Wall clock time and date at job start Tue Mar 31 2020 00:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.35349 * 126.75364 * 94.71254 * 13 12 11 15 15 N 1.35313 * 106.17218 * 179.85517 * 14 13 12 16 16 C 1.46502 * 125.86779 * 180.12213 * 15 14 13 17 17 C 1.52992 * 109.47465 * 125.32097 * 16 15 14 18 18 F 1.39899 * 109.47190 * 60.00205 * 17 16 15 19 19 F 1.39903 * 109.46854 * 179.97438 * 17 16 15 20 20 F 1.39904 * 109.47240 * 299.99726 * 17 16 15 21 21 N 1.28710 * 108.26491 * 0.41269 * 15 14 13 22 22 N 1.28635 * 110.18134 * 359.73681 * 21 15 14 23 23 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 25 25 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 26 26 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 27 27 H 1.08001 * 126.90852 * 0.02562 * 14 13 12 28 28 H 1.09004 * 109.47088 * 245.32712 * 16 15 14 29 29 H 1.09003 * 109.47096 * 5.31471 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 6 2.6529 -6.7348 1.0848 15 7 3.5040 -7.6745 0.6122 16 6 4.2428 -8.6479 1.4204 17 6 3.9498 -10.0606 0.9115 18 9 4.3481 -10.1666 -0.4254 19 9 4.6558 -10.9899 1.6830 20 9 2.5781 -10.3171 1.0112 21 7 3.5578 -7.5624 -0.6688 22 7 2.7890 -6.6096 -1.0636 23 1 -0.4851 0.8400 -0.0004 24 1 2.9191 -3.6476 0.0027 25 1 0.5889 -4.9739 0.8903 26 1 0.5910 -4.9743 -0.8897 27 1 2.3888 -6.5590 2.1172 28 1 5.3115 -8.4480 1.3429 29 1 3.9325 -8.5652 2.4621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327264487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:24 Heat of formation + Delta-G solvation = -87.376925 kcal Electronic energy + Delta-G solvation = -20832.270055 eV Core-core repulsion = 16764.206676 eV Total energy + Delta-G solvation = -4068.063379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.63379 -48.19455 -48.04688 -43.41915 -37.33318 -35.58104 -33.62541 -32.36840 -30.91710 -30.14648 -27.10241 -25.12615 -24.76041 -22.19043 -21.39825 -19.71968 -19.20530 -19.07712 -18.44239 -17.39835 -16.94529 -16.18982 -15.35779 -15.10996 -15.00045 -14.90356 -14.52238 -14.51853 -14.24197 -14.19266 -14.12646 -13.80530 -13.47207 -12.93307 -12.63298 -12.20560 -11.72588 -11.45378 -11.16975 -11.01124 -10.74764 -10.48265 -10.38836 -10.22645 -9.39400 -8.85187 -7.62722 -7.54670 -6.18825 -4.64150 1.21032 1.63417 2.11377 2.45385 3.05294 3.14988 3.21779 3.24835 3.27494 3.60803 4.01921 4.11945 4.25288 4.31318 4.58558 4.78726 5.03085 5.14004 5.28056 5.79369 5.93566 6.19177 6.33803 6.44219 7.43691 7.89610 8.04279 8.31915 8.36477 9.02455 9.50317 10.58987 10.77076 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.047998 B = 0.003137 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.222103 B = 8922.648837 C = 9107.088013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.580 6.580 11 N -0.762 5.762 12 C 0.215 3.785 13 C -0.011 4.011 14 C -0.028 4.028 15 N -0.313 5.313 16 C 0.079 3.921 17 C 0.448 3.552 18 F -0.161 7.161 19 F -0.172 7.172 20 F -0.175 7.175 21 N -0.079 5.079 22 N -0.238 5.238 23 H 0.268 0.732 24 H 0.381 0.619 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.198 0.802 28 H 0.144 0.856 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.259 -18.363 7.018 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.462 6.462 11 N -0.419 5.419 12 C 0.088 3.912 13 C -0.148 4.148 14 C -0.177 4.177 15 N -0.107 5.107 16 C -0.045 4.045 17 C 0.393 3.607 18 F -0.142 7.142 19 F -0.154 7.154 20 F -0.156 7.156 21 N -0.058 5.058 22 N -0.107 5.107 23 H 0.079 0.921 24 H 0.212 0.788 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.215 0.785 28 H 0.162 0.838 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.763 -18.844 5.714 21.979 hybrid contribution 0.597 0.751 1.065 1.433 sum 10.360 -18.093 6.779 21.924 Atomic orbital electron populations 1.70014 1.07031 1.27300 1.35260 1.25704 0.94629 1.00274 0.92631 0.86366 0.80079 0.81382 0.78874 1.19714 1.20461 1.18981 1.20852 0.93579 0.89242 1.54350 0.91436 1.18221 0.87190 0.82190 0.76333 1.90607 1.14017 1.86652 1.54956 1.46174 1.08650 1.04047 1.82980 1.19104 0.90138 0.79524 1.02418 1.22444 1.02530 1.01338 0.88445 1.23540 0.97503 0.94114 1.02516 1.46865 1.31955 1.24818 1.07092 1.23100 1.01518 0.82708 0.97191 1.20355 0.75023 0.88430 0.76917 1.93318 1.90226 1.96540 1.34136 1.93243 1.78627 1.68332 1.75167 1.93262 1.31396 1.95090 1.95858 1.78496 1.19309 1.16571 0.91383 1.75175 1.05974 1.03622 1.25922 0.92073 0.78760 0.91200 0.91135 0.78464 0.83816 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.86 11.83 55.55 0.66 -22.20 15 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 15 3 Si 0.91 20.02 29.56 -169.99 -5.02 15.00 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.54 -15.24 9.54 -35.64 -0.34 -15.58 15 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 15 9 C 0.56 15.66 7.75 -12.99 -0.10 15.56 15 10 O -0.58 -18.53 15.02 5.20 0.08 -18.45 15 11 N -0.76 -16.92 5.54 -62.90 -0.35 -17.27 15 12 C 0.21 4.07 6.23 -5.20 -0.03 4.04 15 13 C -0.01 -0.17 6.61 -82.78 -0.55 -0.72 15 14 C -0.03 -0.31 11.50 -17.05 -0.20 -0.51 15 15 N -0.31 -3.37 3.36 -61.26 -0.21 -3.58 15 16 C 0.08 0.43 6.46 -4.04 -0.03 0.41 15 17 C 0.45 3.47 3.26 37.15 0.12 3.59 15 18 F -0.16 -1.69 16.27 2.25 0.04 -1.66 15 19 F -0.17 -1.17 17.32 2.25 0.04 -1.13 15 20 F -0.17 -1.70 17.24 2.25 0.04 -1.66 15 21 N -0.08 -1.17 12.04 60.35 0.73 -0.44 15 22 N -0.24 -4.14 12.41 33.29 0.41 -3.73 15 23 H 0.27 7.24 8.29 -40.82 -0.34 6.91 15 24 H 0.38 7.70 8.44 -40.82 -0.34 7.36 15 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.07 1.47 8.14 -51.93 -0.42 1.04 15 27 H 0.20 1.46 8.06 -52.49 -0.42 1.03 15 28 H 0.14 0.44 8.14 -51.93 -0.42 0.02 15 29 H 0.15 0.22 8.07 -51.93 -0.42 -0.20 15 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -37.21 283.91 -2.53 -39.74 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.00 Total: 1.99 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.22 Total: 9.12 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 1.24 Total: -47.22 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.08 Total: -18.45 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.11 Total: -4.46 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -37.21 -2.53 -39.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327264487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.634 kcal (2) G-P(sol) polarization free energy of solvation -37.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds