Wall clock time and date at job start Tue Mar 31 2020 00:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00177 * 2 1 4 4 H 1.48501 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46822 * 300.00359 * 3 2 1 6 6 H 1.48502 * 109.46944 * 60.00206 * 3 2 1 7 7 C 1.37875 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00346 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47114 * 179.97438 * 11 10 9 13 13 N 1.30278 * 126.27964 * 90.00294 * 12 11 10 14 14 N 1.28671 * 109.37302 * 179.73126 * 13 12 11 15 15 C 1.30270 * 109.38412 * 0.44112 * 14 13 12 16 16 C 1.50702 * 126.27862 * 179.82572 * 15 14 13 17 17 C 1.50702 * 109.46875 * 89.69493 * 16 15 14 18 18 C 1.33390 * 125.20683 * 89.99782 * 17 16 15 19 19 C 1.38422 * 114.91870 * 180.02562 * 18 17 16 20 20 C 1.33383 * 114.92604 * 0.02562 * 19 18 17 21 21 S 1.75889 * 109.59330 * 359.97438 * 20 19 18 22 22 O 1.34355 * 126.27962 * 269.99788 * 12 11 10 23 23 H 0.96997 * 119.99854 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47359 * 59.99637 * 9 7 2 25 25 H 1.09005 * 109.47321 * 300.00390 * 9 7 2 26 26 H 1.09005 * 109.46986 * 60.00157 * 10 9 7 27 27 H 1.08993 * 109.47162 * 299.99804 * 10 9 7 28 28 H 1.09000 * 109.47434 * 60.00176 * 11 10 9 29 29 H 1.09005 * 109.47434 * 300.00240 * 11 10 9 30 30 H 1.08995 * 109.47419 * 329.69153 * 16 15 14 31 31 H 1.09000 * 109.46561 * 209.68569 * 16 15 14 32 32 H 1.08000 * 122.53444 * 359.97438 * 18 17 16 33 33 H 1.08006 * 122.53655 * 179.97438 * 19 18 17 34 34 H 1.07996 * 125.20664 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4595 -6.1326 -0.0005 13 7 2.9611 -6.7185 1.0494 14 7 3.7565 -7.6580 0.6747 15 6 3.7965 -7.6972 -0.6268 16 6 4.6097 -8.6491 -1.4657 17 6 3.8007 -9.8896 -1.7446 18 6 2.9933 -10.0618 -2.7923 19 6 2.3513 -11.2873 -2.8386 20 6 2.6368 -12.1100 -1.8284 21 16 3.7760 -11.3315 -0.7376 22 8 2.9753 -6.7370 -1.0839 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8532 -5.0452 -0.8896 29 1 0.8537 -5.0446 0.8903 30 1 5.5185 -8.9210 -0.9289 31 1 4.8739 -8.1684 -2.4076 32 1 2.8507 -9.3023 -3.5467 33 1 1.6700 -11.5565 -3.6323 34 1 2.2313 -13.1027 -1.7002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330085775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:08 Heat of formation + Delta-G solvation = 28.575718 kcal Electronic energy + Delta-G solvation = -17864.567561 eV Core-core repulsion = 14889.682221 eV Total energy + Delta-G solvation = -2974.885340 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.31828 -38.93606 -37.25925 -36.85418 -35.01910 -34.09168 -31.53490 -29.39169 -27.74016 -25.90113 -24.71486 -23.58755 -23.20160 -22.08253 -20.20959 -18.78232 -18.61116 -18.17730 -17.71652 -16.63303 -16.54672 -16.25111 -15.77518 -15.63805 -14.48489 -14.31715 -14.18059 -13.89443 -13.68441 -13.53934 -13.43857 -13.34388 -12.99153 -12.75889 -12.72236 -12.64627 -12.45333 -12.06721 -11.70203 -11.61520 -11.51097 -11.27072 -10.55450 -10.54727 -9.75215 -9.44875 -8.20367 -6.30339 -0.16135 0.13342 0.63631 1.03496 1.20172 1.26853 1.40411 1.41547 1.53997 1.79511 2.41399 2.80930 3.13677 3.35569 3.61052 3.77079 4.15026 4.16958 4.20592 4.22778 4.28810 4.32534 4.56943 4.67605 4.69277 4.73816 4.89789 4.96163 5.12606 5.13759 5.29416 5.50297 5.50446 5.70966 5.84161 6.23985 6.85560 7.20014 7.38625 8.91425 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.043197 B = 0.002748 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.041750 B =10187.098535 C =10313.787700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.091 4.091 11 C -0.019 4.019 12 C 0.185 3.815 13 N -0.322 5.322 14 N -0.311 5.311 15 C 0.165 3.835 16 C 0.055 3.945 17 C -0.208 4.208 18 C -0.122 4.122 19 C -0.148 4.148 20 C -0.207 4.207 21 S 0.098 5.902 22 O -0.223 6.223 23 H 0.264 0.736 24 H 0.007 0.993 25 H 0.003 0.997 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.174 -24.369 -7.694 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.129 4.129 11 C -0.058 4.058 12 C -0.026 4.026 13 N -0.168 5.168 14 N -0.156 5.156 15 C -0.047 4.047 16 C 0.015 3.985 17 C -0.326 4.326 18 C -0.153 4.153 19 C -0.178 4.178 20 C -0.342 4.342 21 S 0.362 5.638 22 O -0.103 6.103 23 H 0.073 0.927 24 H 0.025 0.975 25 H 0.021 0.979 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.174 0.826 33 H 0.181 0.819 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.991 -25.010 -5.083 26.743 hybrid contribution -0.853 1.668 -2.173 2.869 sum 7.138 -23.343 -7.256 25.465 Atomic orbital electron populations 1.70074 1.07560 1.27748 1.51597 1.25898 0.95769 1.03101 0.94774 0.85456 0.79002 0.79102 0.77846 1.18945 1.20206 1.20432 1.21677 0.93458 0.92470 1.50613 0.92575 1.18992 0.94163 0.91920 0.96051 1.21435 0.98448 0.91927 1.01126 1.20441 0.92977 0.85618 1.06736 1.28468 0.97749 0.97266 0.79108 1.74378 1.09817 1.06013 1.26545 1.74276 1.16120 1.14796 1.10458 1.28465 0.93734 0.90966 0.91549 1.18768 0.93685 0.85781 1.00269 1.24150 1.07787 0.99559 1.01125 1.20542 0.96669 0.99089 0.99000 1.20472 1.02939 0.93532 1.00867 1.26077 1.03959 1.05472 0.98718 1.84573 1.44051 1.07761 1.27400 1.84801 1.47627 1.39556 1.38276 0.92688 0.97493 0.97903 0.93118 0.92529 0.86895 0.86645 0.84545 0.83721 0.82628 0.81944 0.79540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.62 5.14 30.59 0.16 -3.46 16 11 C -0.02 -0.62 5.84 29.85 0.17 -0.45 16 12 C 0.19 6.15 7.73 88.34 0.68 6.84 16 13 N -0.32 -11.76 12.22 -165.50 -2.02 -13.78 16 14 N -0.31 -10.31 12.22 -165.50 -2.02 -12.33 16 15 C 0.17 4.42 7.71 88.34 0.68 5.10 16 16 C 0.05 0.90 6.34 29.10 0.18 1.09 16 17 C -0.21 -3.62 5.75 24.59 0.14 -3.47 16 18 C -0.12 -1.90 10.05 21.22 0.21 -1.69 16 19 C -0.15 -2.05 10.18 21.21 0.22 -1.84 16 20 C -0.21 -2.87 11.23 66.72 0.75 -2.12 16 21 S 0.10 1.68 23.33 -56.49 -1.32 0.37 16 22 O -0.22 -6.65 10.87 -3.60 -0.04 -6.69 16 23 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 24 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 26 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.12 3.59 8.14 -2.38 -0.02 3.57 16 30 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.19 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -69.25 317.66 2.05 -67.20 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.10 Total: 2.57 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 4.04 Total: -28.20 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -3.76 Total: -81.18 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.04 Total: -6.69 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.32 Total: 0.37 kcal Total: -69.25 2.05 -67.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330085775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.774 kcal (2) G-P(sol) polarization free energy of solvation -69.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds