Wall clock time and date at job start Tue Mar 31 2020 01:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47247 * 162.56564 * 3 2 1 5 5 C 1.37100 * 119.99585 * 263.81526 * 4 3 2 6 6 H 1.07998 * 119.99682 * 142.25481 * 5 4 3 7 7 C 1.38948 * 119.99913 * 322.24965 * 5 4 3 8 8 N 1.31418 * 119.99465 * 157.40093 * 7 5 4 9 9 Si 1.86796 * 120.00363 * 337.40620 * 7 5 4 10 10 H 1.48500 * 109.47496 * 95.70939 * 9 7 5 11 11 H 1.48509 * 109.46893 * 215.71050 * 9 7 5 12 12 H 1.48504 * 109.47113 * 335.70462 * 9 7 5 13 13 C 1.34773 * 120.00209 * 83.53572 * 4 3 2 14 14 O 1.21291 * 120.00253 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99909 * 0.02562 * 13 4 3 16 16 C 1.50699 * 109.47085 * 179.97438 * 15 13 4 17 17 N 1.29022 * 124.91414 * 90.00264 * 16 15 13 18 18 C 1.31788 * 117.12569 * 179.97438 * 17 16 15 19 19 C 1.50700 * 122.74996 * 180.02562 * 18 17 16 20 20 C 1.33637 * 114.50042 * 359.97438 * 18 17 16 21 21 C 1.50699 * 126.04043 * 179.97438 * 20 18 17 22 22 S 1.70977 * 124.91783 * 269.69979 * 16 15 13 23 23 H 4.40637 * 5.51502 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47262 * 42.56076 * 3 2 1 25 25 H 1.09005 * 109.47078 * 282.56448 * 3 2 1 26 26 H 0.97005 * 119.99615 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47422 * 299.99698 * 15 13 4 28 28 H 1.09007 * 109.46911 * 59.99908 * 15 13 4 29 29 H 1.08997 * 109.47648 * 89.96928 * 19 18 17 30 30 H 1.08997 * 109.46881 * 209.97470 * 19 18 17 31 31 H 1.09004 * 109.47303 * 329.97028 * 19 18 17 32 32 H 1.09007 * 109.46716 * 90.00080 * 21 20 18 33 33 H 1.08998 * 109.47485 * 210.00447 * 21 20 18 34 34 H 1.08999 * 109.46724 * 330.00833 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3186 -0.4138 5 6 3.4827 1.5409 -1.7209 6 1 3.2591 2.4898 -2.1856 7 6 4.1242 0.5455 -2.4476 8 7 4.0685 0.5511 -3.7606 9 14 5.0656 -0.8008 -1.5585 10 1 4.1938 -1.9925 -1.3997 11 1 6.2679 -1.1688 -2.3487 12 1 5.4837 -0.3114 -0.2202 13 6 3.2341 2.3141 0.4891 14 8 3.6383 3.4052 0.1466 15 6 2.8450 2.0713 1.9247 16 6 3.0498 3.3341 2.7211 17 7 2.1588 4.2513 2.8932 18 6 2.5034 5.2949 3.6205 19 6 1.5632 6.4384 3.9026 20 6 3.7546 5.2555 4.0884 21 6 4.4152 6.3064 4.9430 22 16 4.4940 3.7555 3.5335 23 1 -1.0502 -0.0002 0.0003 24 1 3.0097 -0.7561 -0.6951 25 1 3.0094 -0.2227 1.0031 26 1 4.5160 -0.1441 -4.2680 27 1 1.7965 1.7774 1.9723 28 1 3.4645 1.2760 2.3395 29 1 1.0055 6.2334 4.8163 30 1 2.1358 7.3577 4.0248 31 1 0.8683 6.5511 3.0704 32 1 4.2429 6.0799 5.9952 33 1 5.4868 6.3157 4.7440 34 1 3.9934 7.2836 4.7079 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326993678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:37 Heat of formation + Delta-G solvation = 74.675527 kcal Electronic energy + Delta-G solvation = -18859.304503 eV Core-core repulsion = 15886.418201 eV Total energy + Delta-G solvation = -2972.886302 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83092 -38.79249 -35.44565 -33.63671 -32.69829 -31.64836 -30.46286 -29.25481 -26.79966 -25.38766 -24.61122 -22.58721 -19.33104 -18.56525 -18.54957 -17.61285 -16.81296 -16.29494 -15.70360 -14.95409 -14.71459 -14.58866 -13.72114 -13.48520 -13.29536 -13.12454 -12.98688 -12.91867 -12.61516 -12.54423 -12.35345 -12.04929 -11.92080 -11.50651 -10.98369 -10.92427 -10.82292 -10.28689 -9.81415 -9.60376 -9.36136 -9.20165 -8.97404 -8.69681 -8.30367 -7.94230 -6.45515 -4.03715 0.92447 1.57774 1.98610 2.95323 2.99736 3.13589 3.14519 3.18168 3.32233 3.61306 4.07872 4.21700 4.52820 4.77567 4.96612 5.02750 5.09603 5.11274 5.36090 5.41938 5.45340 5.49732 5.62121 5.72879 5.76417 5.81650 5.89827 5.96028 6.08981 6.37032 6.46838 7.44451 8.03926 8.06704 8.19973 8.39795 8.86748 9.21598 9.62721 10.66328 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.005200 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.253851 B = 5383.000911 C = 5807.468307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.191 3.809 4 N -0.460 5.460 5 C -0.316 4.316 6 H 0.107 0.893 7 C 0.063 3.937 8 N -0.857 5.857 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.259 1.259 13 C 0.479 3.521 14 O -0.545 6.545 15 C -0.072 4.072 16 C 0.094 3.906 17 N -0.466 5.466 18 C 0.065 3.935 19 C -0.075 4.075 20 C -0.242 4.242 21 C -0.069 4.069 22 S 0.121 5.879 23 H 0.214 0.786 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.275 0.725 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 2.601 17.230 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.182 4.182 3 C 0.068 3.932 4 N -0.182 5.182 5 C -0.443 4.443 6 H 0.124 0.876 7 C -0.144 4.144 8 N -0.492 5.492 9 Si 0.691 3.309 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.183 1.183 13 C 0.265 3.735 14 O -0.425 6.425 15 C -0.115 4.115 16 C -0.185 4.185 17 N -0.180 5.180 18 C -0.067 4.067 19 C -0.134 4.134 20 C -0.363 4.363 21 C -0.128 4.128 22 S 0.378 5.622 23 H 0.231 0.769 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.880 2.525 16.710 16.923 hybrid contribution -0.316 -0.319 0.206 0.494 sum -1.196 2.206 16.916 17.101 Atomic orbital electron populations 1.24758 0.95690 1.00452 1.02042 1.23716 0.94856 1.00265 0.99398 1.18950 0.84126 0.89302 1.00832 1.43627 1.57159 1.08366 1.09046 1.19023 1.37758 1.04020 0.83504 0.87589 1.25351 0.96189 0.97730 0.95120 1.69767 1.39843 1.34038 1.05591 0.87127 0.80787 0.81643 0.81347 1.19862 1.20768 1.18330 1.19830 0.82119 0.86182 0.85350 1.90607 1.48179 1.23688 1.79990 1.20410 1.05108 0.91961 0.94060 1.26078 0.92351 0.99453 1.00635 1.66047 1.34403 1.01459 1.16123 1.20092 0.93378 0.95940 0.97336 1.20321 0.97446 0.93293 1.02385 1.25580 0.98214 1.02092 1.10412 1.20170 0.99918 0.95242 0.97440 1.83752 1.18672 1.14583 1.45231 0.76921 0.88321 0.89617 0.91430 0.86862 0.87880 0.90985 0.90950 0.90690 0.91004 0.91357 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.53 19.25 29.55 0.57 -2.96 16 2 C -0.18 -3.47 12.89 -37.12 -0.48 -3.95 16 3 C 0.19 3.84 4.27 -6.83 -0.03 3.81 16 4 N -0.46 -11.19 2.15 -117.94 -0.25 -11.45 16 5 C -0.32 -8.97 9.35 -14.93 -0.14 -9.11 16 6 H 0.11 3.42 7.91 -52.49 -0.42 3.00 16 7 C 0.06 1.71 5.26 -17.47 -0.09 1.62 16 8 N -0.86 -24.59 13.96 55.50 0.77 -23.82 16 9 Si 0.86 19.57 25.07 -169.99 -4.26 15.31 16 10 H -0.27 -5.68 6.69 56.52 0.38 -5.30 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 13 C 0.48 11.34 7.55 -10.99 -0.08 11.26 16 14 O -0.55 -15.09 15.90 5.55 0.09 -15.00 16 15 C -0.07 -1.30 4.89 -29.04 -0.14 -1.45 16 16 C 0.09 1.73 5.88 -13.46 -0.08 1.65 16 17 N -0.47 -8.83 10.53 -8.06 -0.08 -8.92 16 18 C 0.06 1.03 6.74 -84.22 -0.57 0.46 16 19 C -0.08 -0.89 10.06 36.01 0.36 -0.53 16 20 C -0.24 -3.46 6.59 -35.92 -0.24 -3.70 16 21 C -0.07 -0.68 10.10 36.00 0.36 -0.31 16 22 S 0.12 1.89 23.18 -107.50 -2.49 -0.60 16 23 H 0.21 2.64 7.80 -54.08 -0.42 2.22 16 24 H 0.10 2.07 3.66 -51.93 -0.19 1.88 16 25 H 0.09 1.37 6.71 -51.93 -0.35 1.03 16 26 H 0.28 7.26 8.31 -40.82 -0.34 6.93 16 27 H 0.11 1.94 7.46 -51.93 -0.39 1.55 16 28 H 0.10 1.52 7.42 -51.93 -0.39 1.13 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.69 6.72 -51.93 -0.35 0.34 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.65 6.76 -51.93 -0.35 0.30 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -34.20 309.85 -5.81 -40.01 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -3.70 Total: 3.01 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.55 Total: -3.21 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.44 Total: -44.19 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.09 Total: -15.00 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.26 Total: 15.31 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.49 Total: -0.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.20 -5.81 -40.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326993678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.687 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds