Wall clock time and date at job start Tue Mar 31 2020 00:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.35349 * 126.75364 * 94.71254 * 13 12 11 15 15 N 1.35313 * 106.17218 * 179.85517 * 14 13 12 16 16 C 1.46502 * 125.86779 * 180.12213 * 15 14 13 17 17 C 1.52992 * 109.47465 * 125.32097 * 16 15 14 18 18 F 1.39899 * 109.47190 * 60.00205 * 17 16 15 19 19 F 1.39903 * 109.46854 * 179.97438 * 17 16 15 20 20 F 1.39904 * 109.47240 * 299.99726 * 17 16 15 21 21 N 1.28710 * 108.26491 * 0.41269 * 15 14 13 22 22 N 1.28635 * 110.18134 * 359.73681 * 21 15 14 23 23 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 25 25 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 26 26 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 27 27 H 1.08001 * 126.90852 * 0.02562 * 14 13 12 28 28 H 1.09004 * 109.47088 * 245.32712 * 16 15 14 29 29 H 1.09003 * 109.47096 * 5.31471 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 6 2.6529 -6.7348 1.0848 15 7 3.5040 -7.6745 0.6122 16 6 4.2428 -8.6479 1.4204 17 6 3.9498 -10.0606 0.9115 18 9 4.3481 -10.1666 -0.4254 19 9 4.6558 -10.9899 1.6830 20 9 2.5781 -10.3171 1.0112 21 7 3.5578 -7.5624 -0.6688 22 7 2.7890 -6.6096 -1.0636 23 1 -0.4851 0.8400 -0.0004 24 1 2.9191 -3.6476 0.0027 25 1 0.5889 -4.9739 0.8903 26 1 0.5910 -4.9743 -0.8897 27 1 2.3888 -6.5590 2.1172 28 1 5.3115 -8.4480 1.3429 29 1 3.9325 -8.5652 2.4621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327264487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:22 Heat of formation + Delta-G solvation = -117.191140 kcal Electronic energy + Delta-G solvation = -20833.562896 eV Core-core repulsion = 16764.206676 eV Total energy + Delta-G solvation = -4069.356220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.26732 -48.80741 -48.74078 -44.44467 -39.35714 -36.58214 -35.28517 -34.44567 -32.28754 -30.94932 -28.94656 -26.83632 -25.48502 -23.13424 -22.53950 -21.66587 -19.91743 -19.72707 -19.48488 -18.89607 -17.88151 -17.45581 -17.04507 -16.18389 -16.09009 -15.90995 -15.67545 -15.57345 -15.17825 -15.16245 -14.90276 -14.86211 -14.62385 -14.35089 -13.82441 -13.46489 -13.39898 -13.07447 -12.76197 -12.66306 -12.57289 -11.99495 -11.95705 -11.38648 -10.90798 -10.52659 -9.80516 -9.48934 -8.26524 -6.82778 0.31550 0.92344 1.24688 1.43394 1.44509 1.52764 1.59682 2.28191 2.48940 2.49703 2.77872 3.02365 3.12505 3.34731 3.58171 3.68167 3.82020 3.94906 4.09367 4.30729 4.66398 4.89154 4.93632 5.34919 5.35715 5.89160 6.18455 6.27658 6.89533 7.29648 7.53350 8.50296 8.69364 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.047998 B = 0.003137 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.222103 B = 8922.648837 C = 9107.088013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.571 4.571 8 H 0.086 0.914 9 C 0.541 3.459 10 O -0.629 6.629 11 N -0.748 5.748 12 C 0.223 3.777 13 C -0.044 4.044 14 C 0.011 3.989 15 N -0.301 5.301 16 C 0.075 3.925 17 C 0.445 3.555 18 F -0.183 7.183 19 F -0.165 7.165 20 F -0.189 7.189 21 N -0.099 5.099 22 N -0.283 5.283 23 H 0.275 0.725 24 H 0.392 0.608 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.246 0.754 28 H 0.175 0.825 29 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.545 -18.410 9.041 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.608 4.608 8 H 0.104 0.896 9 C 0.346 3.654 10 O -0.516 6.516 11 N -0.403 5.403 12 C 0.097 3.903 13 C -0.181 4.181 14 C -0.139 4.139 15 N -0.094 5.094 16 C -0.046 4.046 17 C 0.390 3.610 18 F -0.164 7.164 19 F -0.146 7.146 20 F -0.171 7.171 21 N -0.078 5.078 22 N -0.151 5.151 23 H 0.085 0.915 24 H 0.225 0.775 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.262 0.738 28 H 0.193 0.807 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 12.117 -18.971 7.733 23.802 hybrid contribution -0.076 0.575 0.491 0.760 sum 12.041 -18.396 8.224 23.474 Atomic orbital electron populations 1.70176 1.09445 1.28972 1.36366 1.26953 0.95540 1.04875 0.91259 0.85023 0.78826 0.75182 0.79269 1.19007 1.19629 1.17154 1.21391 0.94665 0.90008 1.54723 0.89610 1.18558 0.86803 0.84026 0.76043 1.90561 1.16042 1.87808 1.57233 1.45809 1.09123 1.04079 1.81314 1.18932 0.90671 0.79389 1.01351 1.21991 1.04037 1.02039 0.90081 1.24046 0.94824 0.91878 1.03175 1.47186 1.31095 1.24829 1.06327 1.23760 1.02895 0.79554 0.98433 1.20694 0.74336 0.89801 0.76144 1.93280 1.90360 1.96742 1.36014 1.93259 1.78329 1.68313 1.74738 1.93237 1.32665 1.95325 1.95846 1.78402 1.19502 1.16330 0.93523 1.75107 1.07345 1.04996 1.27656 0.91521 0.77464 0.90368 0.94153 0.73765 0.80747 0.78071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.92 11.83 21.83 0.26 -49.66 15 2 C 0.03 1.61 5.50 85.30 0.47 2.07 15 3 Si 1.00 40.65 29.56 68.60 2.03 42.67 15 4 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 15 6 H -0.25 -9.33 7.11 99.48 0.71 -8.63 15 7 C -0.57 -32.22 9.54 24.83 0.24 -31.98 15 8 H 0.09 4.35 7.85 -2.91 -0.02 4.33 15 9 C 0.54 31.22 7.75 86.36 0.67 31.89 15 10 O -0.63 -41.81 15.02 -4.30 -0.06 -41.88 15 11 N -0.75 -33.63 5.54 -471.14 -2.61 -36.24 15 12 C 0.22 8.61 6.23 85.63 0.53 9.14 15 13 C -0.04 -1.36 6.61 41.59 0.28 -1.08 15 14 C 0.01 0.22 11.50 83.49 0.96 1.18 15 15 N -0.30 -5.54 3.36 -347.73 -1.17 -6.71 15 16 C 0.08 0.49 6.46 86.38 0.56 1.05 15 17 C 0.45 5.77 3.26 71.98 0.23 6.00 15 18 F -0.18 -3.64 16.27 44.97 0.73 -2.91 15 19 F -0.17 -1.80 17.32 44.97 0.78 -1.02 15 20 F -0.19 -3.33 17.24 44.97 0.78 -2.55 15 21 N -0.10 -2.82 12.04 37.02 0.45 -2.38 15 22 N -0.28 -9.85 12.41 -48.60 -0.60 -10.46 15 23 H 0.27 15.12 8.29 -92.71 -0.77 14.35 15 24 H 0.39 15.75 8.44 -92.71 -0.78 14.97 15 25 H 0.08 2.86 8.14 -2.38 -0.02 2.84 15 26 H 0.04 1.78 8.14 -2.38 -0.02 1.76 15 27 H 0.25 2.23 8.06 -2.91 -0.02 2.20 15 28 H 0.18 0.21 8.14 -2.39 -0.02 0.19 15 29 H 0.20 -0.70 8.07 -2.39 -0.02 -0.72 15 Total: -1.00 -86.17 283.91 4.95 -81.22 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.45 Total: 11.64 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 3.94 Total: 18.28 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.68 Total: -105.45 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.06 Total: -41.88 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 2.29 Total: -6.48 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Total: -86.17 4.95 -81.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327264487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.975 kcal (2) G-P(sol) polarization free energy of solvation -86.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds