Wall clock time and date at job start Tue Mar 31 2020 00:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99492 * 2 1 4 4 H 1.48504 * 109.47148 * 269.99961 * 3 2 1 5 5 H 1.48505 * 109.47136 * 30.00085 * 3 2 1 6 6 H 1.48500 * 109.46976 * 150.00162 * 3 2 1 7 7 C 1.37875 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99864 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99958 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46842 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46943 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47058 * 180.02562 * 11 10 9 13 13 C 1.38073 * 119.85168 * 89.99897 * 12 11 10 14 14 C 1.39734 * 120.15293 * 179.97438 * 13 12 11 15 15 C 1.47743 * 120.07588 * 179.97438 * 14 13 12 16 16 O 1.21468 * 120.00440 * 0.02562 * 15 14 13 17 17 O 1.34711 * 120.00226 * 180.02562 * 15 14 13 18 18 C 1.39349 * 119.84997 * 0.25454 * 14 13 12 19 19 C 1.39358 * 119.69762 * 359.51499 * 18 14 13 20 20 C 1.47739 * 120.08002 * 180.23217 * 19 18 14 21 21 O 1.21474 * 119.99763 * 180.23623 * 20 19 18 22 22 O 1.34701 * 120.00075 * 0.22841 * 20 19 18 23 23 C 1.38072 * 119.84454 * 269.97758 * 12 11 10 24 24 H 0.96999 * 120.00251 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47493 * 59.99776 * 9 7 2 26 26 H 1.09006 * 109.46814 * 299.99489 * 9 7 2 27 27 H 1.08998 * 109.46991 * 59.99798 * 10 9 7 28 28 H 1.08993 * 109.47264 * 299.99909 * 10 9 7 29 29 H 1.08997 * 109.47159 * 59.99624 * 11 10 9 30 30 H 1.09006 * 109.46901 * 299.99933 * 11 10 9 31 31 H 1.08005 * 119.92000 * 359.97438 * 13 12 11 32 32 H 0.96700 * 117.00324 * 180.02562 * 17 15 14 33 33 H 1.08005 * 120.15764 * 179.75209 * 18 14 13 34 34 H 0.96700 * 117.00358 * 180.02562 * 22 20 19 35 35 H 1.07999 * 119.92323 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4463 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1938 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5517 -2.6362 -0.0001 12 6 6.0541 -4.0570 -0.0009 13 6 6.2832 -4.7043 -1.1988 14 6 6.7495 -6.0215 -1.2068 15 6 6.9935 -6.7127 -2.4896 16 8 6.7892 -6.1359 -3.5389 17 8 7.4426 -7.9828 -2.4956 18 6 6.9784 -6.6836 -0.0022 19 6 6.7497 -6.0227 1.2032 20 6 6.9944 -6.7149 2.4852 21 8 6.7905 -6.1389 3.5351 22 8 7.4435 -7.9849 2.4900 23 6 6.2836 -4.7053 1.1964 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6806 0.8905 26 1 3.8752 -0.6794 -0.8896 27 1 3.6587 -3.1500 -0.8903 28 1 3.6581 -3.1504 0.8896 29 1 5.9150 -2.1224 0.8898 30 1 5.9149 -2.1223 -0.8901 31 1 6.1014 -4.1913 -2.1317 32 1 7.5878 -8.3930 -3.3591 33 1 7.3350 -7.7031 -0.0027 34 1 7.5885 -8.3961 3.3531 35 1 6.1023 -4.1931 2.1298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250064971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:06 Heat of formation + Delta-G solvation = -201.610249 kcal Electronic energy + Delta-G solvation = -20310.674591 eV Core-core repulsion = 16850.762016 eV Total energy + Delta-G solvation = -3459.912575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80237 -41.08578 -39.77097 -37.12925 -37.11718 -36.55864 -34.65157 -32.74058 -32.53848 -28.99066 -26.31899 -25.45511 -25.11128 -22.39426 -21.65925 -21.63760 -19.24196 -19.03045 -18.69723 -18.44685 -17.19001 -17.14528 -16.81571 -16.59656 -16.56894 -16.33539 -15.30962 -15.04093 -14.79836 -14.34341 -14.29986 -14.18711 -13.56916 -13.28958 -12.98938 -12.92732 -12.68556 -12.63358 -12.53437 -12.42405 -12.00709 -11.77467 -11.67978 -11.48224 -11.40692 -11.30787 -10.74505 -10.36310 -9.95059 -8.27753 -6.32144 -0.65386 -0.25548 1.13389 1.38197 1.40277 1.52315 1.64971 1.90095 1.99842 2.38364 2.58756 3.08105 3.45486 3.75784 3.82107 4.00975 4.03731 4.14186 4.42068 4.44339 4.45470 4.58951 4.86531 4.88299 4.92692 5.07661 5.11288 5.17260 5.34474 5.48751 5.53240 5.53405 5.57700 5.65800 5.70113 6.30653 6.76695 6.92716 6.93268 7.32664 8.89425 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.003915 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.424198 B = 7149.376947 C = 8325.494216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.014 4.014 10 C -0.092 4.092 11 C -0.077 4.077 12 C -0.094 4.094 13 C -0.020 4.020 14 C -0.148 4.148 15 C 0.539 3.461 16 O -0.544 6.544 17 O -0.499 6.499 18 C 0.005 3.995 19 C -0.148 4.148 20 C 0.539 3.461 21 O -0.544 6.544 22 O -0.499 6.499 23 C -0.020 4.020 24 H 0.265 0.735 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.437 0.563 33 H 0.175 0.825 34 H 0.437 0.563 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.610 -17.342 0.009 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.573 4.573 8 H 0.045 0.955 9 C -0.051 4.051 10 C -0.130 4.130 11 C -0.115 4.115 12 C -0.094 4.094 13 C -0.038 4.038 14 C -0.149 4.149 15 C 0.384 3.616 16 O -0.436 6.436 17 O -0.313 6.313 18 C -0.013 4.013 19 C -0.149 4.149 20 C 0.384 3.616 21 O -0.436 6.436 22 O -0.313 6.313 23 C -0.038 4.038 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.162 0.838 32 H 0.299 0.701 33 H 0.192 0.808 34 H 0.299 0.701 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 21.250 -16.622 0.012 26.979 hybrid contribution -0.411 0.257 -0.020 0.485 sum 20.839 -16.365 -0.008 26.496 Atomic orbital electron populations 1.70086 1.08499 1.28157 1.52902 1.26095 0.95635 1.03798 0.94101 0.85602 0.79631 0.77820 0.79251 1.19114 1.21245 1.16408 1.21569 0.92571 0.92928 1.50234 0.95464 1.19576 0.93501 0.95128 0.96937 1.21342 0.93715 0.97194 1.00701 1.20714 0.94921 0.91181 1.04641 1.19839 0.99986 0.97674 0.91881 1.21571 0.90538 0.92495 0.99220 1.19014 1.09477 0.95119 0.91283 1.20625 0.72352 0.80141 0.88447 1.90919 1.50198 1.67647 1.34802 1.84491 1.77619 1.26484 1.42697 1.21844 0.90161 1.00408 0.88934 1.19020 1.09478 0.95112 0.91290 1.20623 0.72352 0.80146 0.88445 1.90921 1.50214 1.67690 1.34753 1.84489 1.77614 1.26461 1.42715 1.21574 0.90546 0.92487 0.99229 0.92576 0.95717 0.95831 0.93475 0.93483 0.89387 0.89325 0.83785 0.70073 0.80784 0.70072 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.04 13.96 21.45 0.30 -60.74 16 2 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 3 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.24 -10.17 6.54 99.48 0.65 -9.51 16 7 C -0.54 -31.26 9.66 25.60 0.25 -31.01 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 9 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 10 C -0.09 -3.43 5.14 30.60 0.16 -3.27 16 11 C -0.08 -2.11 5.33 29.85 0.16 -1.95 16 12 C -0.09 -2.29 5.12 -19.94 -0.10 -2.39 16 13 C -0.02 -0.47 9.23 22.59 0.21 -0.26 16 14 C -0.15 -3.04 5.87 -20.14 -0.12 -3.16 16 15 C 0.54 10.72 8.27 70.34 0.58 11.30 16 16 O -0.54 -14.51 17.12 19.94 0.34 -14.17 16 17 O -0.50 -5.90 12.67 -56.21 -0.71 -6.62 16 18 C 0.00 0.08 9.18 22.81 0.21 0.29 16 19 C -0.15 -3.04 5.87 -20.13 -0.12 -3.16 16 20 C 0.54 10.72 8.27 70.33 0.58 11.31 16 21 O -0.54 -14.53 17.12 19.92 0.34 -14.18 16 22 O -0.50 -5.91 12.67 -56.11 -0.71 -6.62 16 23 C -0.02 -0.47 9.24 22.60 0.21 -0.26 16 24 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 25 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 26 H 0.02 1.02 7.57 -2.38 -0.02 1.01 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 30 H 0.09 2.20 8.08 -2.38 -0.02 2.18 16 31 H 0.14 3.43 7.64 -2.91 -0.02 3.41 16 32 H 0.44 1.24 9.11 -74.06 -0.67 0.56 16 33 H 0.17 2.24 7.15 -2.91 -0.02 2.22 16 34 H 0.44 1.24 9.11 -74.06 -0.67 0.56 16 35 H 0.14 3.43 7.64 -2.91 -0.02 3.41 16 Total: -1.00 -78.70 316.63 3.79 -74.91 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -0.26 Total: 3.89 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 2.60 Total: -22.65 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.30 Total: -60.74 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.74 Total: -41.59 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -78.70 3.79 -74.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250064971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.699 kcal (2) G-P(sol) polarization free energy of solvation -78.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds