Wall clock time and date at job start Tue Mar 31 2020 00:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86795 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47092 * 240.00124 * 3 2 1 5 5 H 1.48503 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46934 * 120.00035 * 3 2 1 7 7 C 1.40051 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00220 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00066 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99976 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00146 * 179.97438 * 9 7 2 12 12 C 1.46494 * 120.00461 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47607 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.47542 * 305.00806 * 13 12 11 15 15 N 1.46499 * 109.47560 * 185.00304 * 13 12 11 16 16 C 1.34432 * 126.82005 * 274.71503 * 15 13 12 17 17 N 1.30839 * 108.07342 * 180.25815 * 16 15 13 18 18 C 1.33236 * 109.82829 * 0.02562 * 17 16 15 19 19 N 1.30707 * 108.95130 * 359.97438 * 18 17 16 20 20 C 1.53004 * 109.46997 * 65.00585 * 13 12 11 21 21 F 1.39896 * 109.47501 * 180.02562 * 20 13 12 22 22 F 1.39906 * 109.46759 * 300.00119 * 20 13 12 23 23 F 1.39903 * 109.47159 * 59.99398 * 20 13 12 24 24 H 0.96998 * 119.99639 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99863 * 0.02562 * 11 9 7 26 26 H 1.09009 * 109.46960 * 60.00430 * 12 11 9 27 27 H 1.09001 * 109.47256 * 300.00914 * 12 11 9 28 28 H 1.08001 * 125.96564 * 0.23475 * 16 15 13 29 29 H 1.08005 * 125.52502 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6962 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6478 -0.0016 12 6 1.2163 -4.9165 -0.0010 13 6 2.2105 -6.0794 -0.0031 14 1 2.8934 -5.9722 -0.8457 15 7 1.4818 -7.3447 -0.1230 16 6 0.9351 -8.0574 0.8772 17 7 0.3807 -9.1237 0.3599 18 6 0.5525 -9.1266 -0.9614 19 7 1.2211 -8.0572 -1.3048 20 6 3.0072 -6.0716 1.3031 21 9 3.9166 -7.1346 1.3011 22 9 3.7031 -4.8633 1.4176 23 9 2.1307 -6.2091 2.3848 24 1 -0.4849 0.8401 0.0004 25 1 2.9188 -3.6478 -0.0020 26 1 0.5887 -4.9740 -0.8904 27 1 0.5906 -4.9744 0.8896 28 1 0.9511 -7.7958 1.9249 29 1 0.1963 -9.8885 -1.6389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335754854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:47 Heat of formation + Delta-G solvation = -86.781266 kcal Electronic energy + Delta-G solvation = -22061.175195 eV Core-core repulsion = 17993.137646 eV Total energy + Delta-G solvation = -4068.037549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.48895 -47.98244 -47.92209 -42.27423 -37.79049 -35.76648 -33.00848 -32.30587 -31.44814 -29.58540 -26.89685 -25.26593 -23.61828 -22.23864 -21.66882 -20.08756 -18.99187 -18.83324 -18.07604 -17.55643 -16.35661 -15.91759 -15.60768 -15.26105 -14.91437 -14.69144 -14.41855 -14.37676 -14.22509 -14.14763 -13.94071 -13.79440 -13.66860 -12.81889 -12.60313 -12.11521 -12.03811 -11.44597 -11.27833 -10.97971 -10.58396 -10.36095 -10.25026 -10.06161 -9.97880 -8.94629 -7.86158 -7.81776 -6.30323 -4.76779 1.32684 1.59097 2.29153 2.78504 3.10702 3.15910 3.17626 3.22753 3.58542 3.84656 4.01339 4.17490 4.36623 4.38242 4.45697 4.58413 4.83506 4.93515 5.53676 5.84200 5.92426 5.99606 6.18728 6.44194 7.33267 7.63206 7.79207 7.82943 8.16239 8.90885 9.27392 10.44190 10.62768 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.004931 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.757429 B = 5676.641648 C = 6232.124525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.556 3.444 10 O -0.576 6.576 11 N -0.768 5.768 12 C 0.123 3.877 13 C 0.110 3.890 14 H 0.152 0.848 15 N -0.379 5.379 16 C 0.259 3.741 17 N -0.538 5.538 18 C 0.203 3.797 19 N -0.304 5.304 20 C 0.454 3.546 21 F -0.176 7.176 22 F -0.150 7.150 23 F -0.172 7.172 24 H 0.271 0.729 25 H 0.386 0.614 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.225 0.775 29 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.505 -13.222 1.429 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.088 0.912 9 C 0.361 3.639 10 O -0.458 6.458 11 N -0.429 5.429 12 C -0.003 4.003 13 C 0.004 3.996 14 H 0.169 0.831 15 N -0.170 5.170 16 C -0.038 4.038 17 N -0.265 5.265 18 C -0.100 4.100 19 N -0.130 5.130 20 C 0.398 3.602 21 F -0.157 7.157 22 F -0.131 7.131 23 F -0.153 7.153 24 H 0.082 0.918 25 H 0.220 0.780 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.241 0.759 29 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.485 -13.135 0.897 14.263 hybrid contribution 1.110 0.865 0.386 1.459 sum 6.595 -12.271 1.282 13.990 Atomic orbital electron populations 1.69998 1.07108 1.27676 1.34583 1.25720 0.94675 1.00411 0.92541 0.86373 0.79787 0.80728 0.79550 1.19187 1.20499 1.19168 1.20793 0.93671 0.88919 1.54401 0.91172 1.18259 0.87222 0.81951 0.76430 1.90624 1.14012 1.86386 1.54785 1.46411 1.09094 1.03644 1.83795 1.21238 0.92725 0.82129 1.04230 1.22723 0.96410 0.83967 0.96547 0.83084 1.50116 1.42653 1.18119 1.06081 1.26593 0.91719 0.88000 0.97458 1.70627 1.25334 1.21675 1.08828 1.26145 0.96075 0.95888 0.91921 1.78165 1.22493 1.08033 1.04313 1.20374 0.78938 0.74615 0.86296 1.93245 1.68708 1.56990 1.96778 1.93235 1.79558 1.44231 1.96081 1.93157 1.68559 1.95264 1.58353 0.91843 0.77964 0.89926 0.91017 0.75889 0.76114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.32 11.83 55.55 0.66 -21.67 15 2 C 0.09 2.35 5.50 -17.37 -0.10 2.25 15 3 Si 0.91 19.51 29.56 -169.99 -5.02 14.49 15 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 7 C -0.54 -14.66 9.54 -35.63 -0.34 -15.00 15 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 15 9 C 0.56 15.07 7.75 -12.99 -0.10 14.97 15 10 O -0.58 -17.97 15.02 5.20 0.08 -17.89 15 11 N -0.77 -15.75 4.94 -61.72 -0.31 -16.06 15 12 C 0.12 2.14 5.33 -4.05 -0.02 2.12 15 13 C 0.11 1.45 3.04 -67.93 -0.21 1.24 15 14 H 0.15 1.75 8.14 -51.93 -0.42 1.33 15 15 N -0.38 -5.08 3.47 -56.11 -0.19 -5.27 15 16 C 0.26 3.28 11.56 -90.65 -1.05 2.23 15 17 N -0.54 -7.13 11.19 -15.83 -0.18 -7.31 15 18 C 0.20 2.43 13.03 -91.82 -1.20 1.23 15 19 N -0.30 -4.22 12.70 29.29 0.37 -3.84 15 20 C 0.45 5.68 2.50 37.16 0.09 5.77 15 21 F -0.18 -2.10 17.23 2.25 0.04 -2.06 15 22 F -0.15 -2.05 14.59 2.25 0.03 -2.02 15 23 F -0.17 -2.15 14.01 2.25 0.03 -2.12 15 24 H 0.27 7.18 8.29 -40.82 -0.34 6.84 15 25 H 0.39 6.88 6.45 -40.82 -0.26 6.62 15 26 H 0.08 1.58 8.14 -51.92 -0.42 1.16 15 27 H 0.07 1.32 7.67 -51.93 -0.40 0.92 15 28 H 0.23 2.30 6.06 -52.49 -0.32 1.98 15 29 H 0.22 1.70 8.06 -52.48 -0.42 1.28 15 LS Contribution 274.76 15.07 4.14 4.14 Total: -1.00 -34.10 274.76 -5.06 -39.15 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -1.79 Total: 5.64 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: -2.91 Total: 14.81 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.35 Total: -54.15 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.08 Total: -17.89 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.10 Total: -6.20 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.10 -5.06 -39.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335754854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.627 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds