Wall clock time and date at job start Tue Mar 31 2020 00:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31336 * 1 3 3 Si 1.86796 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47216 * 90.00058 * 3 2 1 5 5 H 1.48495 * 109.47326 * 209.99881 * 3 2 1 6 6 H 1.48497 * 109.47290 * 330.00370 * 3 2 1 7 7 C 1.39096 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99697 * 171.43314 * 7 2 1 9 9 N 1.36767 * 119.99872 * 351.42546 * 7 2 1 10 10 C 1.34778 * 119.99775 * 218.50988 * 9 7 2 11 11 O 1.21677 * 119.99862 * 185.11131 * 10 9 7 12 12 C 1.47072 * 120.00266 * 5.10885 * 10 9 7 13 13 N 1.30648 * 125.54666 * 186.82719 * 12 10 9 14 14 C 1.30712 * 115.88604 * 180.02562 * 13 12 10 15 15 C 1.50698 * 122.10857 * 180.02562 * 14 13 12 16 16 C 1.52995 * 117.50371 * 163.59952 * 15 14 13 17 17 C 1.52995 * 117.50198 * 94.97123 * 15 14 13 18 18 C 1.34243 * 115.78825 * 359.97438 * 14 13 12 19 19 S 1.71074 * 109.10445 * 359.73366 * 18 14 13 20 20 C 1.46496 * 120.00142 * 38.51015 * 9 7 2 21 21 C 1.53005 * 117.49672 * 131.84926 * 20 9 7 22 22 C 1.53006 * 117.49593 * 63.19034 * 20 9 7 23 23 H 0.96998 * 120.00076 * 0.02562 * 1 2 3 24 24 H 1.09004 * 115.54545 * 309.30451 * 15 14 13 25 25 H 1.09005 * 117.49756 * 359.97438 * 16 15 14 26 26 H 1.08997 * 117.50817 * 145.01671 * 16 15 14 27 27 H 1.09003 * 117.50331 * 214.97840 * 17 15 14 28 28 H 1.09000 * 117.49975 * 359.97438 * 17 15 14 29 29 H 1.07993 * 125.44576 * 179.97438 * 18 14 13 30 30 H 1.08998 * 115.55048 * 277.52105 * 20 9 7 31 31 H 1.08992 * 117.50178 * 0.02562 * 21 20 9 32 32 H 1.09006 * 117.49281 * 145.02575 * 21 20 9 33 33 H 1.08999 * 117.49809 * 214.97871 * 22 20 9 34 34 H 1.09000 * 117.50134 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6176 0.0000 4 1 2.4950 2.0463 1.4001 5 1 3.5450 1.4400 -0.7000 6 1 1.4450 2.6527 -0.6999 7 6 2.0088 -1.2046 -0.0005 8 1 3.0797 -1.2098 -0.1399 9 7 1.3363 -2.3825 0.1755 10 6 1.8854 -3.3682 0.9127 11 8 1.3313 -4.4486 0.9930 12 6 3.1542 -3.1381 1.6199 13 7 3.8440 -4.0463 2.2573 14 6 4.9483 -3.6327 2.8212 15 6 5.8511 -4.5616 3.5913 16 6 7.2769 -4.0856 3.8766 17 6 7.0300 -5.1842 2.8407 18 6 5.2281 -2.3284 2.6703 19 16 3.9947 -1.5953 1.7387 20 6 0.0193 -2.5727 -0.4371 21 6 -0.2200 -3.8721 -1.2086 22 6 -0.0589 -2.5510 -1.9650 23 1 -0.4850 0.8400 -0.0004 24 1 5.3614 -5.1694 4.3521 25 1 7.5621 -3.1006 3.5070 26 1 7.7255 -4.3800 4.8254 27 1 7.3163 -6.2014 3.1080 28 1 7.1524 -4.9222 1.7898 29 1 6.0954 -1.8237 3.0696 30 1 -0.8214 -2.1536 0.1159 31 1 0.6024 -4.5856 -1.2600 32 1 -1.2182 -4.3077 -1.1635 33 1 -0.9512 -2.1181 -2.4172 34 1 0.8695 -2.3949 -2.5143 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263712550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:58 Heat of formation + Delta-G solvation = 57.558117 kcal Electronic energy + Delta-G solvation = -19266.748508 eV Core-core repulsion = 16293.119940 eV Total energy + Delta-G solvation = -2973.628569 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15740 -40.38123 -37.76506 -37.13165 -35.59329 -33.39953 -30.90081 -27.60262 -26.97496 -25.05533 -23.23010 -23.12626 -22.47452 -21.11266 -20.03885 -19.61103 -18.37748 -17.59908 -17.10007 -16.72939 -16.35939 -16.13416 -15.80657 -15.25480 -15.07758 -14.26336 -14.20070 -13.90822 -13.62058 -13.23484 -13.13399 -12.81220 -12.35133 -12.29658 -12.08172 -12.01072 -11.57810 -11.46947 -11.29007 -11.06617 -10.91986 -10.70026 -10.39628 -10.31474 -9.68841 -9.41665 -8.43584 -6.25658 -0.49441 0.55511 1.11810 1.40413 1.45940 1.56823 1.57860 2.14089 2.39968 2.46632 2.94363 2.99974 3.19586 3.53289 3.96314 4.03770 4.11812 4.22355 4.29571 4.33578 4.42004 4.51364 4.58672 4.77305 4.84897 4.97125 5.03641 5.18970 5.23428 5.24221 5.28488 5.36331 5.43135 5.76617 6.25803 6.82659 6.92606 7.36758 7.78980 8.56720 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.006910 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.611201 B = 4051.171112 C = 5266.101981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.038 3.962 3 Si 0.954 3.046 4 H -0.257 1.257 5 H -0.246 1.246 6 H -0.271 1.271 7 C -0.368 4.368 8 H 0.108 0.892 9 N -0.408 5.408 10 C 0.519 3.481 11 O -0.605 6.605 12 C -0.016 4.016 13 N -0.455 5.455 14 C 0.061 3.939 15 C -0.110 4.110 16 C -0.142 4.142 17 C -0.167 4.167 18 C -0.328 4.328 19 S 0.278 5.722 20 C 0.105 3.895 21 C -0.181 4.181 22 C -0.146 4.146 23 H 0.282 0.718 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.203 0.797 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.237 2.368 2.534 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.173 4.173 3 Si 0.775 3.225 4 H -0.182 1.182 5 H -0.169 1.169 6 H -0.196 1.196 7 C -0.500 4.500 8 H 0.125 0.875 9 N -0.126 5.126 10 C 0.306 3.694 11 O -0.493 6.493 12 C -0.289 4.289 13 N -0.173 5.173 14 C -0.077 4.077 15 C -0.131 4.131 16 C -0.179 4.179 17 C -0.204 4.204 18 C -0.468 4.468 19 S 0.539 5.461 20 C 0.001 3.999 21 C -0.219 4.219 22 C -0.183 4.183 23 H 0.093 0.907 24 H 0.129 0.871 25 H 0.123 0.877 26 H 0.143 0.857 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.220 0.780 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.371 2.461 2.203 9.937 hybrid contribution 0.379 -0.060 0.412 0.563 sum 9.751 2.401 2.615 10.377 Atomic orbital electron populations 1.69930 1.07565 1.29608 1.41525 1.26253 0.96044 1.02215 0.92761 0.85473 0.79744 0.77145 0.80160 1.18181 1.16915 1.19596 1.19728 0.92864 0.83121 1.54271 0.87503 1.42927 1.16235 1.13222 1.40249 1.17246 0.84524 0.85591 0.82005 1.90634 1.64868 1.26591 1.67162 1.27107 1.01279 0.93869 1.06609 1.66443 1.06366 1.35199 1.09255 1.19690 0.93481 0.93060 1.01459 1.20426 0.88901 1.01869 1.01903 1.23144 0.94174 0.99443 1.01127 1.23017 1.00189 0.99504 0.97735 1.27714 1.09361 0.99690 1.10024 1.84707 1.10290 1.11587 1.39519 1.21398 0.86424 0.99446 0.92645 1.23181 1.02435 0.91321 1.04944 1.22917 1.02560 0.99004 0.93864 0.90742 0.87120 0.87704 0.85734 0.86769 0.89961 0.78002 0.87756 0.91036 0.87439 0.87479 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -40.27 11.01 21.69 0.24 -40.03 16 2 C 0.04 1.71 5.45 84.97 0.46 2.17 16 3 Si 0.95 34.23 29.56 68.60 2.03 36.26 16 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 6 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.37 -17.37 6.95 84.13 0.59 -16.79 16 8 H 0.11 4.83 5.25 -16.17 -0.08 4.75 16 9 N -0.41 -20.73 2.90 -617.21 -1.79 -22.52 16 10 C 0.52 27.86 7.48 86.56 0.65 28.50 16 11 O -0.61 -35.57 15.38 -4.28 -0.07 -35.63 16 12 C -0.02 -0.76 7.26 87.19 0.63 -0.12 16 13 N -0.46 -21.26 10.58 -178.35 -1.89 -23.15 16 14 C 0.06 2.25 6.35 41.81 0.27 2.52 16 15 C -0.11 -3.19 6.28 -11.54 -0.07 -3.26 16 16 C -0.14 -2.76 9.89 30.59 0.30 -2.46 16 17 C -0.17 -3.92 10.23 30.59 0.31 -3.61 16 18 C -0.33 -10.60 10.23 66.91 0.68 -9.92 16 19 S 0.28 10.56 18.58 -56.49 -1.05 9.51 16 20 C 0.10 5.01 4.08 45.00 0.18 5.19 16 21 C -0.18 -7.73 9.23 30.62 0.28 -7.44 16 22 C -0.15 -5.94 10.29 30.62 0.32 -5.63 16 23 H 0.28 12.38 8.31 -92.71 -0.77 11.61 16 24 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 25 H 0.10 1.85 6.72 -2.38 -0.02 1.83 16 26 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.20 4.77 6.85 -2.91 -0.02 4.75 16 30 H 0.10 5.27 7.27 -2.39 -0.02 5.26 16 31 H 0.07 3.35 7.30 -2.39 -0.02 3.33 16 32 H 0.11 4.02 8.14 -2.38 -0.02 4.00 16 33 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 34 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -62.21 301.77 3.14 -59.07 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 1.06 Total: 27.34 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 4.60 Total: -10.84 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -3.44 Total: -85.70 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.07 Total: -35.63 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Atomic # 16 Polarization: 10.56 SS G_CDS: -1.05 Total: 9.51 kcal Total: -62.21 3.14 -59.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263712550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.625 kcal (2) G-P(sol) polarization free energy of solvation -62.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds