Wall clock time and date at job start Tue Mar 31 2020 00:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99885 * 2 1 4 4 H 1.48506 * 109.46792 * 240.00101 * 3 2 1 5 5 H 1.48497 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47248 * 120.00319 * 3 2 1 7 7 C 1.37878 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99691 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46757 * 60.00839 * 9 7 2 11 11 O 1.45198 * 109.46756 * 180.02562 * 9 7 2 12 12 C 1.34801 * 116.99673 * 209.99983 * 11 9 7 13 13 O 1.21538 * 120.00235 * 0.02562 * 12 11 9 14 14 C 1.46953 * 119.99893 * 180.02562 * 12 11 9 15 15 C 1.32182 * 118.87986 * 179.73423 * 14 12 11 16 16 C 1.50273 * 122.56242 * 180.14394 * 15 14 12 17 17 O 1.42884 * 110.14391 * 344.79901 * 16 15 14 18 18 C 1.43276 * 113.10393 * 50.34975 * 17 16 15 19 19 C 1.50416 * 118.88208 * 0.02562 * 14 12 11 20 20 C 1.50695 * 109.47350 * 300.00617 * 9 7 2 21 21 C 1.34515 * 125.79319 * 99.99929 * 20 9 7 22 22 C 1.41376 * 106.84242 * 179.73499 * 21 20 9 23 23 C 1.34516 * 106.84089 * 0.02562 * 22 21 20 24 24 O 1.34298 * 108.42070 * 0.02562 * 23 22 21 25 25 H 0.97006 * 119.99947 * 359.97438 * 1 2 3 26 26 H 1.08001 * 118.72039 * 0.36496 * 15 14 12 27 27 H 1.09001 * 109.49676 * 224.49145 * 16 15 14 28 28 H 1.08999 * 109.07764 * 104.84021 * 16 15 14 29 29 H 1.09000 * 109.63889 * 171.44438 * 18 17 16 30 30 H 1.08997 * 109.63899 * 50.82642 * 18 17 16 31 31 H 1.08999 * 109.45554 * 283.35058 * 19 14 12 32 32 H 1.09003 * 109.45594 * 43.28900 * 19 14 12 33 33 H 1.08003 * 126.57278 * 359.76766 * 21 20 9 34 34 H 1.08003 * 126.57866 * 179.97438 * 22 21 20 35 35 H 1.08002 * 125.78796 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 8 2.1946 -3.6027 -0.0005 12 6 1.8017 -4.7438 -0.6011 13 8 0.7008 -4.8142 -1.1111 14 6 2.7045 -5.9027 -0.6391 15 6 2.2946 -7.0122 -1.2291 16 6 3.1478 -8.2464 -1.3129 17 8 4.5063 -7.9272 -1.0061 18 6 4.6485 -7.1861 0.2119 19 6 4.0611 -5.7881 0.0005 20 6 0.3850 -2.5792 1.2301 21 6 -0.9352 -2.3261 1.2809 22 6 -1.3395 -2.5273 2.6206 23 6 -0.2422 -2.8908 3.3085 24 8 0.7995 -2.9197 2.4614 25 1 -0.4850 0.8401 0.0004 26 1 1.3094 -7.0314 -1.6712 27 1 3.0921 -8.6594 -2.3201 28 1 2.7796 -8.9832 -0.5991 29 1 5.7043 -7.1047 0.4701 30 1 4.1102 -7.6919 1.0134 31 1 4.7208 -5.2117 -0.6481 32 1 3.9675 -5.2842 0.9626 33 1 -1.5653 -2.0272 0.4563 34 1 -2.3378 -2.4107 3.0160 35 1 -0.2052 -3.1204 4.3632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660753.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:31 Heat of formation + Delta-G solvation = -119.103875 kcal Electronic energy + Delta-G solvation = -21689.279544 eV Core-core repulsion = 18232.944714 eV Total energy + Delta-G solvation = -3456.334830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.21626 -41.50397 -39.99408 -37.65881 -35.36617 -34.83199 -33.58581 -32.13073 -31.57433 -28.70264 -27.44231 -25.34717 -24.60019 -22.99399 -22.35481 -21.27643 -19.75259 -18.93924 -18.57556 -18.46342 -17.54076 -17.09491 -16.90442 -16.79996 -16.38974 -16.02052 -15.70563 -15.00264 -14.65425 -14.53745 -14.10844 -13.62695 -13.62167 -13.52157 -13.49311 -13.18234 -13.07524 -12.82328 -12.55843 -12.24411 -12.08760 -11.98057 -11.46846 -11.41306 -10.83383 -10.71008 -10.55511 -10.25198 -9.15703 -8.27273 -6.56363 0.02038 1.05820 1.37470 1.42073 1.49127 1.80462 1.83521 2.07426 2.36508 2.38896 2.93086 2.98478 3.58367 3.69812 3.80380 4.13690 4.28147 4.29902 4.36569 4.42685 4.47667 4.53492 4.60991 4.77571 4.80474 4.97565 5.11150 5.15873 5.26020 5.36046 5.40689 5.45541 5.62246 5.76786 5.89780 6.09360 6.44733 6.51853 6.81574 7.15293 8.69987 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.005547 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.906887 B = 5047.005346 C = 5772.232222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.025 3.975 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.559 4.559 8 H 0.074 0.926 9 C 0.301 3.699 10 H 0.040 0.960 11 O -0.348 6.348 12 C 0.481 3.519 13 O -0.552 6.552 14 C -0.165 4.165 15 C -0.091 4.091 16 C 0.089 3.911 17 O -0.390 6.390 18 C 0.065 3.935 19 C -0.111 4.111 20 C -0.004 4.004 21 C -0.194 4.194 22 C -0.227 4.227 23 C -0.069 4.069 24 O -0.194 6.194 25 H 0.271 0.729 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.167 0.833 35 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -13.385 3.094 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.596 4.596 8 H 0.092 0.908 9 C 0.247 3.753 10 H 0.057 0.943 11 O -0.264 6.264 12 C 0.328 3.672 13 O -0.446 6.446 14 C -0.166 4.166 15 C -0.110 4.110 16 C 0.014 3.986 17 O -0.309 6.309 18 C -0.011 4.011 19 C -0.148 4.148 20 C -0.055 4.055 21 C -0.214 4.214 22 C -0.246 4.246 23 C -0.136 4.136 24 O -0.092 6.092 25 H 0.080 0.920 26 H 0.148 0.852 27 H 0.159 0.841 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.140 0.860 34 H 0.185 0.815 35 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.443 -13.360 2.910 14.717 hybrid contribution -0.959 1.672 -0.095 1.929 sum 4.485 -11.689 2.815 12.832 Atomic orbital electron populations 1.70157 1.07250 1.28627 1.46520 1.25847 0.96062 1.02840 0.93123 0.85250 0.78187 0.76748 0.79364 1.18741 1.20032 1.19280 1.21111 0.94157 0.88669 1.55620 0.90766 1.18762 0.85695 0.82646 0.88215 0.94263 1.86623 1.47608 1.22238 1.69951 1.22355 0.86038 0.84542 0.74217 1.90756 1.24021 1.84026 1.45763 1.20367 0.97552 0.91534 1.07190 1.24181 1.01174 0.94452 0.91183 1.21887 0.80121 0.91706 1.04917 1.88111 1.25540 1.74422 1.42779 1.22824 1.03392 0.88477 0.86427 1.21036 0.91481 1.00637 1.01642 1.23289 0.94464 1.02524 0.85176 1.21303 0.94598 1.07058 0.98411 1.22045 1.01120 1.08081 0.93334 1.24711 0.84528 1.07103 0.97215 1.83956 1.38151 1.68942 1.18103 0.91952 0.85172 0.84083 0.87767 0.85611 0.91004 0.89814 0.89565 0.86038 0.81548 0.74230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.04 10.94 21.45 0.23 -50.80 16 2 C 0.02 1.37 5.30 84.66 0.45 1.82 16 3 Si 0.98 43.33 29.54 68.60 2.03 45.35 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.56 -32.33 8.89 25.60 0.23 -32.10 16 8 H 0.07 4.19 7.81 -2.91 -0.02 4.17 16 9 C 0.30 17.10 2.42 29.10 0.07 17.17 16 10 H 0.04 2.48 7.15 -2.39 -0.02 2.46 16 11 O -0.35 -17.73 9.26 -55.12 -0.51 -18.24 16 12 C 0.48 21.85 7.82 70.10 0.55 22.40 16 13 O -0.55 -27.98 15.32 19.71 0.30 -27.67 16 14 C -0.17 -5.50 5.86 -18.68 -0.11 -5.61 16 15 C -0.09 -2.38 9.58 24.54 0.24 -2.15 16 16 C 0.09 1.53 7.04 71.10 0.50 2.03 16 17 O -0.39 -8.15 10.83 -148.98 -1.61 -9.77 16 18 C 0.06 1.25 6.88 72.02 0.50 1.74 16 19 C -0.11 -3.03 5.73 29.80 0.17 -2.86 16 20 C 0.00 -0.22 5.53 24.83 0.14 -0.08 16 21 C -0.19 -10.05 9.18 22.19 0.20 -9.85 16 22 C -0.23 -9.46 10.91 22.19 0.24 -9.22 16 23 C -0.07 -2.71 12.09 66.97 0.81 -1.90 16 24 O -0.19 -9.61 10.65 -1.14 -0.01 -9.62 16 25 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 26 H 0.13 3.56 7.29 -2.91 -0.02 3.54 16 27 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.09 2.49 8.00 -2.39 -0.02 2.47 16 33 H 0.12 6.63 7.86 -2.91 -0.02 6.61 16 34 H 0.17 5.59 8.06 -2.91 -0.02 5.56 16 35 H 0.24 6.30 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -73.90 308.30 5.51 -68.39 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.10 Total: 20.94 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 3.98 Total: -18.58 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.23 Total: -50.80 kcal Atomic # 8 Polarization: -63.46 SS G_CDS: -1.83 Total: -65.30 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.90 5.51 -68.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660753.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.716 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds