Wall clock time and date at job start Tue Mar 31 2020 00:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35229 * 107.86733 * 179.83656 * 11 10 9 13 13 C 1.40425 * 107.86821 * 0.42341 * 12 11 10 14 14 N 1.40076 * 125.98106 * 179.75726 * 13 12 11 15 15 C 1.34778 * 119.99395 * 0.02562 * 14 13 12 16 16 O 1.21574 * 120.00365 * 0.02562 * 15 14 13 17 17 C 1.47819 * 119.99758 * 180.02562 * 15 14 13 18 18 N 1.31576 * 125.60788 * 359.68977 * 17 15 14 19 19 N 1.40418 * 106.82955 * 179.91871 * 18 17 15 20 20 H 0.96997 * 126.74033 * 180.12038 * 19 18 17 21 21 C 1.35145 * 106.52415 * 0.34318 * 19 18 17 22 22 O 1.35425 * 125.91443 * 179.81063 * 21 19 18 23 23 N 1.31046 * 108.17017 * 359.79436 * 21 19 18 24 24 N 1.31239 * 108.04414 * 359.74232 * 13 12 11 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.08000 * 126.06298 * 0.02562 * 11 10 9 29 29 H 1.08003 * 126.06870 * 180.12983 * 12 11 10 30 30 H 0.96990 * 120.00137 * 180.02562 * 14 13 12 31 31 H 0.96700 * 113.99686 * 270.00323 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2625 -5.4440 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9594 -5.4623 -1.3042 15 6 5.5249 -6.6039 -0.8642 16 8 5.0864 -7.1574 0.1254 17 6 6.6782 -7.1829 -1.5850 18 7 7.2360 -6.6818 -2.6662 19 7 8.2913 -7.5401 -3.0144 20 1 8.8959 -7.4409 -3.7663 21 6 8.2961 -8.5343 -2.0990 22 8 9.1554 -9.5806 -2.0671 23 7 7.3256 -8.3104 -1.2474 24 7 3.2287 -3.8132 -0.9445 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 1.5908 -4.7507 1.7300 29 1 3.5581 -6.3463 1.0451 30 1 5.3090 -5.0209 -2.0939 31 1 8.8531 -10.3531 -2.5640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328687045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:20 Heat of formation + Delta-G solvation = 110.020834 kcal Electronic energy + Delta-G solvation = -20036.179008 eV Core-core repulsion = 16550.824930 eV Total energy + Delta-G solvation = -3485.354078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.091 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.74913 -40.78543 -39.27113 -38.17294 -35.02536 -33.73354 -33.20280 -31.53831 -30.58796 -29.43104 -26.62427 -25.11456 -23.34311 -22.83017 -21.47129 -20.47603 -20.03628 -19.54312 -18.09968 -17.30565 -17.20249 -16.85101 -16.36819 -15.46987 -15.28228 -14.65878 -14.42767 -13.96089 -13.86000 -13.77966 -13.22538 -12.49472 -12.30140 -12.12894 -11.87577 -11.18274 -10.89640 -10.82993 -10.81095 -10.55870 -10.28514 -10.22582 -10.15724 -9.86427 -9.01974 -8.58371 -8.26718 -7.59458 -6.58413 -4.32567 0.56310 1.40642 1.66884 2.18088 2.59243 2.97401 3.17385 3.38662 3.40226 3.58972 3.63791 3.70982 3.97071 4.38773 4.42319 5.15185 5.27148 5.34041 5.43582 5.65867 5.90939 6.05370 6.34283 6.41257 6.55020 6.73178 6.76513 7.13338 7.24133 7.44463 7.67385 7.79637 7.97724 8.33469 8.48221 8.60681 9.35586 10.79350 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.033778 B = 0.003224 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.746369 B = 8682.535043 C = 9291.717091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.315 5.315 11 C 0.054 3.946 12 C -0.283 4.283 13 C 0.258 3.742 14 N -0.610 5.610 15 C 0.615 3.385 16 O -0.477 6.477 17 C 0.218 3.782 18 N -0.250 5.250 19 N -0.472 5.472 20 H 0.447 0.553 21 C 0.459 3.541 22 O -0.436 6.436 23 N -0.484 5.484 24 N -0.294 5.294 25 H 0.267 0.733 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.170 0.830 29 H 0.163 0.837 30 H 0.419 0.581 31 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.074 -17.171 -6.754 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.096 5.096 11 C -0.096 4.096 12 C -0.314 4.314 13 C 0.005 3.995 14 N -0.258 5.258 15 C 0.395 3.605 16 O -0.344 6.344 17 C -0.067 4.067 18 N -0.089 5.089 19 N -0.205 5.205 20 H 0.294 0.706 21 C 0.143 3.857 22 O -0.237 6.237 23 N -0.223 5.223 24 N -0.125 5.125 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.188 0.812 29 H 0.181 0.819 30 H 0.256 0.744 31 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 14.437 -14.243 -6.453 21.282 hybrid contribution 0.948 -2.654 -0.749 2.916 sum 15.385 -16.897 -7.202 23.960 Atomic orbital electron populations 1.70854 1.06782 1.30442 1.45926 1.25921 0.96303 1.02810 0.93103 0.83421 0.74808 0.74545 0.76875 1.20538 1.21215 1.21112 1.22109 0.95430 0.90416 1.56755 0.91766 1.19795 0.86273 0.82762 0.98114 1.48840 1.23193 1.19525 1.18075 1.22574 1.00374 0.89966 0.96674 1.21550 1.02181 1.06365 1.01353 1.18933 0.91282 0.94523 0.94777 1.41966 1.29727 1.23756 1.30387 1.16052 0.80574 0.80368 0.83540 1.90806 1.60228 1.59630 1.23708 1.23396 0.97970 0.92346 0.92950 1.78455 0.99827 1.14574 1.16028 1.48516 1.26780 1.19847 1.25366 0.70576 1.21203 0.89658 0.87800 0.87078 1.84897 1.40396 1.23194 1.75223 1.70806 1.07372 1.17179 1.26913 1.77390 1.03340 1.15825 1.15930 0.92262 0.93480 0.94635 0.81230 0.81942 0.74398 0.72212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.65 55.43 0.76 -25.48 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.86 29.90 -169.99 -5.08 19.78 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.61 -17.04 9.24 -34.44 -0.32 -17.36 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.23 5.57 -5.19 -0.03 6.20 16 10 N -0.31 -7.27 3.67 -62.56 -0.23 -7.50 16 11 C 0.05 1.06 11.43 -17.24 -0.20 0.86 16 12 C -0.28 -5.55 9.60 -39.83 -0.38 -5.93 16 13 C 0.26 5.19 8.11 -154.45 -1.25 3.94 16 14 N -0.61 -9.95 5.44 -12.00 -0.07 -10.01 16 15 C 0.62 9.82 7.80 -12.34 -0.10 9.73 16 16 O -0.48 -8.81 14.21 5.30 0.08 -8.73 16 17 C 0.22 2.93 7.94 -156.52 -1.24 1.69 16 18 N -0.25 -2.74 12.45 32.03 0.40 -2.34 16 19 N -0.47 -3.36 7.47 29.39 0.22 -3.14 16 20 H 0.45 1.33 8.96 -182.36 -1.63 -0.30 16 21 C 0.46 3.90 9.54 -89.83 -0.86 3.04 16 22 O -0.44 -2.16 13.63 -17.97 -0.24 -2.41 16 23 N -0.48 -6.23 11.22 -12.62 -0.14 -6.37 16 24 N -0.29 -6.77 12.42 31.43 0.39 -6.38 16 25 H 0.27 7.56 7.22 -40.82 -0.29 7.26 16 26 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 27 H 0.04 0.92 8.00 -51.93 -0.42 0.51 16 28 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 29 H 0.16 3.06 5.91 -52.48 -0.31 2.75 16 30 H 0.42 5.91 8.50 -40.82 -0.35 5.57 16 31 H 0.42 -0.34 9.06 45.56 0.41 0.07 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -36.47 291.54 -6.63 -43.11 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -2.63 Total: 2.38 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -4.47 Total: 2.71 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 1.33 Total: -61.23 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.17 Total: -11.14 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -36.47 -6.63 -43.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328687045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.126 kcal (2) G-P(sol) polarization free energy of solvation -36.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds