Wall clock time and date at job start Tue Mar 31 2020 00:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99885 * 2 1 4 4 H 1.48506 * 109.46792 * 240.00101 * 3 2 1 5 5 H 1.48497 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47248 * 120.00319 * 3 2 1 7 7 C 1.37878 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99691 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46757 * 60.00839 * 9 7 2 11 11 O 1.45198 * 109.46756 * 180.02562 * 9 7 2 12 12 C 1.34801 * 116.99673 * 209.99983 * 11 9 7 13 13 O 1.21538 * 120.00235 * 0.02562 * 12 11 9 14 14 C 1.46953 * 119.99893 * 180.02562 * 12 11 9 15 15 C 1.32182 * 118.87986 * 179.73423 * 14 12 11 16 16 C 1.50273 * 122.56242 * 180.14394 * 15 14 12 17 17 O 1.42884 * 110.14391 * 344.79901 * 16 15 14 18 18 C 1.43276 * 113.10393 * 50.34975 * 17 16 15 19 19 C 1.50416 * 118.88208 * 0.02562 * 14 12 11 20 20 C 1.50695 * 109.47350 * 300.00617 * 9 7 2 21 21 C 1.34515 * 125.79319 * 99.99929 * 20 9 7 22 22 C 1.41376 * 106.84242 * 179.73499 * 21 20 9 23 23 C 1.34516 * 106.84089 * 0.02562 * 22 21 20 24 24 O 1.34298 * 108.42070 * 0.02562 * 23 22 21 25 25 H 0.97006 * 119.99947 * 359.97438 * 1 2 3 26 26 H 1.08001 * 118.72039 * 0.36496 * 15 14 12 27 27 H 1.09001 * 109.49676 * 224.49145 * 16 15 14 28 28 H 1.08999 * 109.07764 * 104.84021 * 16 15 14 29 29 H 1.09000 * 109.63889 * 171.44438 * 18 17 16 30 30 H 1.08997 * 109.63899 * 50.82642 * 18 17 16 31 31 H 1.08999 * 109.45554 * 283.35058 * 19 14 12 32 32 H 1.09003 * 109.45594 * 43.28900 * 19 14 12 33 33 H 1.08003 * 126.57278 * 359.76766 * 21 20 9 34 34 H 1.08003 * 126.57866 * 179.97438 * 22 21 20 35 35 H 1.08002 * 125.78796 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 8 2.1946 -3.6027 -0.0005 12 6 1.8017 -4.7438 -0.6011 13 8 0.7008 -4.8142 -1.1111 14 6 2.7045 -5.9027 -0.6391 15 6 2.2946 -7.0122 -1.2291 16 6 3.1478 -8.2464 -1.3129 17 8 4.5063 -7.9272 -1.0061 18 6 4.6485 -7.1861 0.2119 19 6 4.0611 -5.7881 0.0005 20 6 0.3850 -2.5792 1.2301 21 6 -0.9352 -2.3261 1.2809 22 6 -1.3395 -2.5273 2.6206 23 6 -0.2422 -2.8908 3.3085 24 8 0.7995 -2.9197 2.4614 25 1 -0.4850 0.8401 0.0004 26 1 1.3094 -7.0314 -1.6712 27 1 3.0921 -8.6594 -2.3201 28 1 2.7796 -8.9832 -0.5991 29 1 5.7043 -7.1047 0.4701 30 1 4.1102 -7.6919 1.0134 31 1 4.7208 -5.2117 -0.6481 32 1 3.9675 -5.2842 0.9626 33 1 -1.5653 -2.0272 0.4563 34 1 -2.3378 -2.4107 3.0160 35 1 -0.2052 -3.1204 4.3632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660753.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:31 Heat of formation + Delta-G solvation = -99.092734 kcal Electronic energy + Delta-G solvation = -21688.411796 eV Core-core repulsion = 18232.944714 eV Total energy + Delta-G solvation = -3455.467082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37420 -39.98630 -38.79409 -35.85090 -33.75619 -33.23347 -31.73652 -31.14395 -29.67586 -26.87508 -26.13722 -24.00565 -23.07598 -21.45338 -20.54120 -19.45416 -18.28378 -17.50294 -16.81353 -16.79174 -16.10860 -15.72456 -15.34171 -14.99042 -14.88616 -14.55903 -14.35777 -13.67284 -13.09328 -12.93632 -12.75539 -12.50864 -12.03207 -11.82560 -11.60001 -11.53737 -11.31558 -11.16440 -10.97660 -10.80676 -10.41247 -10.18315 -10.07296 -9.58644 -9.43332 -9.10674 -8.84170 -8.66923 -7.28529 -6.23416 -4.41470 1.34882 2.83972 3.22095 3.25021 3.26836 3.40038 3.43795 3.78916 3.93661 4.16356 4.25999 4.71264 4.81129 4.96414 5.06337 5.16572 5.19870 5.27787 5.52842 5.71741 5.75459 5.84228 5.99607 6.04073 6.25871 6.33468 6.57760 6.68708 6.94954 6.95767 7.11334 7.20334 7.33254 7.66470 7.67564 7.82065 8.31328 8.46791 8.74309 9.25377 10.75582 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.005547 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.906887 B = 5047.005346 C = 5772.232222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.078 0.922 9 C 0.298 3.702 10 H 0.079 0.921 11 O -0.340 6.340 12 C 0.489 3.511 13 O -0.516 6.516 14 C -0.128 4.128 15 C -0.128 4.128 16 C 0.090 3.910 17 O -0.380 6.380 18 C 0.059 3.941 19 C -0.115 4.115 20 C 0.026 3.974 21 C -0.179 4.179 22 C -0.217 4.217 23 C -0.089 4.089 24 O -0.177 6.177 25 H 0.269 0.731 26 H 0.136 0.864 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 -12.049 1.655 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.741 3.259 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.096 0.904 9 C 0.245 3.755 10 H 0.096 0.904 11 O -0.256 6.256 12 C 0.334 3.666 13 O -0.407 6.407 14 C -0.129 4.129 15 C -0.147 4.147 16 C 0.014 3.986 17 O -0.298 6.298 18 C -0.018 4.018 19 C -0.152 4.152 20 C -0.025 4.025 21 C -0.199 4.199 22 C -0.237 4.237 23 C -0.156 4.156 24 O -0.073 6.073 25 H 0.079 0.921 26 H 0.154 0.846 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.451 -12.001 1.475 12.884 hybrid contribution -0.548 1.400 0.372 1.549 sum 3.902 -10.600 1.847 11.446 Atomic orbital electron populations 1.70021 1.05932 1.27811 1.46457 1.24944 0.95140 0.99559 0.93970 0.86281 0.79346 0.81257 0.79026 1.19696 1.20906 1.19827 1.20845 0.94123 0.87518 1.54411 0.90435 1.19194 0.85742 0.81768 0.88824 0.90393 1.86641 1.48051 1.21726 1.69202 1.21308 0.85530 0.84215 0.75534 1.90796 1.22232 1.83550 1.44109 1.20340 0.96663 0.92689 1.03208 1.23729 1.01272 0.94257 0.95408 1.21538 0.81343 0.93424 1.02310 1.88109 1.24890 1.74573 1.42244 1.22739 1.01963 0.90683 0.86390 1.21033 0.92989 0.98433 1.02723 1.23540 0.94153 1.00195 0.84580 1.21221 0.94822 1.06927 0.96885 1.21691 0.98940 1.07898 0.95151 1.23606 0.86065 1.10281 0.95665 1.83985 1.36546 1.68555 1.18255 0.92074 0.84599 0.87012 0.91017 0.87983 0.92554 0.89012 0.88439 0.84097 0.85116 0.79864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.02 10.94 55.43 0.61 -23.41 16 2 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 3 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.70 8.89 -34.44 -0.31 -15.00 16 8 H 0.08 2.09 7.81 -52.48 -0.41 1.68 16 9 C 0.30 7.94 2.42 -29.04 -0.07 7.87 16 10 H 0.08 2.23 7.15 -51.93 -0.37 1.86 16 11 O -0.34 -8.12 9.26 -42.86 -0.40 -8.52 16 12 C 0.49 10.49 7.82 34.26 0.27 10.76 16 13 O -0.52 -12.21 15.32 -19.29 -0.30 -12.51 16 14 C -0.13 -2.10 5.86 -103.16 -0.60 -2.70 16 15 C -0.13 -1.75 9.58 -36.44 -0.35 -2.10 16 16 C 0.09 0.93 7.04 35.80 0.25 1.18 16 17 O -0.38 -4.59 10.83 -35.23 -0.38 -4.97 16 18 C 0.06 0.64 6.88 37.21 0.26 0.90 16 19 C -0.11 -1.58 5.73 -27.96 -0.16 -1.74 16 20 C 0.03 0.69 5.53 -35.63 -0.20 0.49 16 21 C -0.18 -4.48 9.18 -39.71 -0.36 -4.85 16 22 C -0.22 -4.66 10.91 -39.70 -0.43 -5.10 16 23 C -0.09 -1.83 12.09 29.42 0.36 -1.47 16 24 O -0.18 -4.35 10.65 4.35 0.05 -4.30 16 25 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.14 1.89 7.29 -52.49 -0.38 1.51 16 27 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.10 1.37 8.00 -51.93 -0.42 0.96 16 33 H 0.14 3.61 7.86 -52.48 -0.41 3.20 16 34 H 0.13 2.37 8.06 -52.48 -0.42 1.94 16 35 H 0.18 2.85 8.06 -52.49 -0.42 2.42 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -31.84 308.30 -6.33 -38.17 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.08 Total: 4.99 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.45 Total: -9.96 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.61 Total: -23.41 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.03 Total: -30.30 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.84 -6.33 -38.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660753.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.924 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds