Wall clock time and date at job start Tue Mar 31 2020 00:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46911 * 2 1 4 4 N 1.46503 * 109.46957 * 119.99376 * 2 1 3 5 5 C 1.34777 * 120.00385 * 275.00025 * 4 2 1 6 6 O 1.21695 * 119.99724 * 0.02562 * 5 4 2 7 7 C 1.46372 * 120.00523 * 180.02562 * 5 4 2 8 8 H 1.08010 * 119.99400 * 359.97438 * 7 5 4 9 9 C 1.40043 * 120.00377 * 180.02562 * 7 5 4 10 10 N 1.30669 * 120.00077 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 119.99980 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47131 * 89.99971 * 11 9 7 13 13 H 1.48499 * 109.47213 * 209.99557 * 11 9 7 14 14 H 1.48501 * 109.47188 * 329.99938 * 11 9 7 15 15 C 1.50695 * 109.47411 * 239.99394 * 2 1 3 16 16 N 1.30834 * 125.96516 * 265.02688 * 15 2 1 17 17 C 1.33233 * 109.82996 * 179.73851 * 16 15 2 18 18 C 1.50702 * 125.52643 * 179.97438 * 17 16 15 19 19 F 1.39899 * 109.47466 * 104.99690 * 18 17 16 20 20 F 1.39900 * 109.47209 * 224.99516 * 18 17 16 21 21 F 1.39900 * 109.47069 * 344.99681 * 18 17 16 22 22 N 1.30708 * 108.95078 * 359.97438 * 17 16 15 23 23 N 1.34429 * 125.95883 * 84.71712 * 15 2 1 24 24 H 0.97003 * 126.82753 * 0.26347 * 23 15 2 25 25 H 1.09002 * 109.47436 * 300.00145 * 1 2 3 26 26 H 1.09000 * 109.47393 * 60.00439 * 1 2 3 27 27 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 28 28 H 0.97006 * 119.99771 * 95.00756 * 4 2 1 29 29 H 0.96996 * 120.00612 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8571 1.1626 2.4119 7 6 2.6354 -0.7078 3.5523 8 1 2.8922 -1.7558 3.5038 9 6 2.7686 -0.0092 4.7587 10 7 2.4574 1.2585 4.8175 11 14 3.3912 -0.8897 6.2840 12 1 4.8712 -0.7844 6.3469 13 1 2.7987 -0.2640 7.4934 14 1 2.9989 -2.3207 6.2243 15 6 2.0323 -0.7105 -1.2303 16 7 2.3750 -1.9710 -1.3036 17 6 2.7661 -2.2618 -2.5436 18 6 3.2353 -3.6124 -3.0199 19 9 2.2300 -4.2119 -3.7860 20 9 4.3863 -3.4578 -3.7999 21 9 3.5253 -4.4212 -1.9159 22 7 2.6768 -1.1857 -3.2801 23 7 2.2010 -0.1611 -2.4456 24 1 2.0283 0.7599 -2.6964 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6317 1.1528 29 1 2.5500 1.7425 5.6529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001304133237.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:00 Heat of formation + Delta-G solvation = -126.933767 kcal Electronic energy + Delta-G solvation = -21318.914135 eV Core-core repulsion = 17249.135443 eV Total energy + Delta-G solvation = -4069.778692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.37143 -48.90504 -48.85359 -43.77488 -39.59497 -36.38644 -34.57862 -34.36040 -32.77810 -31.14355 -28.29867 -28.13555 -25.55228 -23.17765 -22.65809 -21.12209 -20.20844 -19.80529 -19.60583 -18.91322 -18.46171 -17.43020 -17.07218 -16.82165 -16.02543 -15.70224 -15.64180 -15.27327 -15.06566 -14.99171 -14.98843 -14.97452 -14.34209 -14.06847 -13.83228 -13.54539 -13.31973 -12.86354 -12.73888 -12.59533 -12.44499 -11.99911 -11.83119 -11.67963 -11.18245 -10.90678 -9.88017 -9.60233 -8.28597 -6.83300 -0.10824 0.72122 1.07775 1.35089 1.43745 1.44182 1.59212 2.15245 2.25809 2.47721 2.50958 3.02023 3.04051 3.09557 3.60428 3.62794 4.07520 4.19721 4.40826 4.53427 4.68996 4.84116 5.22866 5.35470 5.65864 5.89489 6.09899 6.25936 6.42430 6.89704 7.47943 8.46856 8.66643 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.004457 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.595247 B = 6280.145027 C = 7076.381201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.100 0.900 4 N -0.744 5.744 5 C 0.548 3.452 6 O -0.620 6.620 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.034 3.966 10 N -0.816 5.816 11 Si 0.992 3.008 12 H -0.264 1.264 13 H -0.272 1.272 14 H -0.252 1.252 15 C 0.310 3.690 16 N -0.518 5.518 17 C 0.130 3.870 18 C 0.583 3.417 19 F -0.158 7.158 20 F -0.158 7.158 21 F -0.153 7.153 22 N -0.256 5.256 23 N -0.436 5.436 24 H 0.468 0.532 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.400 0.600 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 -6.532 -14.355 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.121 3.879 3 H 0.118 0.882 4 N -0.400 5.400 5 C 0.353 3.647 6 O -0.507 6.507 7 C -0.608 4.608 8 H 0.101 0.899 9 C -0.181 4.181 10 N -0.445 5.445 11 Si 0.812 3.188 12 H -0.189 1.189 13 H -0.197 1.197 14 H -0.175 1.175 15 C 0.031 3.969 16 N -0.247 5.247 17 C -0.155 4.155 18 C 0.526 3.474 19 F -0.139 7.139 20 F -0.139 7.139 21 F -0.135 7.135 22 N -0.089 5.089 23 N -0.158 5.158 24 H 0.320 0.680 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.235 0.765 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.573 -5.797 -14.746 15.855 hybrid contribution 0.271 -0.025 0.509 0.577 sum -0.302 -5.822 -14.237 15.385 Atomic orbital electron populations 1.22121 0.92020 1.03088 1.03399 1.19138 0.95248 0.95194 0.78333 0.88226 1.45843 1.72361 1.13875 1.07931 1.18418 0.77538 0.85983 0.82796 1.90563 1.56813 1.17915 1.85379 1.21385 1.47050 0.98261 0.94059 0.89905 1.26827 0.92801 0.95146 1.03359 1.70137 1.36278 1.10230 1.27871 0.85098 0.78822 0.79259 0.75660 1.18869 1.19692 1.17543 1.24582 0.94005 0.88776 0.89532 1.70165 1.20962 1.14380 1.19174 1.23947 1.05136 0.95808 0.90571 1.16106 0.75307 0.80799 0.75192 1.93268 1.60496 1.84348 1.75816 1.93267 1.49988 1.95588 1.75087 1.93284 1.93214 1.73902 1.53057 1.77924 1.18793 0.95810 1.16339 1.47936 1.48413 1.13354 1.06085 0.68025 0.92480 0.88910 0.91745 0.76504 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.47 71.98 0.68 -3.54 15 2 C 0.23 7.59 3.12 44.24 0.14 7.73 15 3 H 0.10 3.43 7.58 -2.39 -0.02 3.41 15 4 N -0.74 -31.47 5.06 -450.40 -2.28 -33.75 15 5 C 0.55 29.70 7.71 86.36 0.67 30.37 15 6 O -0.62 -37.89 14.68 -4.33 -0.06 -37.95 15 7 C -0.57 -31.34 9.54 24.83 0.24 -31.11 15 8 H 0.08 4.18 7.85 -2.91 -0.02 4.16 15 9 C 0.03 1.86 5.50 85.30 0.47 2.33 15 10 N -0.82 -47.77 11.83 21.83 0.26 -47.51 15 11 Si 0.99 40.07 29.56 68.60 2.03 42.09 15 12 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 13 H -0.27 -10.57 7.11 99.48 0.71 -9.87 15 14 H -0.25 -9.61 7.11 99.48 0.71 -8.90 15 15 C 0.31 8.84 7.21 138.22 1.00 9.84 15 16 N -0.52 -16.22 10.24 -179.74 -1.84 -18.06 15 17 C 0.13 3.69 7.40 138.64 1.03 4.72 15 18 C 0.58 14.67 3.57 71.24 0.25 14.92 15 19 F -0.16 -3.71 17.30 44.97 0.78 -2.94 15 20 F -0.16 -3.78 17.30 44.97 0.78 -3.00 15 21 F -0.15 -4.07 17.16 44.97 0.77 -3.30 15 22 N -0.26 -6.66 12.80 -51.34 -0.66 -7.32 15 23 N -0.44 -9.73 7.45 -50.71 -0.38 -10.11 15 24 H 0.47 6.57 8.96 -213.09 -1.91 4.66 15 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 15 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 15 28 H 0.40 16.16 7.99 -92.70 -0.74 15.42 15 29 H 0.28 14.61 8.29 -92.71 -0.77 13.84 15 Total: -1.00 -70.23 283.31 2.46 -67.77 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -1.40 Total: 18.82 kcal Atomic # 6 Polarization: 30.80 SS G_CDS: 4.47 Total: 35.26 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -4.90 Total: -116.76 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.06 Total: -37.95 kcal Atomic # 9 Polarization: -11.57 SS G_CDS: 2.33 Total: -9.24 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Total: -70.23 2.46 -67.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304133237.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.167 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds