Wall clock time and date at job start Tue Mar 31 2020 00:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86795 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47092 * 240.00124 * 3 2 1 5 5 H 1.48503 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46934 * 120.00035 * 3 2 1 7 7 C 1.40051 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00220 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00066 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99976 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00146 * 179.97438 * 9 7 2 12 12 C 1.46494 * 120.00461 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47607 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.47542 * 305.00806 * 13 12 11 15 15 N 1.46499 * 109.47560 * 185.00304 * 13 12 11 16 16 C 1.34432 * 126.82005 * 274.71503 * 15 13 12 17 17 N 1.30839 * 108.07342 * 180.25815 * 16 15 13 18 18 C 1.33236 * 109.82829 * 0.02562 * 17 16 15 19 19 N 1.30707 * 108.95130 * 359.97438 * 18 17 16 20 20 C 1.53004 * 109.46997 * 65.00585 * 13 12 11 21 21 F 1.39896 * 109.47501 * 180.02562 * 20 13 12 22 22 F 1.39906 * 109.46759 * 300.00119 * 20 13 12 23 23 F 1.39903 * 109.47159 * 59.99398 * 20 13 12 24 24 H 0.96998 * 119.99639 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99863 * 0.02562 * 11 9 7 26 26 H 1.09009 * 109.46960 * 60.00430 * 12 11 9 27 27 H 1.09001 * 109.47256 * 300.00914 * 12 11 9 28 28 H 1.08001 * 125.96564 * 0.23475 * 16 15 13 29 29 H 1.08005 * 125.52502 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6962 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6478 -0.0016 12 6 1.2163 -4.9165 -0.0010 13 6 2.2105 -6.0794 -0.0031 14 1 2.8934 -5.9722 -0.8457 15 7 1.4818 -7.3447 -0.1230 16 6 0.9351 -8.0574 0.8772 17 7 0.3807 -9.1237 0.3599 18 6 0.5525 -9.1266 -0.9614 19 7 1.2211 -8.0572 -1.3048 20 6 3.0072 -6.0716 1.3031 21 9 3.9166 -7.1346 1.3011 22 9 3.7031 -4.8633 1.4176 23 9 2.1307 -6.2091 2.3848 24 1 -0.4849 0.8401 0.0004 25 1 2.9188 -3.6478 -0.0020 26 1 0.5887 -4.9740 -0.8904 27 1 0.5906 -4.9744 0.8896 28 1 0.9511 -7.7958 1.9249 29 1 0.1963 -9.8885 -1.6389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335754854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:44 Heat of formation + Delta-G solvation = -110.084715 kcal Electronic energy + Delta-G solvation = -22062.185709 eV Core-core repulsion = 17993.137646 eV Total energy + Delta-G solvation = -4069.048062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.53323 -49.02752 -48.95963 -43.27620 -39.64353 -37.22454 -34.81094 -34.17724 -32.47006 -30.88163 -28.69296 -26.73780 -24.82194 -23.21650 -22.76538 -21.97970 -20.14533 -19.89532 -19.30245 -19.14201 -17.69977 -17.27282 -17.12046 -16.52701 -16.06941 -15.90498 -15.84180 -15.63587 -15.46442 -15.36797 -15.20868 -15.01005 -14.68454 -14.42039 -14.16385 -13.55179 -13.35531 -13.12922 -12.85474 -12.66239 -12.61970 -12.06619 -11.27465 -11.14309 -11.00171 -10.92906 -9.97591 -9.72859 -8.32329 -6.88925 0.31556 0.53398 1.22352 1.42431 1.44811 1.56994 1.82299 2.16614 2.23820 2.43278 2.47518 2.77060 2.95803 3.27191 3.29282 3.39656 3.56319 3.77896 3.92663 4.32254 4.45692 4.95717 5.23931 5.31104 5.47193 5.79182 5.95351 6.18359 6.84436 6.84476 7.38257 8.40577 8.62590 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.004931 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.757429 B = 5676.641648 C = 6232.124525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.253 1.253 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.542 3.458 10 O -0.628 6.628 11 N -0.753 5.753 12 C 0.130 3.870 13 C 0.125 3.875 14 H 0.171 0.829 15 N -0.387 5.387 16 C 0.258 3.742 17 N -0.554 5.554 18 C 0.208 3.792 19 N -0.331 5.331 20 C 0.462 3.538 21 F -0.167 7.167 22 F -0.156 7.156 23 F -0.171 7.171 24 H 0.275 0.725 25 H 0.401 0.599 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.242 0.758 29 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -13.434 1.447 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.178 1.178 7 C -0.604 4.604 8 H 0.110 0.890 9 C 0.347 3.653 10 O -0.514 6.514 11 N -0.413 5.413 12 C 0.004 3.996 13 C 0.018 3.982 14 H 0.188 0.812 15 N -0.178 5.178 16 C -0.038 4.038 17 N -0.280 5.280 18 C -0.094 4.094 19 N -0.156 5.156 20 C 0.406 3.594 21 F -0.148 7.148 22 F -0.137 7.137 23 F -0.153 7.153 24 H 0.085 0.915 25 H 0.238 0.762 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.258 0.742 29 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 7.291 -13.406 0.914 15.287 hybrid contribution 0.528 0.790 0.383 1.024 sum 7.819 -12.616 1.297 14.899 Atomic orbital electron populations 1.70167 1.09525 1.29171 1.36009 1.26967 0.95514 1.04963 0.91175 0.85066 0.78195 0.74670 0.80385 1.17726 1.20144 1.17754 1.21374 0.94945 0.89607 1.54514 0.88979 1.18575 0.86784 0.83878 0.76035 1.90582 1.16179 1.87624 1.57048 1.45911 1.09774 1.03477 1.82152 1.21108 0.93379 0.82336 1.02798 1.22416 0.95393 0.82516 0.97848 0.81213 1.50085 1.43264 1.18064 1.06370 1.27035 0.90934 0.87749 0.98103 1.70682 1.25749 1.22038 1.09552 1.26935 0.94617 0.95844 0.91999 1.78152 1.23784 1.08937 1.04766 1.20129 0.78849 0.74562 0.85822 1.93266 1.68335 1.56506 1.96710 1.93219 1.79674 1.44739 1.96063 1.93162 1.68579 1.95241 1.58291 0.91460 0.76184 0.91837 0.92133 0.74193 0.72514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.87 11.83 21.84 0.26 -48.61 15 2 C 0.03 1.59 5.50 85.31 0.47 2.06 15 3 Si 1.00 39.44 29.56 68.60 2.03 41.47 15 4 H -0.25 -9.39 7.11 99.48 0.71 -8.68 15 5 H -0.28 -10.66 7.11 99.48 0.71 -9.95 15 6 H -0.25 -9.41 7.11 99.48 0.71 -8.71 15 7 C -0.57 -30.74 9.54 24.83 0.24 -30.50 15 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 15 9 C 0.54 29.89 7.75 86.36 0.67 30.56 15 10 O -0.63 -40.57 15.02 -4.29 -0.06 -40.63 15 11 N -0.75 -30.87 4.94 -467.42 -2.31 -33.18 15 12 C 0.13 4.55 5.33 86.38 0.46 5.01 15 13 C 0.12 3.14 3.04 44.99 0.14 3.28 15 14 H 0.17 3.64 8.14 -2.39 -0.02 3.62 15 15 N -0.39 -9.91 3.47 -331.44 -1.15 -11.06 15 16 C 0.26 6.19 11.56 180.36 2.08 8.27 15 17 N -0.55 -13.79 11.19 -204.00 -2.28 -16.07 15 18 C 0.21 4.61 13.03 180.77 2.36 6.97 15 19 N -0.33 -8.72 12.70 -61.25 -0.78 -9.50 15 20 C 0.46 10.84 2.50 71.98 0.18 11.02 15 21 F -0.17 -3.62 17.23 44.97 0.77 -2.85 15 22 F -0.16 -4.01 14.59 44.97 0.66 -3.35 15 23 F -0.17 -4.07 14.01 44.97 0.63 -3.44 15 24 H 0.28 14.94 8.29 -92.71 -0.77 14.17 15 25 H 0.40 13.91 6.45 -92.71 -0.60 13.31 15 26 H 0.06 2.49 8.14 -2.38 -0.02 2.47 15 27 H 0.06 2.26 7.67 -2.39 -0.02 2.24 15 28 H 0.24 4.62 6.06 -2.91 -0.02 4.60 15 29 H 0.26 3.26 8.06 -2.91 -0.02 3.24 15 Total: -1.00 -74.86 274.76 4.99 -69.87 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.63 Total: 20.69 kcal Atomic # 6 Polarization: 30.07 SS G_CDS: 6.59 Total: 36.66 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -6.26 Total: -118.42 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.06 Total: -40.63 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 2.06 Total: -9.64 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -74.86 4.99 -69.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335754854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.214 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds