Wall clock time and date at job start Tue Mar 31 2020 00:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00075 * 2 1 4 4 H 1.48497 * 109.47244 * 269.99667 * 3 2 1 5 5 H 1.48505 * 109.47078 * 29.99869 * 3 2 1 6 6 H 1.48502 * 109.47262 * 149.99839 * 3 2 1 7 7 C 1.37881 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99398 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00015 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47282 * 299.99721 * 9 7 2 11 11 O 1.42901 * 109.47193 * 59.99773 * 9 7 2 12 12 C 1.53006 * 109.46919 * 179.97438 * 9 7 2 13 13 N 1.46497 * 109.47065 * 180.02562 * 12 9 7 14 14 C 1.35489 * 127.82800 * 269.95597 * 13 12 9 15 15 O 1.21607 * 126.88770 * 0.07086 * 14 13 12 16 16 O 1.34258 * 106.22461 * 180.02562 * 14 13 12 17 17 N 1.21007 * 110.88402 * 359.71649 * 16 14 13 18 18 C 1.29784 * 111.58113 * 0.47327 * 17 16 14 19 19 C 1.48295 * 126.51565 * 179.79987 * 18 17 16 20 20 N 1.32573 * 119.20627 * 179.70712 * 19 18 17 21 21 C 1.32155 * 120.74206 * 179.97438 * 20 19 18 22 22 C 1.38735 * 119.19241 * 0.02562 * 21 20 19 23 23 C 1.38733 * 118.54561 * 359.97438 * 22 21 20 24 24 N 1.32156 * 119.19060 * 0.02562 * 23 22 21 25 25 H 0.97004 * 119.99987 * 0.02562 * 1 2 3 26 26 H 0.96698 * 113.99783 * 59.99950 * 11 9 7 27 27 H 1.08995 * 109.47380 * 59.99804 * 12 9 7 28 28 H 1.09008 * 109.46810 * 299.99650 * 12 9 7 29 29 H 1.08002 * 120.40230 * 180.27647 * 21 20 19 30 30 H 1.08003 * 120.72645 * 179.97438 * 22 21 20 31 31 H 1.08006 * 120.40123 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2453 -3.6621 0.0005 13 7 1.5128 -4.9308 -0.0001 14 6 1.0976 -5.6511 1.0697 15 8 1.2573 -5.3737 2.2429 16 8 0.4738 -6.7321 0.5749 17 7 0.4765 -6.7155 -0.6351 18 6 1.0873 -5.6676 -1.0968 19 6 1.2871 -5.3203 -2.5246 20 7 1.9314 -4.2039 -2.8347 21 6 2.1269 -3.8652 -4.0971 22 6 1.6483 -4.6936 -5.1018 23 6 0.9786 -5.8539 -4.7416 24 7 0.8172 -6.1336 -3.4601 25 1 -0.4850 0.8401 -0.0004 26 1 0.9223 -2.5299 -1.9975 27 1 2.8719 -3.6044 0.8904 28 1 2.8719 -3.6043 -0.8896 29 1 2.6564 -2.9567 -4.3435 30 1 1.7938 -4.4406 -6.1417 31 1 0.5932 -6.5202 -5.4993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323086149.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:33 Heat of formation + Delta-G solvation = 14.040819 kcal Electronic energy + Delta-G solvation = -21844.741355 eV Core-core repulsion = 18322.932520 eV Total energy + Delta-G solvation = -3521.808835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.51727 -42.05560 -39.90133 -38.59869 -36.99008 -34.93970 -34.26445 -33.96033 -32.35388 -30.97971 -27.92874 -26.95598 -25.67566 -24.76992 -23.50274 -22.73733 -19.85457 -19.65682 -19.27357 -18.60070 -18.00778 -17.50083 -16.90159 -16.70787 -16.60728 -16.29627 -15.89072 -15.65686 -15.25429 -15.10488 -14.73125 -14.43800 -14.05977 -13.64122 -13.13237 -12.99247 -12.80760 -12.71457 -12.08635 -12.06410 -12.00741 -11.80724 -11.38728 -10.87619 -10.74373 -10.31606 -10.28798 -9.88471 -8.16119 -6.43747 -0.77931 0.13054 0.51173 0.70082 0.92601 1.43223 1.46024 1.56492 1.72965 2.36992 2.43056 2.74626 2.90180 3.11456 3.53958 3.56239 3.69698 3.81934 4.12834 4.19834 4.27919 4.40295 4.53177 4.65075 4.85502 4.87943 5.33681 5.52300 5.64444 5.92896 5.93885 6.14573 6.66956 6.76427 6.91887 7.29966 7.47684 8.89383 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.007439 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.481807 B = 3763.001483 C = 5178.512072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.026 3.974 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.578 4.578 8 H 0.077 0.923 9 C 0.227 3.773 10 H 0.007 0.993 11 O -0.575 6.575 12 C 0.117 3.883 13 N -0.519 5.519 14 C 0.551 3.449 15 O -0.510 6.510 16 O 0.000 6.000 17 N -0.312 5.312 18 C 0.299 3.701 19 C 0.365 3.635 20 N -0.511 5.511 21 C 0.142 3.858 22 C -0.176 4.176 23 C 0.144 3.856 24 N -0.506 5.506 25 H 0.261 0.739 26 H 0.358 0.642 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.210 0.790 30 H 0.207 0.793 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 -8.249 -15.715 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.616 4.616 8 H 0.095 0.905 9 C 0.168 3.832 10 H 0.025 0.975 11 O -0.381 6.381 12 C -0.001 4.001 13 N -0.255 5.255 14 C 0.303 3.697 15 O -0.392 6.392 16 O -0.044 6.044 17 N -0.048 5.048 18 C 0.029 3.971 19 C 0.098 3.902 20 N -0.228 5.228 21 C -0.022 4.022 22 C -0.198 4.198 23 C -0.021 4.021 24 N -0.222 5.222 25 H 0.070 0.930 26 H 0.206 0.794 27 H 0.113 0.887 28 H 0.150 0.850 29 H 0.227 0.773 30 H 0.224 0.776 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.522 -9.173 -13.861 17.515 hybrid contribution 0.791 1.749 -0.265 1.938 sum 6.312 -7.424 -14.127 17.162 Atomic orbital electron populations 1.70255 1.08043 1.27555 1.48016 1.25960 0.95430 1.03240 0.93079 0.85414 0.78521 0.77974 0.78784 1.18935 1.21705 1.18585 1.21782 0.94008 0.91051 1.54766 0.90536 1.19420 0.87927 0.90837 0.85012 0.97498 1.86510 1.39102 1.96308 1.16155 1.23019 0.94670 0.76565 1.05853 1.47101 1.50321 1.22982 1.05053 1.20666 0.81092 0.81218 0.86707 1.91107 1.61957 1.72422 1.13739 1.85563 1.64029 1.39814 1.14952 1.74177 1.20250 1.19421 0.90948 1.21774 0.96847 0.88829 0.89682 1.18518 0.95116 0.89124 0.87460 1.68015 1.14697 1.15156 1.24926 1.24077 0.92729 0.99733 0.85663 1.23660 0.96710 0.94763 1.04652 1.24121 0.91162 0.95819 0.91008 1.68147 1.18724 1.32051 1.03298 0.92975 0.79394 0.88693 0.84966 0.77307 0.77639 0.76540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.30 12.84 21.45 0.28 -53.02 16 2 C 0.03 1.38 5.40 84.66 0.46 1.84 16 3 Si 0.97 41.30 29.54 68.60 2.03 43.33 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.58 -30.17 8.76 25.60 0.22 -29.95 16 8 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.23 11.61 3.10 29.85 0.09 11.70 16 10 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 11 O -0.57 -29.49 11.95 -148.98 -1.78 -31.27 16 12 C 0.12 4.81 5.33 86.38 0.46 5.27 16 13 N -0.52 -21.25 2.75 -762.78 -2.10 -23.35 16 14 C 0.55 23.87 9.34 129.69 1.21 25.08 16 15 O -0.51 -24.52 18.00 19.05 0.34 -24.18 16 16 O 0.00 0.01 11.25 92.56 1.04 1.05 16 17 N -0.31 -11.89 12.01 -54.12 -0.65 -12.54 16 18 C 0.30 11.23 7.71 136.36 1.05 12.28 16 19 C 0.37 11.50 7.49 137.54 1.03 12.53 16 20 N -0.51 -14.23 5.27 -189.20 -1.00 -15.23 16 21 C 0.14 2.42 11.27 84.76 0.96 3.38 16 22 C -0.18 -1.81 10.17 22.51 0.23 -1.59 16 23 C 0.14 2.11 11.30 84.76 0.96 3.07 16 24 N -0.51 -13.37 10.33 -189.20 -1.95 -15.32 16 25 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 26 H 0.36 16.11 6.49 -74.06 -0.48 15.63 16 27 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 28 H 0.13 4.79 6.37 -2.38 -0.02 4.77 16 29 H 0.21 2.16 8.06 -2.91 -0.02 2.13 16 30 H 0.21 0.03 8.06 -2.91 -0.02 0.01 16 31 H 0.22 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -76.72 284.51 3.60 -73.12 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.72 Total: 13.79 kcal Atomic # 6 Polarization: 36.94 SS G_CDS: 6.67 Total: 43.61 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.42 Total: -119.46 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -0.40 Total: -54.40 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -76.72 3.60 -73.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323086149.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.162 kcal (2) G-P(sol) polarization free energy of solvation -76.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds