Wall clock time and date at job start Tue Mar 31 2020 00:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00075 * 2 1 4 4 H 1.48497 * 109.47244 * 269.99667 * 3 2 1 5 5 H 1.48505 * 109.47078 * 29.99869 * 3 2 1 6 6 H 1.48502 * 109.47262 * 149.99839 * 3 2 1 7 7 C 1.37881 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99398 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00015 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47282 * 299.99721 * 9 7 2 11 11 O 1.42901 * 109.47193 * 59.99773 * 9 7 2 12 12 C 1.53006 * 109.46919 * 179.97438 * 9 7 2 13 13 N 1.46497 * 109.47065 * 180.02562 * 12 9 7 14 14 C 1.35489 * 127.82800 * 269.95597 * 13 12 9 15 15 O 1.21607 * 126.88770 * 0.07086 * 14 13 12 16 16 O 1.34258 * 106.22461 * 180.02562 * 14 13 12 17 17 N 1.21007 * 110.88402 * 359.71649 * 16 14 13 18 18 C 1.29784 * 111.58113 * 0.47327 * 17 16 14 19 19 C 1.48295 * 126.51565 * 179.79987 * 18 17 16 20 20 N 1.32573 * 119.20627 * 179.70712 * 19 18 17 21 21 C 1.32155 * 120.74206 * 179.97438 * 20 19 18 22 22 C 1.38735 * 119.19241 * 0.02562 * 21 20 19 23 23 C 1.38733 * 118.54561 * 359.97438 * 22 21 20 24 24 N 1.32156 * 119.19060 * 0.02562 * 23 22 21 25 25 H 0.97004 * 119.99987 * 0.02562 * 1 2 3 26 26 H 0.96698 * 113.99783 * 59.99950 * 11 9 7 27 27 H 1.08995 * 109.47380 * 59.99804 * 12 9 7 28 28 H 1.09008 * 109.46810 * 299.99650 * 12 9 7 29 29 H 1.08002 * 120.40230 * 180.27647 * 21 20 19 30 30 H 1.08003 * 120.72645 * 179.97438 * 22 21 20 31 31 H 1.08006 * 120.40123 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2453 -3.6621 0.0005 13 7 1.5128 -4.9308 -0.0001 14 6 1.0976 -5.6511 1.0697 15 8 1.2573 -5.3737 2.2429 16 8 0.4738 -6.7321 0.5749 17 7 0.4765 -6.7155 -0.6351 18 6 1.0873 -5.6676 -1.0968 19 6 1.2871 -5.3203 -2.5246 20 7 1.9314 -4.2039 -2.8347 21 6 2.1269 -3.8652 -4.0971 22 6 1.6483 -4.6936 -5.1018 23 6 0.9786 -5.8539 -4.7416 24 7 0.8172 -6.1336 -3.4601 25 1 -0.4850 0.8401 -0.0004 26 1 0.9223 -2.5299 -1.9975 27 1 2.8719 -3.6044 0.8904 28 1 2.8719 -3.6043 -0.8896 29 1 2.6564 -2.9567 -4.3435 30 1 1.7938 -4.4406 -6.1417 31 1 0.5932 -6.5202 -5.4993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323086149.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:34 Heat of formation + Delta-G solvation = 38.045101 kcal Electronic energy + Delta-G solvation = -21843.700451 eV Core-core repulsion = 18322.932520 eV Total energy + Delta-G solvation = -3520.767931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.00389 -41.15750 -38.22790 -36.89225 -35.21947 -33.99800 -32.79636 -32.21756 -31.08853 -29.18166 -26.21144 -25.64348 -24.74531 -23.20522 -22.17060 -20.92653 -18.46940 -18.13740 -17.70857 -17.41334 -16.58104 -15.93712 -15.79834 -15.24526 -15.07039 -14.73676 -14.40528 -14.11710 -13.88066 -13.62806 -13.45269 -13.00466 -12.48286 -11.91851 -11.51127 -11.22446 -11.08806 -11.01920 -10.92421 -10.86227 -10.24526 -10.21751 -10.01783 -9.45396 -9.15683 -8.73495 -8.67239 -8.11346 -6.11324 -4.31652 0.24329 0.90286 1.95435 2.09607 2.53620 2.98104 3.20522 3.28863 3.31357 3.65092 3.66289 4.10042 4.30949 4.38380 4.63431 4.79906 4.85821 5.02915 5.10966 5.18233 5.57520 5.92672 6.05355 6.11716 6.19480 6.29010 6.57505 6.74072 7.54581 7.69150 7.72537 7.79901 7.99340 8.35530 8.69920 9.26789 9.44971 10.93122 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.007439 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.481807 B = 3763.001483 C = 5178.512072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.571 4.571 8 H 0.061 0.939 9 C 0.223 3.777 10 H 0.060 0.940 11 O -0.562 6.562 12 C 0.100 3.900 13 N -0.516 5.516 14 C 0.556 3.444 15 O -0.479 6.479 16 O -0.001 6.001 17 N -0.301 5.301 18 C 0.290 3.710 19 C 0.402 3.598 20 N -0.483 5.483 21 C 0.160 3.840 22 C -0.217 4.217 23 C 0.153 3.847 24 N -0.484 5.484 25 H 0.262 0.738 26 H 0.346 0.654 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.182 0.818 30 H 0.155 0.845 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -8.872 -12.440 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.609 4.609 8 H 0.079 0.921 9 C 0.164 3.836 10 H 0.078 0.922 11 O -0.366 6.366 12 C -0.018 4.018 13 N -0.252 5.252 14 C 0.307 3.693 15 O -0.359 6.359 16 O -0.048 6.048 17 N -0.035 5.035 18 C 0.020 3.980 19 C 0.135 3.865 20 N -0.199 5.199 21 C -0.006 4.006 22 C -0.239 4.239 23 C -0.013 4.013 24 N -0.199 5.199 25 H 0.072 0.928 26 H 0.192 0.808 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.199 0.801 30 H 0.173 0.827 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.911 -9.771 -10.554 14.904 hybrid contribution 1.308 1.985 -1.049 2.599 sum 5.219 -7.786 -11.603 14.916 Atomic orbital electron populations 1.70089 1.06035 1.26697 1.46202 1.25023 0.94720 0.99247 0.93616 0.86578 0.79954 0.83099 0.78175 1.20499 1.21061 1.19649 1.21387 0.93214 0.90537 1.55761 0.92057 1.19704 0.88244 0.88888 0.86760 0.92187 1.86572 1.38366 1.96135 1.15520 1.23324 0.95959 0.77888 1.04611 1.47166 1.50393 1.23124 1.04521 1.20545 0.81114 0.80801 0.86829 1.91149 1.60679 1.71504 1.12569 1.85569 1.64175 1.40552 1.14462 1.74213 1.19056 1.18759 0.91522 1.21108 0.98520 0.89881 0.88501 1.18810 0.91893 0.87315 0.88468 1.68186 1.14167 1.15349 1.22210 1.23405 0.92341 0.98268 0.86550 1.23118 1.00841 0.97129 1.02853 1.23281 0.91482 0.94457 0.92122 1.68205 1.18330 1.31778 1.01616 0.92799 0.80772 0.88897 0.87385 0.80132 0.82746 0.80624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.80 12.84 55.43 0.71 -24.09 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.57 -14.92 8.76 -34.44 -0.30 -15.22 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.22 5.56 3.10 -27.88 -0.09 5.47 16 10 H 0.06 1.74 8.14 -51.93 -0.42 1.31 16 11 O -0.56 -14.17 11.95 -35.23 -0.42 -14.59 16 12 C 0.10 2.03 5.33 -4.04 -0.02 2.01 16 13 N -0.52 -10.27 2.75 -119.31 -0.33 -10.59 16 14 C 0.56 11.52 9.34 54.34 0.51 12.03 16 15 O -0.48 -10.99 18.00 -18.89 -0.34 -11.33 16 16 O 0.00 -0.01 11.25 -7.59 -0.09 -0.10 16 17 N -0.30 -5.59 12.01 32.11 0.39 -5.21 16 18 C 0.29 5.36 7.71 -153.59 -1.18 4.18 16 19 C 0.40 6.49 7.49 -156.99 -1.18 5.31 16 20 N -0.48 -7.11 5.27 -11.15 -0.06 -7.17 16 21 C 0.16 1.64 11.27 -17.23 -0.19 1.45 16 22 C -0.22 -1.66 10.17 -39.21 -0.40 -2.06 16 23 C 0.15 1.42 11.30 -17.23 -0.19 1.22 16 24 N -0.48 -6.80 10.33 -11.15 -0.12 -6.91 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.35 7.82 6.49 45.56 0.30 8.12 16 27 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 28 H 0.11 1.99 6.37 -51.92 -0.33 1.66 16 29 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 31 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 284.51 15.07 4.29 4.29 Total: -1.00 -33.60 284.51 -5.82 -39.43 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -1.69 Total: 4.47 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: -3.15 Total: 16.49 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.60 Total: -53.97 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.85 Total: -26.02 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.60 -5.82 -39.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323086149.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.471 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds