Wall clock time and date at job start Tue Mar 31 2020 00:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00177 * 2 1 4 4 H 1.48501 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46822 * 300.00359 * 3 2 1 6 6 H 1.48502 * 109.46944 * 60.00206 * 3 2 1 7 7 C 1.37875 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00346 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47114 * 179.97438 * 11 10 9 13 13 N 1.30278 * 126.27964 * 90.00294 * 12 11 10 14 14 N 1.28671 * 109.37302 * 179.73126 * 13 12 11 15 15 C 1.30270 * 109.38412 * 0.44112 * 14 13 12 16 16 C 1.50702 * 126.27862 * 179.82572 * 15 14 13 17 17 C 1.50702 * 109.46875 * 89.69493 * 16 15 14 18 18 C 1.33390 * 125.20683 * 89.99782 * 17 16 15 19 19 C 1.38422 * 114.91870 * 180.02562 * 18 17 16 20 20 C 1.33383 * 114.92604 * 0.02562 * 19 18 17 21 21 S 1.75889 * 109.59330 * 359.97438 * 20 19 18 22 22 O 1.34355 * 126.27962 * 269.99788 * 12 11 10 23 23 H 0.96997 * 119.99854 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47359 * 59.99637 * 9 7 2 25 25 H 1.09005 * 109.47321 * 300.00390 * 9 7 2 26 26 H 1.09005 * 109.46986 * 60.00157 * 10 9 7 27 27 H 1.08993 * 109.47162 * 299.99804 * 10 9 7 28 28 H 1.09000 * 109.47434 * 60.00176 * 11 10 9 29 29 H 1.09005 * 109.47434 * 300.00240 * 11 10 9 30 30 H 1.08995 * 109.47419 * 329.69153 * 16 15 14 31 31 H 1.09000 * 109.46561 * 209.68569 * 16 15 14 32 32 H 1.08000 * 122.53444 * 359.97438 * 18 17 16 33 33 H 1.08006 * 122.53655 * 179.97438 * 19 18 17 34 34 H 1.07996 * 125.20664 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4595 -6.1326 -0.0005 13 7 2.9611 -6.7185 1.0494 14 7 3.7565 -7.6580 0.6747 15 6 3.7965 -7.6972 -0.6268 16 6 4.6097 -8.6491 -1.4657 17 6 3.8007 -9.8896 -1.7446 18 6 2.9933 -10.0618 -2.7923 19 6 2.3513 -11.2873 -2.8386 20 6 2.6368 -12.1100 -1.8284 21 16 3.7760 -11.3315 -0.7376 22 8 2.9753 -6.7370 -1.0839 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8532 -5.0452 -0.8896 29 1 0.8537 -5.0446 0.8903 30 1 5.5185 -8.9210 -0.9289 31 1 4.8739 -8.1684 -2.4076 32 1 2.8507 -9.3023 -3.5467 33 1 1.6700 -11.5565 -3.6323 34 1 2.2313 -13.1027 -1.7002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330085775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:08 Heat of formation + Delta-G solvation = 50.527105 kcal Electronic energy + Delta-G solvation = -17863.615678 eV Core-core repulsion = 14889.682221 eV Total energy + Delta-G solvation = -2973.933456 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -44.08284 -38.29186 -36.00668 -35.25606 -33.77080 -32.43790 -30.16911 -28.03874 -26.63276 -24.16573 -23.87077 -22.38391 -21.94649 -20.37799 -19.57068 -17.85957 -17.12834 -16.76125 -16.29629 -15.84817 -15.28175 -14.71494 -14.32679 -14.16810 -13.63359 -13.45268 -12.99660 -12.84767 -12.50747 -12.26872 -12.10289 -12.00180 -11.75345 -11.61370 -11.05617 -10.96079 -10.90806 -10.78860 -10.57351 -9.85745 -9.70423 -9.31499 -9.12033 -9.02072 -8.77193 -8.39990 -6.04947 -4.07449 0.55593 1.21879 1.35116 1.67250 2.24261 2.50455 2.55612 3.29200 3.36885 3.41202 3.90748 4.30232 4.41045 4.45624 4.72860 4.78049 4.98962 5.18231 5.22764 5.31473 5.37846 5.51234 5.62076 5.64161 5.71396 5.75383 5.91778 6.07409 6.11614 6.47678 6.61933 6.92957 7.58853 7.70214 7.93606 8.35148 8.44413 8.98945 9.57096 11.06435 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.043197 B = 0.002748 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.041750 B =10187.098535 C =10313.787700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.107 4.107 11 C -0.030 4.030 12 C 0.192 3.808 13 N -0.297 5.297 14 N -0.279 5.279 15 C 0.144 3.856 16 C 0.055 3.945 17 C -0.192 4.192 18 C -0.121 4.121 19 C -0.138 4.138 20 C -0.212 4.212 21 S 0.126 5.874 22 O -0.221 6.221 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.022 0.978 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.435 -23.707 -6.437 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.069 4.069 12 C -0.018 4.018 13 N -0.143 5.143 14 N -0.126 5.126 15 C -0.068 4.068 16 C 0.015 3.985 17 C -0.310 4.310 18 C -0.152 4.152 19 C -0.168 4.168 20 C -0.348 4.348 21 S 0.391 5.609 22 O -0.101 6.101 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.237 -24.327 -3.836 25.669 hybrid contribution -0.620 1.575 -2.512 3.029 sum 6.617 -22.753 -6.349 24.531 Atomic orbital electron populations 1.69964 1.06041 1.26630 1.50750 1.25014 0.94869 0.99315 0.95210 0.86524 0.80124 0.83677 0.77625 1.19731 1.20982 1.20928 1.21230 0.93119 0.90868 1.50760 0.92573 1.19111 0.93781 0.90836 0.97723 1.21745 0.99568 0.91701 1.01493 1.20643 0.93320 0.87483 1.05426 1.28643 0.97391 0.96877 0.78883 1.74439 1.09122 1.05231 1.25472 1.74320 1.15087 1.14242 1.08911 1.27486 0.95514 0.92051 0.91779 1.18400 0.94049 0.86605 0.99460 1.24127 1.06719 0.99529 1.00615 1.20238 0.97390 0.98476 0.99100 1.20172 1.02625 0.93806 1.00217 1.25755 1.04921 1.04611 0.99504 1.84472 1.43010 1.07009 1.26423 1.84788 1.47349 1.39210 1.38707 0.92963 0.96170 0.96010 0.92215 0.92770 0.88747 0.87225 0.86188 0.86588 0.83879 0.84038 0.81713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.13 5.14 -26.73 -0.14 -2.27 16 11 C -0.03 -0.50 5.84 -27.88 -0.16 -0.66 16 12 C 0.19 3.26 7.73 -12.94 -0.10 3.16 16 13 N -0.30 -5.45 12.22 32.55 0.40 -5.05 16 14 N -0.28 -4.69 12.22 32.55 0.40 -4.29 16 15 C 0.14 2.02 7.71 -12.94 -0.10 1.92 16 16 C 0.06 0.51 6.34 -29.03 -0.18 0.33 16 17 C -0.19 -1.84 5.75 -36.00 -0.21 -2.05 16 18 C -0.12 -1.08 10.05 -41.21 -0.41 -1.50 16 19 C -0.14 -1.12 10.18 -41.21 -0.42 -1.54 16 20 C -0.21 -1.68 11.23 29.04 0.33 -1.36 16 21 S 0.13 1.16 23.33 -107.50 -2.51 -1.35 16 22 O -0.22 -3.46 10.87 5.40 0.06 -3.40 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -32.38 317.66 -7.29 -39.67 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.19 Total: -4.27 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.95 Total: -16.85 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 1.53 Total: -35.05 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: 0.06 Total: -3.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.38 -7.29 -39.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330085775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.196 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds