Wall clock time and date at job start Mon Mar 30 2020 23:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 117.00103 * 2 1 4 4 O 1.20831 * 119.99816 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00337 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.88461 * 327.70325 * 5 3 2 7 7 C 1.54906 * 111.00813 * 203.81615 * 5 3 2 8 8 N 1.47423 * 104.83198 * 204.87821 * 7 5 3 9 9 S 1.65598 * 125.64919 * 204.09390 * 8 7 5 10 10 O 1.42105 * 106.40243 * 336.46144 * 9 8 7 11 11 O 1.42099 * 106.40310 * 203.54493 * 9 8 7 12 12 C 1.76203 * 107.22008 * 89.99874 * 9 8 7 13 13 H 1.07995 * 119.99794 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99980 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00248 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99923 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47121 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46794 * 120.00157 * 16 14 12 19 19 H 1.48498 * 109.47253 * 240.00406 * 16 14 12 20 20 C 1.47022 * 108.70199 * 24.35724 * 8 7 5 21 21 C 1.54328 * 107.26822 * 358.58513 * 20 8 7 22 22 H 1.08995 * 110.84954 * 219.67372 * 21 20 8 23 23 N 1.46904 * 110.67058 * 96.51908 * 21 20 8 24 24 H 1.09004 * 109.47415 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47134 * 299.99787 * 1 2 3 26 26 H 1.08995 * 109.47020 * 59.99825 * 1 2 3 27 27 H 1.09003 * 110.36315 * 86.04293 * 7 5 3 28 28 H 1.09000 * 110.46143 * 323.76676 * 7 5 3 29 29 H 0.96998 * 120.00010 * 179.97438 * 15 14 12 30 30 H 1.09005 * 109.87995 * 118.13426 * 20 8 7 31 31 H 1.08999 * 109.88530 * 239.29047 * 20 8 7 32 32 H 1.00900 * 110.99789 * 59.81802 * 23 21 20 33 33 H 1.00892 * 111.00058 * 183.77582 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9992 0.4357 0.5450 7 6 4.0514 2.6252 0.5844 8 7 5.3846 2.8356 -0.0084 9 16 6.5910 3.7693 0.6358 10 8 5.9563 4.7136 1.4872 11 8 7.4320 4.1417 -0.4473 12 6 7.5557 2.7279 1.6797 13 1 7.2969 1.6853 1.7900 14 6 8.6415 3.2440 2.3548 15 7 8.9569 4.5136 2.2200 16 14 9.6645 2.1398 3.4609 17 1 9.1056 0.7641 3.4406 18 1 11.0664 2.1113 2.9717 19 1 9.6353 2.6660 4.8492 20 6 5.4636 2.0841 -1.2696 21 6 4.1210 1.3441 -1.4469 22 1 4.2797 0.3429 -1.8473 23 7 3.2165 2.1113 -2.3138 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.1244 2.5646 1.6703 28 1 3.3760 3.4302 0.2947 29 1 9.7205 4.8767 2.6953 30 1 5.6233 2.7708 -2.1010 31 1 6.2790 1.3623 -1.2207 32 1 3.6228 2.2508 -3.2268 33 1 2.3156 1.6626 -2.3836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239136547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:52 Heat of formation + Delta-G solvation = -197.416324 kcal Electronic energy + Delta-G solvation = -20554.176214 eV Core-core repulsion = 17126.349110 eV Total energy + Delta-G solvation = -3427.827105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76648 -39.45409 -37.45911 -37.34453 -36.17119 -35.20171 -34.32704 -31.59975 -28.76445 -28.45962 -28.25001 -24.61747 -22.61893 -20.99579 -20.76895 -19.44395 -18.76111 -18.38004 -17.64213 -17.41919 -17.15301 -16.52733 -16.27325 -15.95743 -15.83224 -14.84910 -14.78240 -14.48802 -14.15716 -14.02331 -13.92232 -13.30545 -13.07278 -13.01373 -12.82505 -12.69145 -12.54431 -12.43211 -12.36284 -12.25430 -12.12363 -11.74663 -11.44494 -11.26165 -10.98284 -9.81524 -9.65213 -8.74176 -7.49346 0.20865 1.12635 1.35553 1.36017 1.54540 1.69303 2.22311 2.58055 2.84864 3.25348 3.35343 3.50003 3.77323 3.93943 4.13057 4.26703 4.37312 4.38755 4.39013 4.47134 4.55176 4.75069 4.78841 4.83926 4.98053 5.14682 5.34345 5.35498 5.72546 5.92130 6.13520 6.51414 6.76392 6.77728 8.21581 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.005443 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.163091 B = 5142.709096 C = 5521.707168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.481 3.519 4 O -0.517 6.517 5 C -0.088 4.088 6 H 0.147 0.853 7 C 0.142 3.858 8 N -1.016 6.016 9 S 2.731 3.269 10 O -1.043 7.043 11 O -1.036 7.036 12 C -1.035 5.035 13 H 0.126 0.874 14 C 0.067 3.933 15 N -0.897 5.897 16 Si 0.996 3.004 17 H -0.242 1.242 18 H -0.259 1.259 19 H -0.262 1.262 20 C 0.120 3.880 21 C 0.109 3.891 22 H 0.110 0.890 23 N -0.852 5.852 24 H 0.133 0.867 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.299 0.701 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.361 0.639 33 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 -15.290 -5.785 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.323 3.677 4 O -0.404 6.404 5 C -0.109 4.109 6 H 0.165 0.835 7 C 0.016 3.984 8 N -0.855 5.855 9 S 2.835 3.165 10 O -1.033 7.033 11 O -1.027 7.027 12 C -1.170 5.170 13 H 0.144 0.856 14 C -0.146 4.146 15 N -0.528 5.528 16 Si 0.813 3.187 17 H -0.165 1.165 18 H -0.183 1.183 19 H -0.186 1.186 20 C -0.006 4.006 21 C -0.003 4.003 22 H 0.127 0.873 23 N -0.388 5.388 24 H 0.151 0.849 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.177 0.823 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.203 -13.251 -5.414 18.810 hybrid contribution 0.433 -0.916 0.213 1.035 sum -11.770 -14.167 -5.201 19.138 Atomic orbital electron populations 1.23570 0.74687 1.05715 1.02614 1.86511 1.24986 1.32148 1.83817 1.23158 0.91148 0.81472 0.71911 1.90688 1.67273 1.37295 1.45159 1.22349 0.88014 1.00532 1.00056 0.83527 1.21672 0.83253 0.95991 0.97499 1.58514 1.26295 1.67337 1.33309 0.99646 0.71094 0.73095 0.72707 1.93302 1.77791 1.63199 1.69038 1.93294 1.67541 1.83639 1.58191 1.30960 1.27491 1.12647 1.45855 0.85611 1.26112 0.96531 0.96557 0.95354 1.70009 1.27909 1.15138 1.39765 0.85027 0.77555 0.78938 0.77135 1.16509 1.18324 1.18594 1.21960 0.97921 0.95115 0.85592 1.22296 0.90699 0.96982 0.90371 0.87297 1.58503 1.06336 1.55315 1.18597 0.84889 0.92363 0.91579 0.90963 0.91839 0.89070 0.91579 0.89385 0.82323 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.00 10.57 -51.35 -0.54 -7.54 16 3 C 0.48 12.10 5.70 71.24 0.41 12.50 16 4 O -0.52 -16.28 15.35 21.95 0.34 -15.95 16 5 C -0.09 -2.26 3.47 -10.15 -0.04 -2.30 16 6 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 7 C 0.14 5.19 6.29 86.85 0.55 5.74 16 8 N -1.02 -42.29 3.70 -506.42 -1.87 -44.16 16 9 S 2.73 151.75 5.22 -56.49 -0.29 151.46 16 10 O -1.04 -65.39 17.60 -128.00 -2.25 -67.64 16 11 O -1.04 -63.14 17.60 -128.00 -2.25 -65.39 16 12 C -1.04 -56.81 9.75 67.73 0.66 -56.15 16 13 H 0.13 6.08 7.81 -2.91 -0.02 6.06 16 14 C 0.07 3.72 5.46 84.65 0.46 4.19 16 15 N -0.90 -54.01 13.19 21.45 0.28 -53.73 16 16 Si 1.00 40.75 29.54 68.60 2.03 42.77 16 17 H -0.24 -9.04 7.11 99.48 0.71 -8.34 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 C 0.12 3.78 6.72 86.73 0.58 4.36 16 21 C 0.11 2.47 3.90 46.11 0.18 2.65 16 22 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 23 N -0.85 -18.85 8.79 -163.75 -1.44 -20.29 16 24 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 26 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 27 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.06 2.57 7.22 -2.39 -0.02 2.55 16 29 H 0.30 16.09 8.31 -92.71 -0.77 15.32 16 30 H 0.07 2.17 8.00 -2.38 -0.02 2.15 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.36 6.46 9.00 -89.69 -0.81 5.65 16 33 H 0.35 6.65 7.80 -89.70 -0.70 5.95 16 Total: -1.00 -82.76 299.84 -2.36 -85.12 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.35 Total: 22.78 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 4.00 Total: -27.44 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -3.03 Total: -118.18 kcal Atomic # 8 Polarization: -151.81 SS G_CDS: -4.71 Total: -156.52 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 151.75 SS G_CDS: -0.29 Total: 151.46 kcal Total: -82.76 -2.36 -85.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239136547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.297 kcal (2) G-P(sol) polarization free energy of solvation -82.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds