 14 C -0.086 4.086 15 N -0.475 5.475 16 Si 0.745 3.255 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.196 1.196 20 C 0.008 3.992 21 C -0.018 4.018 22 H 0.082 0.918 23 N -0.368 5.368 24 H 0.117 0.883 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.164 0.836 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.781 -9.816 -5.400 16.257 hybrid contribution 0.441 -1.980 0.283 2.049 sum -11.340 -11.796 -5.116 17.144 Atomic orbital electron populations 1.23235 0.76640 1.03413 1.02607 1.86534 1.23211 1.33883 1.84514 1.23354 0.91428 0.81264 0.72695 1.90686 1.66662 1.36057 1.43529 1.22400 0.87315 1.02625 0.99226 0.86258 1.21602 0.84830 0.93590 0.97568 1.59149 1.26700 1.67541 1.31676 1.00204 0.70824 0.72749 0.73241 1.93370 1.76932 1.60707 1.67826 1.93356 1.65881 1.82458 1.57292 1.30656 1.27266 1.11644 1.45823 0.87860 1.24767 0.95105 0.94964 0.93747 1.69905 1.26674 1.12784 1.38140 0.86120 0.79252 0.80613 0.79474 1.18621 1.19610 1.19595 1.21555 0.94711 0.94969 0.87959 1.22338 0.93066 0.95586 0.90820 0.91843 1.58591 1.05756 1.54681 1.17782 0.88350 0.91860 0.91963 0.90354 0.89788 0.89894 0.90809 0.90993 0.83634 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.13 10.57 -39.24 -0.41 -4.55 16 3 C 0.47 6.41 5.70 36.01 0.21 6.62 16 4 O -0.48 -7.82 15.35 -18.75 -0.29 -8.11 16 5 C -0.09 -1.31 3.47 -89.62 -0.31 -1.63 16 6 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 7 C 0.15 2.75 6.29 -2.53 -0.02 2.73 16 8 N -1.02 -21.00 3.70 -111.42 -0.41 -21.41 16 9 S 2.73 73.63 5.22 -107.50 -0.56 73.07 16 10 O -1.00 -29.90 17.60 -57.17 -1.01 -30.91 16 11 O -1.00 -29.40 17.60 -57.17 -1.01 -30.40 16 12 C -1.02 -27.99 9.75 30.60 0.30 -27.69 16 13 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 14 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 15 N -0.85 -24.94 13.19 55.43 0.73 -24.21 16 16 Si 0.92 20.44 29.54 -169.99 -5.02 15.42 16 17 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 C 0.13 2.21 6.72 -3.06 -0.02 2.19 16 21 C 0.09 1.20 3.90 -65.87 -0.26 0.95 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 N -0.84 -10.05 8.79 -3.11 -0.03 -10.08 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 26 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.08 1.64 7.22 -51.93 -0.37 1.27 16 29 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.35 3.46 9.00 -39.29 -0.35 3.11 16 33 H 0.34 3.64 7.80 -39.30 -0.31 3.33 16 LS Contribution 299.84 15.07 4.52 4.52 Total: -1.00 -36.81 299.84 -6.57 -43.38 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.95 Total: 5.17 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 0.87 Total: -11.89 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.29 Total: -55.70 kcal Atomic # 8 Polarization: -71.26 SS G_CDS: -2.71 Total: -73.97 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 73.63 SS G_CDS: -0.56 Total: 73.07 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.81 -6.57 -43.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239136547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.894 kcal (2) G-P(sol) polarization free energy of solvation -36.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds