Wall clock time and date at job start Tue Mar 31 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35229 * 107.86733 * 179.83656 * 11 10 9 13 13 C 1.40425 * 107.86821 * 0.42341 * 12 11 10 14 14 N 1.40076 * 125.98106 * 179.75726 * 13 12 11 15 15 C 1.34778 * 119.99395 * 0.02562 * 14 13 12 16 16 O 1.21574 * 120.00365 * 0.02562 * 15 14 13 17 17 C 1.47819 * 119.99758 * 180.02562 * 15 14 13 18 18 N 1.31576 * 125.60788 * 359.68977 * 17 15 14 19 19 N 1.40418 * 106.82955 * 179.91871 * 18 17 15 20 20 H 0.96997 * 126.74033 * 180.12038 * 19 18 17 21 21 C 1.35145 * 106.52415 * 0.34318 * 19 18 17 22 22 O 1.35425 * 125.91443 * 179.81063 * 21 19 18 23 23 N 1.31046 * 108.17017 * 359.79436 * 21 19 18 24 24 N 1.31239 * 108.04414 * 359.74232 * 13 12 11 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.08000 * 126.06298 * 0.02562 * 11 10 9 29 29 H 1.08003 * 126.06870 * 180.12983 * 12 11 10 30 30 H 0.96990 * 120.00137 * 180.02562 * 14 13 12 31 31 H 0.96700 * 113.99686 * 270.00323 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2625 -5.4440 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9594 -5.4623 -1.3042 15 6 5.5249 -6.6039 -0.8642 16 8 5.0864 -7.1574 0.1254 17 6 6.6782 -7.1829 -1.5850 18 7 7.2360 -6.6818 -2.6662 19 7 8.2913 -7.5401 -3.0144 20 1 8.8959 -7.4409 -3.7663 21 6 8.2961 -8.5343 -2.0990 22 8 9.1554 -9.5806 -2.0671 23 7 7.3256 -8.3104 -1.2474 24 7 3.2287 -3.8132 -0.9445 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 1.5908 -4.7507 1.7300 29 1 3.5581 -6.3463 1.0451 30 1 5.3090 -5.0209 -2.0939 31 1 8.8531 -10.3531 -2.5640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328687045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:18 Heat of formation + Delta-G solvation = 78.031202 kcal Electronic energy + Delta-G solvation = -20037.566183 eV Core-core repulsion = 16550.824930 eV Total energy + Delta-G solvation = -3486.741253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.56079 -42.33337 -40.61054 -38.70315 -36.56266 -35.63438 -34.01816 -32.97019 -31.81778 -31.04589 -28.38476 -26.44444 -24.91324 -23.90207 -22.79360 -21.95068 -21.10014 -20.52688 -19.24390 -18.88346 -18.43424 -18.09187 -17.48375 -16.86079 -16.60608 -15.98806 -15.77225 -15.57114 -15.20943 -14.98370 -14.54515 -14.17237 -13.95109 -13.73553 -13.22868 -12.73110 -12.61215 -12.15755 -11.94283 -11.87032 -11.68312 -11.61495 -11.33693 -11.03081 -10.99856 -10.67933 -9.89260 -9.27740 -8.76779 -6.54251 -0.32403 0.57836 0.90061 0.93910 1.11368 1.52788 1.59007 1.68567 1.80051 1.89947 2.21391 2.49598 2.62879 3.02858 3.10516 3.51609 3.84810 4.11881 4.47016 4.51338 4.55293 4.64023 4.78147 4.80008 4.98603 5.55465 5.59628 5.70956 5.90450 5.97025 6.27058 6.38280 6.42404 6.49782 6.70591 6.89190 7.21091 8.60396 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.033778 B = 0.003224 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.746369 B = 8682.535043 C = 9291.717091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.018 4.018 3 Si 1.119 2.881 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.623 4.623 8 H 0.046 0.954 9 C 0.259 3.741 10 N -0.340 5.340 11 C 0.062 3.938 12 C -0.288 4.288 13 C 0.266 3.734 14 N -0.604 5.604 15 C 0.621 3.379 16 O -0.505 6.505 17 C 0.202 3.798 18 N -0.249 5.249 19 N -0.446 5.446 20 H 0.467 0.533 21 C 0.478 3.522 22 O -0.430 6.430 23 N -0.525 5.525 24 N -0.336 5.336 25 H 0.261 0.739 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.207 0.793 29 H 0.173 0.827 30 H 0.429 0.571 31 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.978 -18.050 -7.219 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.661 4.661 8 H 0.064 0.936 9 C 0.139 3.861 10 N -0.122 5.122 11 C -0.087 4.087 12 C -0.319 4.319 13 C 0.012 3.988 14 N -0.254 5.254 15 C 0.402 3.598 16 O -0.374 6.374 17 C -0.082 4.082 18 N -0.090 5.090 19 N -0.182 5.182 20 H 0.319 0.681 21 C 0.163 3.837 22 O -0.235 6.235 23 N -0.265 5.265 24 N -0.167 5.167 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.224 0.776 29 H 0.190 0.810 30 H 0.267 0.733 31 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges 16.386 -15.189 -6.970 23.405 hybrid contribution 0.519 -2.596 -0.674 2.732 sum 16.905 -17.785 -7.644 25.701 Atomic orbital electron populations 1.70946 1.07450 1.30236 1.47348 1.27241 0.96430 1.06018 0.92089 0.82889 0.74144 0.71181 0.77803 1.20042 1.19673 1.20071 1.22304 0.94758 0.92152 1.56858 0.93570 1.19468 0.86353 0.82628 0.97622 1.48631 1.23810 1.20197 1.19523 1.23215 1.00420 0.88439 0.96593 1.21753 1.02185 1.06651 1.01321 1.19227 0.91336 0.93544 0.94702 1.41995 1.28845 1.24001 1.30513 1.16346 0.80733 0.79577 0.83106 1.90768 1.61325 1.60293 1.25037 1.22694 0.98138 0.93359 0.94020 1.78368 1.00537 1.15084 1.14997 1.48365 1.25795 1.18642 1.25443 0.68073 1.21037 0.88456 0.88324 0.85919 1.84903 1.39308 1.23437 1.75844 1.70689 1.09180 1.17563 1.29085 1.77306 1.04550 1.17652 1.17227 0.92892 0.92503 0.96310 0.77636 0.81015 0.73264 0.69026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.84 13.65 21.45 0.29 -53.54 16 2 C -0.02 -1.01 5.46 84.65 0.46 -0.54 16 3 Si 1.12 49.67 29.90 68.60 2.05 51.72 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.62 -35.31 9.24 25.60 0.24 -35.07 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.26 13.17 5.57 85.64 0.48 13.65 16 10 N -0.34 -15.84 3.67 -351.85 -1.29 -17.13 16 11 C 0.06 2.38 11.43 83.52 0.95 3.33 16 12 C -0.29 -11.17 9.60 22.11 0.21 -10.96 16 13 C 0.27 10.76 8.11 133.35 1.08 11.84 16 14 N -0.60 -19.63 5.44 -310.13 -1.69 -21.32 16 15 C 0.62 19.67 7.80 86.78 0.68 20.34 16 16 O -0.51 -18.64 14.21 -3.95 -0.06 -18.70 16 17 C 0.20 5.23 7.94 137.16 1.09 6.32 16 18 N -0.25 -5.04 12.45 -52.57 -0.65 -5.69 16 19 N -0.45 -5.12 7.47 -172.41 -1.29 -6.41 16 20 H 0.47 1.20 8.96 -213.12 -1.91 -0.71 16 21 C 0.48 6.88 9.54 180.07 1.72 8.60 16 22 O -0.43 -2.84 13.63 -87.21 -1.19 -4.02 16 23 N -0.52 -12.77 11.22 -307.46 -3.45 -16.22 16 24 N -0.34 -15.74 12.42 -54.48 -0.68 -16.41 16 25 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 26 H 0.06 2.76 7.94 -2.39 -0.02 2.74 16 27 H 0.02 1.02 8.00 -2.39 -0.02 1.00 16 28 H 0.21 6.12 8.06 -2.91 -0.02 6.10 16 29 H 0.17 6.36 5.91 -2.91 -0.02 6.34 16 30 H 0.43 12.03 8.50 -92.72 -0.79 11.24 16 31 H 0.44 -2.37 9.06 -74.06 -0.67 -3.04 16 Total: -1.00 -79.27 291.54 -3.06 -82.33 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.02 Total: 7.89 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 6.91 Total: 17.51 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -8.75 Total: -136.73 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.25 Total: -22.72 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.05 Total: 51.72 kcal Total: -79.27 -3.06 -82.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328687045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.364 kcal (2) G-P(sol) polarization free energy of solvation -79.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds