Wall clock time and date at job start Tue Mar 31 2020 00:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99492 * 2 1 4 4 H 1.48504 * 109.47148 * 269.99961 * 3 2 1 5 5 H 1.48505 * 109.47136 * 30.00085 * 3 2 1 6 6 H 1.48500 * 109.46976 * 150.00162 * 3 2 1 7 7 C 1.37875 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99864 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99958 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46842 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46943 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47058 * 180.02562 * 11 10 9 13 13 C 1.38073 * 119.85168 * 89.99897 * 12 11 10 14 14 C 1.39734 * 120.15293 * 179.97438 * 13 12 11 15 15 C 1.47743 * 120.07588 * 179.97438 * 14 13 12 16 16 O 1.21468 * 120.00440 * 0.02562 * 15 14 13 17 17 O 1.34711 * 120.00226 * 180.02562 * 15 14 13 18 18 C 1.39349 * 119.84997 * 0.25454 * 14 13 12 19 19 C 1.39358 * 119.69762 * 359.51499 * 18 14 13 20 20 C 1.47739 * 120.08002 * 180.23217 * 19 18 14 21 21 O 1.21474 * 119.99763 * 180.23623 * 20 19 18 22 22 O 1.34701 * 120.00075 * 0.22841 * 20 19 18 23 23 C 1.38072 * 119.84454 * 269.97758 * 12 11 10 24 24 H 0.96999 * 120.00251 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47493 * 59.99776 * 9 7 2 26 26 H 1.09006 * 109.46814 * 299.99489 * 9 7 2 27 27 H 1.08998 * 109.46991 * 59.99798 * 10 9 7 28 28 H 1.08993 * 109.47264 * 299.99909 * 10 9 7 29 29 H 1.08997 * 109.47159 * 59.99624 * 11 10 9 30 30 H 1.09006 * 109.46901 * 299.99933 * 11 10 9 31 31 H 1.08005 * 119.92000 * 359.97438 * 13 12 11 32 32 H 0.96700 * 117.00324 * 180.02562 * 17 15 14 33 33 H 1.08005 * 120.15764 * 179.75209 * 18 14 13 34 34 H 0.96700 * 117.00358 * 180.02562 * 22 20 19 35 35 H 1.07999 * 119.92323 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4463 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1938 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5517 -2.6362 -0.0001 12 6 6.0541 -4.0570 -0.0009 13 6 6.2832 -4.7043 -1.1988 14 6 6.7495 -6.0215 -1.2068 15 6 6.9935 -6.7127 -2.4896 16 8 6.7892 -6.1359 -3.5389 17 8 7.4426 -7.9828 -2.4956 18 6 6.9784 -6.6836 -0.0022 19 6 6.7497 -6.0227 1.2032 20 6 6.9944 -6.7149 2.4852 21 8 6.7905 -6.1389 3.5351 22 8 7.4435 -7.9849 2.4900 23 6 6.2836 -4.7053 1.1964 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6806 0.8905 26 1 3.8752 -0.6794 -0.8896 27 1 3.6587 -3.1500 -0.8903 28 1 3.6581 -3.1504 0.8896 29 1 5.9150 -2.1224 0.8898 30 1 5.9149 -2.1223 -0.8901 31 1 6.1014 -4.1913 -2.1317 32 1 7.5878 -8.3930 -3.3591 33 1 7.3350 -7.7031 -0.0027 34 1 7.5885 -8.3961 3.3531 35 1 6.1023 -4.1931 2.1298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250064971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:08 Heat of formation + Delta-G solvation = -176.777375 kcal Electronic energy + Delta-G solvation = -20309.597757 eV Core-core repulsion = 16850.762016 eV Total energy + Delta-G solvation = -3458.835740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.95131 -40.27294 -38.88364 -36.37650 -36.34042 -35.10723 -32.80670 -31.84895 -30.97886 -27.41821 -25.44651 -24.49417 -23.63832 -21.16295 -20.85657 -20.12687 -18.44456 -17.95921 -17.76123 -16.62846 -16.37521 -16.26384 -15.99235 -15.78409 -15.56136 -14.39409 -13.97125 -13.87969 -13.54594 -13.44216 -13.16710 -12.63960 -12.10601 -12.07340 -11.93061 -11.88441 -11.75766 -11.59511 -11.12318 -10.99027 -10.83111 -10.72977 -9.96192 -9.82571 -9.74636 -9.45109 -9.21676 -8.90271 -8.53455 -6.03688 -4.01989 0.24745 0.60260 2.02189 2.48905 2.63385 2.71956 3.31176 3.38696 3.41636 3.47780 4.34501 4.45532 4.58065 4.67036 4.94030 4.98273 5.03311 5.24002 5.30360 5.53386 5.58911 5.78063 5.80449 5.97666 6.08571 6.11490 6.15694 6.21237 6.44341 6.55303 6.60197 6.86358 7.28153 7.40821 7.58942 7.59612 7.79418 8.54234 9.01383 9.58617 11.09871 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.003915 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.424198 B = 7149.376947 C = 8325.494216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.099 4.099 11 C -0.088 4.088 12 C -0.085 4.085 13 C -0.016 4.016 14 C -0.141 4.141 15 C 0.530 3.470 16 O -0.508 6.508 17 O -0.512 6.512 18 C -0.015 4.015 19 C -0.141 4.141 20 C 0.530 3.470 21 O -0.508 6.508 22 O -0.512 6.512 23 C -0.016 4.016 24 H 0.263 0.737 25 H 0.017 0.983 26 H 0.012 0.988 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.415 0.585 33 H 0.152 0.848 34 H 0.415 0.585 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.918 -16.715 0.019 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.136 4.136 11 C -0.125 4.125 12 C -0.085 4.085 13 C -0.034 4.034 14 C -0.142 4.142 15 C 0.375 3.625 16 O -0.397 6.397 17 O -0.324 6.324 18 C -0.033 4.033 19 C -0.142 4.142 20 C 0.375 3.625 21 O -0.397 6.397 22 O -0.324 6.324 23 C -0.034 4.034 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.274 0.726 33 H 0.169 0.831 34 H 0.274 0.726 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 18.519 -15.922 0.022 24.422 hybrid contribution 0.452 0.288 -0.022 0.536 sum 18.971 -15.634 0.001 24.582 Atomic orbital electron populations 1.69917 1.06338 1.26881 1.51184 1.25043 0.94728 0.99201 0.94570 0.86770 0.80356 0.83606 0.78487 1.20301 1.21427 1.18974 1.21148 0.89542 0.94469 1.50781 0.91076 1.19597 0.97191 0.92057 0.96360 1.21511 0.90243 1.00249 1.01628 1.20901 0.98576 0.89586 1.03454 1.20080 0.98652 0.98359 0.91441 1.21543 0.90498 0.91826 0.99560 1.18934 1.09451 0.95337 0.90509 1.20749 0.73049 0.79486 0.89258 1.90924 1.48449 1.66597 1.33753 1.84546 1.78681 1.28289 1.40915 1.21673 0.91890 0.99813 0.89974 1.18940 1.09450 0.95333 0.90514 1.20747 0.73049 0.79490 0.89256 1.90925 1.48462 1.66639 1.33701 1.84543 1.78678 1.28266 1.40936 1.21547 0.90494 0.91814 0.99570 0.92748 0.96499 0.96927 0.92473 0.92441 0.90508 0.90519 0.83468 0.72568 0.83071 0.72567 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -1.84 5.14 -26.73 -0.14 -1.98 16 11 C -0.09 -1.26 5.33 -27.89 -0.15 -1.40 16 12 C -0.09 -1.08 5.12 -104.75 -0.54 -1.62 16 13 C -0.02 -0.20 9.23 -39.08 -0.36 -0.56 16 14 C -0.14 -1.58 5.87 -105.04 -0.62 -2.20 16 15 C 0.53 5.79 8.27 34.62 0.29 6.08 16 16 O -0.51 -7.05 17.12 -19.24 -0.33 -7.38 16 17 O -0.51 -3.81 12.67 -40.52 -0.51 -4.33 16 18 C -0.02 -0.15 9.18 -38.75 -0.36 -0.51 16 19 C -0.14 -1.58 5.87 -105.03 -0.62 -2.20 16 20 C 0.53 5.79 8.27 34.61 0.29 6.08 16 21 O -0.51 -7.05 17.12 -19.25 -0.33 -7.38 16 22 O -0.51 -3.81 12.67 -40.49 -0.51 -4.33 16 23 C -0.02 -0.20 9.24 -39.08 -0.36 -0.56 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.15 1.79 7.64 -52.48 -0.40 1.39 16 32 H 0.42 1.23 9.11 45.56 0.42 1.64 16 33 H 0.15 1.27 7.15 -52.48 -0.38 0.89 16 34 H 0.42 1.23 9.11 45.56 0.42 1.64 16 35 H 0.15 1.79 7.64 -52.49 -0.40 1.39 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -35.65 316.63 -6.30 -41.94 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -2.38 Total: -0.32 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -3.10 Total: -12.68 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.77 Total: -27.28 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -1.69 Total: -23.42 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.65 -6.30 -41.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250064971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.835 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds