Wall clock time and date at job start Tue Mar 31 2020 01:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47247 * 162.56564 * 3 2 1 5 5 C 1.37100 * 119.99585 * 263.81526 * 4 3 2 6 6 H 1.07998 * 119.99682 * 142.25481 * 5 4 3 7 7 C 1.38948 * 119.99913 * 322.24965 * 5 4 3 8 8 N 1.31418 * 119.99465 * 157.40093 * 7 5 4 9 9 Si 1.86796 * 120.00363 * 337.40620 * 7 5 4 10 10 H 1.48500 * 109.47496 * 95.70939 * 9 7 5 11 11 H 1.48509 * 109.46893 * 215.71050 * 9 7 5 12 12 H 1.48504 * 109.47113 * 335.70462 * 9 7 5 13 13 C 1.34773 * 120.00209 * 83.53572 * 4 3 2 14 14 O 1.21291 * 120.00253 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99909 * 0.02562 * 13 4 3 16 16 C 1.50699 * 109.47085 * 179.97438 * 15 13 4 17 17 N 1.29022 * 124.91414 * 90.00264 * 16 15 13 18 18 C 1.31788 * 117.12569 * 179.97438 * 17 16 15 19 19 C 1.50700 * 122.74996 * 180.02562 * 18 17 16 20 20 C 1.33637 * 114.50042 * 359.97438 * 18 17 16 21 21 C 1.50699 * 126.04043 * 179.97438 * 20 18 17 22 22 S 1.70977 * 124.91783 * 269.69979 * 16 15 13 23 23 H 4.40637 * 5.51502 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47262 * 42.56076 * 3 2 1 25 25 H 1.09005 * 109.47078 * 282.56448 * 3 2 1 26 26 H 0.97005 * 119.99615 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47422 * 299.99698 * 15 13 4 28 28 H 1.09007 * 109.46911 * 59.99908 * 15 13 4 29 29 H 1.08997 * 109.47648 * 89.96928 * 19 18 17 30 30 H 1.08997 * 109.46881 * 209.97470 * 19 18 17 31 31 H 1.09004 * 109.47303 * 329.97028 * 19 18 17 32 32 H 1.09007 * 109.46716 * 90.00080 * 21 20 18 33 33 H 1.08998 * 109.47485 * 210.00447 * 21 20 18 34 34 H 1.08999 * 109.46724 * 330.00833 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3186 -0.4138 5 6 3.4827 1.5409 -1.7209 6 1 3.2591 2.4898 -2.1856 7 6 4.1242 0.5455 -2.4476 8 7 4.0685 0.5511 -3.7606 9 14 5.0656 -0.8008 -1.5585 10 1 4.1938 -1.9925 -1.3997 11 1 6.2679 -1.1688 -2.3487 12 1 5.4837 -0.3114 -0.2202 13 6 3.2341 2.3141 0.4891 14 8 3.6383 3.4052 0.1466 15 6 2.8450 2.0713 1.9247 16 6 3.0498 3.3341 2.7211 17 7 2.1588 4.2513 2.8932 18 6 2.5034 5.2949 3.6205 19 6 1.5632 6.4384 3.9026 20 6 3.7546 5.2555 4.0884 21 6 4.4152 6.3064 4.9430 22 16 4.4940 3.7555 3.5335 23 1 -1.0502 -0.0002 0.0003 24 1 3.0097 -0.7561 -0.6951 25 1 3.0094 -0.2227 1.0031 26 1 4.5160 -0.1441 -4.2680 27 1 1.7965 1.7774 1.9723 28 1 3.4645 1.2760 2.3395 29 1 1.0055 6.2334 4.8163 30 1 2.1358 7.3577 4.0248 31 1 0.8683 6.5511 3.0704 32 1 4.2429 6.0799 5.9952 33 1 5.4868 6.3157 4.7440 34 1 3.9934 7.2836 4.7079 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326993678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:35 Heat of formation + Delta-G solvation = 50.787519 kcal Electronic energy + Delta-G solvation = -18860.340365 eV Core-core repulsion = 15886.418201 eV Total energy + Delta-G solvation = -2973.922164 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.20230 -40.43830 -37.26507 -34.92658 -34.45695 -33.34526 -31.74278 -30.31086 -28.42922 -27.06899 -25.83234 -23.99092 -21.01984 -20.21830 -19.79462 -18.84010 -18.58642 -17.95344 -17.48054 -16.43337 -16.08707 -15.89366 -15.31156 -14.93798 -14.83636 -14.53518 -14.33436 -14.09965 -14.03288 -13.73931 -13.67344 -13.20738 -13.15239 -12.85105 -12.69679 -12.64136 -12.01437 -11.99725 -11.41185 -11.18843 -11.05768 -10.66805 -10.53355 -10.12080 -9.94340 -9.49490 -8.55112 -6.20705 -0.29612 0.40657 0.78092 1.18717 1.30874 1.44838 1.60940 1.77548 1.87094 1.91679 2.16532 2.79388 2.88462 3.11508 3.56116 3.73303 3.95505 4.05802 4.13748 4.18220 4.26217 4.42933 4.46587 4.59393 4.69208 4.80168 4.93527 5.03753 5.04798 5.07923 5.43905 5.46870 5.97724 6.43216 6.70795 6.82602 6.84516 7.16547 7.71318 8.62053 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.005200 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.253851 B = 5383.000911 C = 5807.468307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.236 4.236 3 C 0.188 3.812 4 N -0.469 5.469 5 C -0.338 4.338 6 H 0.039 0.961 7 C 0.015 3.985 8 N -0.906 5.906 9 Si 0.938 3.062 10 H -0.236 1.236 11 H -0.282 1.282 12 H -0.243 1.243 13 C 0.472 3.528 14 O -0.600 6.600 15 C -0.057 4.057 16 C 0.053 3.947 17 N -0.495 5.495 18 C 0.031 3.969 19 C -0.071 4.071 20 C -0.228 4.228 21 C -0.071 4.071 22 S 0.136 5.864 23 H 0.253 0.747 24 H 0.090 0.910 25 H 0.131 0.869 26 H 0.282 0.718 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 1.403 20.619 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.238 4.238 3 C 0.066 3.934 4 N -0.190 5.190 5 C -0.466 4.466 6 H 0.057 0.943 7 C -0.188 4.188 8 N -0.543 5.543 9 Si 0.759 3.241 10 H -0.160 1.160 11 H -0.208 1.208 12 H -0.166 1.166 13 C 0.261 3.739 14 O -0.483 6.483 15 C -0.100 4.100 16 C -0.225 4.225 17 N -0.210 5.210 18 C -0.100 4.100 19 C -0.131 4.131 20 C -0.349 4.349 21 C -0.130 4.130 22 S 0.392 5.608 23 H 0.270 0.730 24 H 0.108 0.892 25 H 0.149 0.851 26 H 0.092 0.908 27 H 0.141 0.859 28 H 0.159 0.841 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.821 1.300 20.115 20.173 hybrid contribution -0.435 0.217 -0.866 0.993 sum -1.256 1.517 19.249 19.349 Atomic orbital electron populations 1.25732 0.96612 0.97530 0.99567 1.23802 0.95371 1.02819 1.01776 1.19102 0.85168 0.86345 1.02751 1.43704 1.57392 1.10358 1.07555 1.18555 1.40028 1.02221 0.85808 0.94325 1.26208 0.96129 1.00748 0.95715 1.69887 1.40844 1.35907 1.07671 0.85979 0.78979 0.78865 0.80265 1.16027 1.20836 1.16559 1.20775 0.80612 0.85051 0.87463 1.90560 1.50391 1.25890 1.81443 1.20316 1.06312 0.93481 0.89937 1.26112 0.93873 1.00008 1.02521 1.66047 1.35758 1.02417 1.16813 1.20698 0.94969 0.96446 0.97868 1.20428 0.97032 0.92960 1.02637 1.26206 0.97539 1.01901 1.09216 1.20402 1.00077 0.94538 0.97934 1.83553 1.17367 1.15535 1.44367 0.73035 0.89233 0.85146 0.90809 0.85858 0.84062 0.89003 0.88439 0.92169 0.88479 0.90545 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.47 19.25 74.32 1.43 -4.04 16 2 C -0.24 -8.70 12.89 31.12 0.40 -8.30 16 3 C 0.19 7.25 4.27 84.57 0.36 7.62 16 4 N -0.47 -23.22 2.15 -645.43 -1.39 -24.61 16 5 C -0.34 -20.32 9.35 84.04 0.79 -19.53 16 6 H 0.04 2.76 7.91 -2.91 -0.02 2.73 16 7 C 0.01 0.83 5.26 84.92 0.45 1.28 16 8 N -0.91 -54.25 13.96 21.66 0.30 -53.95 16 9 Si 0.94 39.99 25.07 68.60 1.72 41.71 16 10 H -0.24 -8.69 6.69 99.48 0.67 -8.03 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.24 -9.62 7.11 99.48 0.71 -8.91 16 13 C 0.47 22.88 7.55 87.66 0.66 23.54 16 14 O -0.60 -34.95 15.90 -3.06 -0.05 -35.00 16 15 C -0.06 -2.04 4.89 29.10 0.14 -1.90 16 16 C 0.05 1.92 5.88 88.52 0.52 2.44 16 17 N -0.50 -18.70 10.53 -179.40 -1.89 -20.59 16 18 C 0.03 0.96 6.74 41.52 0.28 1.24 16 19 C -0.07 -1.57 10.06 71.24 0.72 -0.85 16 20 C -0.23 -6.05 6.59 24.64 0.16 -5.89 16 21 C -0.07 -1.14 10.10 71.24 0.72 -0.43 16 22 S 0.14 4.06 23.18 -56.49 -1.31 2.75 16 23 H 0.25 5.27 7.80 -4.41 -0.03 5.24 16 24 H 0.09 3.57 3.66 -2.39 -0.01 3.56 16 25 H 0.13 3.73 6.71 -2.38 -0.02 3.71 16 26 H 0.28 15.34 8.31 -92.70 -0.77 14.57 16 27 H 0.12 4.07 7.46 -2.39 -0.02 4.05 16 28 H 0.14 3.78 7.42 -2.38 -0.02 3.76 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.10 1.58 6.72 -2.39 -0.02 1.56 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.25 6.76 -2.39 -0.02 1.23 16 Total: -1.00 -82.05 309.85 5.10 -76.96 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.08 Total: 17.54 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 6.63 Total: -4.81 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -2.97 Total: -99.15 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.05 Total: -35.00 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.72 Total: 41.71 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.31 Total: 2.75 kcal Total: -82.05 5.10 -76.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326993678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.743 kcal (2) G-P(sol) polarization free energy of solvation -82.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds