Wall clock time and date at job start Tue Mar 31 2020 00:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46911 * 2 1 4 4 N 1.46503 * 109.46957 * 119.99376 * 2 1 3 5 5 C 1.34777 * 120.00385 * 275.00025 * 4 2 1 6 6 O 1.21695 * 119.99724 * 0.02562 * 5 4 2 7 7 C 1.46372 * 120.00523 * 180.02562 * 5 4 2 8 8 H 1.08010 * 119.99400 * 359.97438 * 7 5 4 9 9 C 1.40043 * 120.00377 * 180.02562 * 7 5 4 10 10 N 1.30669 * 120.00077 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 119.99980 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47131 * 89.99971 * 11 9 7 13 13 H 1.48499 * 109.47213 * 209.99557 * 11 9 7 14 14 H 1.48501 * 109.47188 * 329.99938 * 11 9 7 15 15 C 1.50695 * 109.47411 * 239.99394 * 2 1 3 16 16 N 1.30834 * 125.96516 * 265.02688 * 15 2 1 17 17 C 1.33233 * 109.82996 * 179.73851 * 16 15 2 18 18 C 1.50702 * 125.52643 * 179.97438 * 17 16 15 19 19 F 1.39899 * 109.47466 * 104.99690 * 18 17 16 20 20 F 1.39900 * 109.47209 * 224.99516 * 18 17 16 21 21 F 1.39900 * 109.47069 * 344.99681 * 18 17 16 22 22 N 1.30708 * 108.95078 * 359.97438 * 17 16 15 23 23 N 1.34429 * 125.95883 * 84.71712 * 15 2 1 24 24 H 0.97003 * 126.82753 * 0.26347 * 23 15 2 25 25 H 1.09002 * 109.47436 * 300.00145 * 1 2 3 26 26 H 1.09000 * 109.47393 * 60.00439 * 1 2 3 27 27 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 28 28 H 0.97006 * 119.99771 * 95.00756 * 4 2 1 29 29 H 0.96996 * 120.00612 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8571 1.1626 2.4119 7 6 2.6354 -0.7078 3.5523 8 1 2.8922 -1.7558 3.5038 9 6 2.7686 -0.0092 4.7587 10 7 2.4574 1.2585 4.8175 11 14 3.3912 -0.8897 6.2840 12 1 4.8712 -0.7844 6.3469 13 1 2.7987 -0.2640 7.4934 14 1 2.9989 -2.3207 6.2243 15 6 2.0323 -0.7105 -1.2303 16 7 2.3750 -1.9710 -1.3036 17 6 2.7661 -2.2618 -2.5436 18 6 3.2353 -3.6124 -3.0199 19 9 2.2300 -4.2119 -3.7860 20 9 4.3863 -3.4578 -3.7999 21 9 3.5253 -4.4212 -1.9159 22 7 2.6768 -1.1857 -3.2801 23 7 2.2010 -0.1611 -2.4456 24 1 2.0283 0.7599 -2.6964 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6317 1.1528 29 1 2.5500 1.7425 5.6529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001304133237.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:01 Heat of formation + Delta-G solvation = -103.236449 kcal Electronic energy + Delta-G solvation = -21317.886542 eV Core-core repulsion = 17249.135443 eV Total energy + Delta-G solvation = -4068.751099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.32695 -47.88082 -47.79267 -42.60145 -37.73891 -34.73159 -33.22099 -32.50858 -31.35241 -29.65269 -27.14911 -26.23583 -24.21195 -22.02488 -21.17512 -19.45193 -18.93843 -18.76340 -18.40764 -17.55335 -17.04753 -15.89833 -15.43344 -15.28324 -14.67155 -14.59284 -14.29095 -14.23806 -13.94414 -13.93678 -13.51624 -13.39795 -12.85269 -12.70472 -12.47504 -11.90807 -11.84689 -11.20475 -11.12622 -10.98037 -10.70493 -10.55395 -10.46030 -10.27180 -9.96164 -8.92047 -7.79965 -7.75743 -6.27481 -4.72090 1.04796 1.78749 2.28101 2.45797 3.12105 3.19551 3.23139 3.23864 3.64463 4.05454 4.14403 4.22542 4.47384 4.48894 4.90335 5.34891 5.39991 5.59931 5.70232 5.82523 5.87180 6.14033 6.49460 6.64599 7.37861 7.52505 7.81955 7.91213 8.25219 8.95501 9.38030 10.47736 10.66020 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.004457 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.595247 B = 6280.145027 C = 7076.381201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.229 3.771 3 H 0.105 0.895 4 N -0.751 5.751 5 C 0.556 3.444 6 O -0.581 6.581 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.909 3.091 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.263 1.263 15 C 0.312 3.688 16 N -0.497 5.497 17 C 0.141 3.859 18 C 0.577 3.423 19 F -0.164 7.164 20 F -0.162 7.162 21 F -0.150 7.150 22 N -0.261 5.261 23 N -0.460 5.460 24 H 0.450 0.550 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.396 0.604 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -5.624 -13.804 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.118 3.882 3 H 0.123 0.877 4 N -0.409 5.409 5 C 0.362 3.638 6 O -0.464 6.464 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.132 4.132 10 N -0.395 5.395 11 Si 0.734 3.266 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.187 1.187 15 C 0.033 3.967 16 N -0.225 5.225 17 C -0.144 4.144 18 C 0.520 3.480 19 F -0.145 7.145 20 F -0.144 7.144 21 F -0.131 7.131 22 N -0.093 5.093 23 N -0.179 5.179 24 H 0.298 0.702 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.230 0.770 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.773 -4.880 -14.134 14.973 hybrid contribution 0.350 -0.322 0.474 0.672 sum -0.422 -5.203 -13.660 14.624 Atomic orbital electron populations 1.22227 0.93716 1.02752 1.02842 1.19098 0.94004 0.95838 0.79217 0.87702 1.46217 1.73178 1.13867 1.07642 1.18275 0.77892 0.86353 0.81317 1.90603 1.55180 1.16332 1.84267 1.20861 1.46372 0.97407 0.92930 0.91082 1.25703 0.93253 0.94500 0.99772 1.70003 1.34855 1.08204 1.26476 0.86337 0.79361 0.80347 0.80563 1.19710 1.20453 1.18747 1.25200 0.93164 0.88888 0.89400 1.70238 1.20429 1.13658 1.18171 1.23707 1.04745 0.94992 0.90942 1.16269 0.75163 0.81366 0.75251 1.93257 1.60688 1.84529 1.76023 1.93258 1.50205 1.95635 1.75261 1.93292 1.93170 1.73871 1.52731 1.77942 1.19263 0.95781 1.16314 1.48044 1.49858 1.12737 1.07275 0.70222 0.89634 0.92916 0.92016 0.77027 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.47 37.15 0.35 -1.96 15 2 C 0.23 3.85 3.12 -69.09 -0.22 3.63 15 3 H 0.11 1.81 7.58 -51.93 -0.39 1.42 15 4 N -0.75 -15.83 5.06 -56.35 -0.29 -16.11 15 5 C 0.56 14.80 7.71 -12.99 -0.10 14.70 15 6 O -0.58 -17.25 14.68 5.19 0.08 -17.17 15 7 C -0.54 -14.66 9.54 -35.64 -0.34 -15.00 15 8 H 0.07 1.80 7.85 -52.48 -0.41 1.39 15 9 C 0.09 2.36 5.50 -17.37 -0.10 2.27 15 10 N -0.77 -22.04 11.83 55.55 0.66 -21.38 15 11 Si 0.91 19.64 29.56 -169.99 -5.02 14.61 15 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 13 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 14 H -0.26 -5.54 7.11 56.52 0.40 -5.13 15 15 C 0.31 4.69 7.21 -155.69 -1.12 3.57 15 16 N -0.50 -8.13 10.24 -8.16 -0.08 -8.21 15 17 C 0.14 2.12 7.40 -156.86 -1.16 0.96 15 18 C 0.58 7.69 3.57 36.01 0.13 7.82 15 19 F -0.16 -2.06 17.30 2.25 0.04 -2.02 15 20 F -0.16 -2.07 17.30 2.25 0.04 -2.03 15 21 F -0.15 -2.07 17.16 2.25 0.04 -2.03 15 22 N -0.26 -3.69 12.80 32.42 0.41 -3.27 15 23 N -0.46 -5.66 7.45 32.62 0.24 -5.42 15 24 H 0.45 3.76 8.96 -182.33 -1.63 2.12 15 25 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 28 H 0.40 8.01 7.99 -40.82 -0.33 7.68 15 29 H 0.27 7.03 8.29 -40.82 -0.34 6.69 15 LS Contribution 283.31 15.07 4.27 4.27 Total: -1.00 -32.41 283.31 -5.34 -37.74 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.17 Total: 5.04 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: -2.55 Total: 15.99 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.95 Total: -54.39 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.08 Total: -17.17 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.12 Total: -6.09 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.41 -5.34 -37.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304133237.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.492 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds