Wall clock time and date at job start Tue Mar 31 2020 00:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38028 * 120.94657 * 166.65948 * 3 2 1 5 5 N 1.36037 * 119.30665 * 179.69778 * 4 3 2 6 6 H 0.97005 * 119.26296 * 180.27529 * 5 4 3 7 7 C 1.34235 * 121.47741 * 0.30345 * 5 4 3 8 8 O 1.21554 * 118.94256 * 179.97438 * 7 5 4 9 9 N 1.34401 * 122.11216 * 359.95711 * 7 5 4 10 10 C 1.46504 * 119.77056 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47277 * 89.99701 * 10 9 7 12 12 O 1.21278 * 120.00369 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99956 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00296 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47263 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00425 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99965 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99798 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99954 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47015 * 90.00082 * 19 17 15 21 21 H 1.48503 * 109.47143 * 209.99744 * 19 17 15 22 22 H 1.48501 * 109.47322 * 329.99937 * 19 17 15 23 23 C 1.34964 * 120.45148 * 0.03571 * 9 7 5 24 24 O 1.21686 * 120.72190 * 179.97438 * 23 9 7 25 25 H 1.08002 * 120.34937 * 359.97438 * 4 3 2 26 26 H 1.09002 * 109.46581 * 209.99384 * 10 9 7 27 27 H 1.08993 * 109.46884 * 329.99212 * 10 9 7 28 28 H 0.97006 * 120.00015 * 359.97438 * 13 11 10 29 29 H 1.08994 * 109.47329 * 300.00265 * 14 13 11 30 30 H 1.09004 * 109.46692 * 60.00079 * 14 13 11 31 31 H 0.97001 * 119.99839 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2772 1.1528 -0.2731 5 7 4.6371 1.1170 -0.2581 6 1 5.1349 1.9280 -0.4462 7 6 5.3055 -0.0157 0.0107 8 8 6.5208 0.0046 0.0114 9 7 4.6740 -1.1713 0.2794 10 6 5.4548 -2.3772 0.5664 11 6 5.7161 -2.4656 2.0479 12 8 5.2924 -1.6058 2.7909 13 7 6.4208 -3.5003 2.5473 14 6 6.6754 -3.5860 3.9874 15 6 7.4773 -4.8273 4.2828 16 1 7.7687 -5.4862 3.4782 17 6 7.8392 -5.1217 5.5803 18 7 7.4840 -4.3197 6.5601 19 14 8.8339 -6.6599 5.9463 20 1 10.2826 -6.3405 5.8778 21 1 8.4997 -7.1536 7.3064 22 1 8.5103 -7.7085 4.9457 23 6 3.3256 -1.2283 0.2863 24 8 2.7488 -2.2721 0.5285 25 1 2.7581 2.0742 -0.4921 26 1 4.8975 -3.2563 0.2427 27 1 6.4036 -2.3314 0.0321 28 1 6.7594 -4.1883 1.9531 29 1 7.2331 -2.7072 4.3108 30 1 5.7265 -3.6312 4.5220 31 1 7.7389 -4.5266 7.4729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332325404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:15 Heat of formation + Delta-G solvation = -72.975651 kcal Electronic energy + Delta-G solvation = -20674.247172 eV Core-core repulsion = 17148.665020 eV Total energy + Delta-G solvation = -3525.582152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.48312 -40.59763 -40.11869 -38.41276 -37.38771 -36.46690 -36.05240 -34.41417 -32.45375 -30.78587 -28.71875 -25.81925 -25.30326 -24.56507 -22.22836 -21.27158 -20.53600 -19.32149 -18.76938 -18.20484 -17.74884 -17.59395 -17.13783 -16.66643 -16.47790 -16.02250 -15.73628 -15.55466 -15.22515 -14.82514 -14.47170 -14.30774 -14.08742 -14.03218 -13.78038 -13.25967 -13.13383 -12.95066 -12.70665 -12.25256 -12.22396 -11.73666 -11.58518 -11.50264 -10.81890 -10.68311 -9.92055 -9.86973 -8.30105 -6.46863 -0.39181 0.62806 0.67866 1.33310 1.43558 1.46112 1.57369 1.59185 1.73370 2.11407 2.30962 2.45220 2.63044 2.74162 3.05129 3.24525 3.73515 3.87904 4.01813 4.10318 4.16262 4.39876 4.72075 5.06740 5.20395 5.34100 5.43049 5.62852 5.81809 5.90322 6.27817 6.49922 6.62439 6.65608 6.78324 7.20413 7.36546 8.82250 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.003794 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.976047 B = 7377.506370 C = 7830.161005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.312 3.688 3 C -0.246 4.246 4 C 0.318 3.682 5 N -0.596 5.596 6 H 0.467 0.533 7 C 0.697 3.303 8 O -0.549 6.549 9 N -0.536 5.536 10 C 0.100 3.900 11 C 0.485 3.515 12 O -0.595 6.595 13 N -0.699 5.699 14 C 0.268 3.732 15 C -0.557 4.557 16 H 0.087 0.913 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.255 1.255 23 C 0.563 3.437 24 O -0.540 6.540 25 H 0.270 0.730 26 H 0.149 0.851 27 H 0.159 0.841 28 H 0.413 0.587 29 H -0.010 1.010 30 H -0.015 1.015 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 13.049 -20.451 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.002 4.002 3 C -0.260 4.260 4 C 0.183 3.817 5 N -0.237 5.237 6 H 0.315 0.685 7 C 0.399 3.601 8 O -0.422 6.422 9 N -0.279 5.279 10 C -0.025 4.025 11 C 0.271 3.729 12 O -0.476 6.476 13 N -0.349 5.349 14 C 0.145 3.855 15 C -0.594 4.594 16 H 0.105 0.895 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.178 1.178 23 C 0.357 3.643 24 O -0.416 6.416 25 H 0.286 0.714 26 H 0.167 0.833 27 H 0.177 0.823 28 H 0.249 0.751 29 H 0.008 0.992 30 H 0.003 0.997 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.000 12.944 -19.568 23.989 hybrid contribution 1.050 -0.901 0.753 1.575 sum -3.950 12.043 -18.815 22.686 Atomic orbital electron populations 1.81296 1.12619 1.07593 1.12375 1.24230 0.90934 0.93213 0.91860 1.16790 0.85955 0.94224 1.28989 1.23633 0.81417 0.98969 0.77687 1.42535 1.06915 1.12255 1.61993 0.68531 1.15930 0.85566 0.80898 0.77741 1.91103 1.11847 1.83878 1.55341 1.45825 1.07885 1.11091 1.63093 1.21667 1.00627 0.88164 0.92083 1.21432 0.78018 0.81713 0.91778 1.90639 1.53407 1.41557 1.62045 1.46068 1.53478 1.25133 1.10260 1.18562 0.94133 0.96255 0.76532 1.21628 1.35254 1.08088 0.94458 0.89488 1.26086 0.97012 1.00916 0.95630 1.70140 1.46620 1.39489 1.00781 0.85134 0.78305 0.77958 0.77682 1.19440 1.21085 1.17844 1.18592 0.80625 0.89588 0.75478 1.90889 1.68974 1.33474 1.48221 0.71428 0.83344 0.82345 0.75109 0.99214 0.99672 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.41 18.54 19.00 0.35 -12.06 16 2 C 0.31 6.73 15.12 88.33 1.34 8.06 16 3 C -0.25 -4.03 5.92 -19.73 -0.12 -4.15 16 4 C 0.32 0.85 11.06 83.99 0.93 1.77 16 5 N -0.60 -3.61 5.21 -323.27 -1.68 -5.30 16 6 H 0.47 -1.03 8.86 -92.70 -0.82 -1.85 16 7 C 0.70 13.84 8.34 179.34 1.50 15.34 16 8 O -0.55 -14.33 16.58 -3.89 -0.06 -14.39 16 9 N -0.54 -13.52 2.05 -781.20 -1.60 -15.12 16 10 C 0.10 2.70 5.57 85.63 0.48 3.18 16 11 C 0.48 19.66 7.89 87.66 0.69 20.35 16 12 O -0.59 -29.65 16.43 -3.02 -0.05 -29.70 16 13 N -0.70 -29.74 5.55 -466.80 -2.59 -32.33 16 14 C 0.27 14.91 5.43 85.63 0.46 15.37 16 15 C -0.56 -30.44 9.28 25.60 0.24 -30.20 16 16 H 0.09 4.26 7.60 -2.91 -0.02 4.23 16 17 C 0.00 0.17 5.46 84.66 0.46 0.64 16 18 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 19 Si 0.99 42.55 29.54 68.60 2.03 44.57 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 23 C 0.56 15.09 7.63 86.56 0.66 15.75 16 24 O -0.54 -19.38 16.35 -4.30 -0.07 -19.45 16 25 H 0.27 -3.07 8.06 -2.91 -0.02 -3.09 16 26 H 0.15 3.47 7.44 -2.39 -0.02 3.45 16 27 H 0.16 3.34 7.35 -2.39 -0.02 3.32 16 28 H 0.41 14.07 8.32 -92.70 -0.77 13.29 16 29 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 31 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -96.25 298.75 2.88 -93.37 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -0.36 Total: 0.76 kcal Atomic # 6 Polarization: 39.47 SS G_CDS: 6.64 Total: 46.11 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -5.24 Total: -121.27 kcal Atomic # 8 Polarization: -63.36 SS G_CDS: -0.18 Total: -63.54 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -96.25 2.88 -93.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332325404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.396 kcal (2) G-P(sol) polarization free energy of solvation -96.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds