Wall clock time and date at job start Tue Mar 31 2020 00:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86809 * 119.99652 * 2 1 4 4 H 1.48501 * 109.46900 * 274.97995 * 3 2 1 5 5 H 1.48497 * 109.47211 * 34.98263 * 3 2 1 6 6 H 1.48501 * 109.46747 * 154.98225 * 3 2 1 7 7 C 1.40040 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00284 * 186.15204 * 7 2 1 9 9 C 1.46376 * 120.00024 * 6.14540 * 7 2 1 10 10 O 1.21684 * 120.00244 * 353.94559 * 9 7 2 11 11 N 1.34776 * 119.99974 * 173.93519 * 9 7 2 12 12 C 1.46501 * 120.00228 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47393 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.47280 * 54.99839 * 13 12 11 15 15 N 1.46501 * 109.47359 * 175.00101 * 13 12 11 16 16 C 1.34436 * 126.82308 * 84.99373 * 15 13 12 17 17 N 1.30831 * 108.07693 * 180.02562 * 16 15 13 18 18 C 1.33243 * 109.82857 * 359.97438 * 17 16 15 19 19 N 1.30713 * 108.94475 * 359.97438 * 18 17 16 20 20 C 1.53001 * 109.46717 * 294.99938 * 13 12 11 21 21 F 1.39901 * 109.47233 * 299.99832 * 20 13 12 22 22 F 1.39902 * 109.47235 * 60.00198 * 20 13 12 23 23 F 1.39908 * 109.47004 * 180.02562 * 20 13 12 24 24 H 0.97004 * 120.00193 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00092 * 0.02562 * 11 9 7 26 26 H 1.08994 * 109.47114 * 60.00394 * 12 11 9 27 27 H 1.09004 * 109.47157 * 300.00687 * 12 11 9 28 28 H 1.08001 * 125.95559 * 0.02738 * 16 15 13 29 29 H 1.07994 * 125.52488 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4947 2.6201 0.8027 6 1 3.5869 1.4122 0.5921 7 6 2.0069 -1.2128 0.0005 8 1 3.0823 -1.2154 0.1008 9 6 1.2814 -2.4769 -0.1346 10 8 0.0646 -2.4828 -0.1366 11 7 1.9611 -3.6342 -0.2570 12 6 1.2350 -4.8994 -0.3929 13 6 2.2351 -6.0510 -0.5136 14 1 2.9172 -6.0304 0.3363 15 7 1.5127 -7.3254 -0.5294 16 6 0.9651 -7.9280 -1.5991 17 7 0.4125 -9.0439 -1.1978 18 6 0.5864 -9.1876 0.1154 19 7 1.2555 -8.1608 0.5698 20 6 3.0320 -5.9003 -1.8110 21 9 2.1564 -5.9267 -2.9018 22 9 3.7218 -4.6833 -1.7959 23 9 3.9461 -6.9537 -1.9217 24 1 -0.4850 0.8401 -0.0004 25 1 2.9312 -3.6295 -0.2552 26 1 0.6100 -4.8655 -1.2851 27 1 0.6074 -5.0541 0.4848 28 1 0.9790 -7.5558 -2.6128 29 1 0.2326 -10.0183 0.7080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335754883.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:52 Heat of formation + Delta-G solvation = -86.862454 kcal Electronic energy + Delta-G solvation = -22066.077504 eV Core-core repulsion = 17998.036435 eV Total energy + Delta-G solvation = -4068.041070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.48645 -47.97849 -47.92138 -42.27479 -37.79309 -35.76779 -33.00919 -32.31198 -31.44871 -29.58600 -26.89910 -25.26616 -23.61936 -22.23970 -21.66834 -20.08975 -18.98992 -18.83117 -18.07578 -17.56050 -16.35497 -15.92108 -15.60655 -15.26435 -14.91352 -14.69012 -14.41689 -14.37855 -14.22370 -14.14528 -13.93731 -13.79399 -13.66870 -12.81989 -12.61477 -12.12419 -12.03117 -11.46681 -11.26398 -11.00755 -10.58491 -10.32561 -10.24972 -10.06300 -9.97862 -8.95245 -7.86484 -7.81531 -6.31563 -4.76447 1.32706 1.58970 2.29350 2.78466 3.08685 3.16173 3.19542 3.22924 3.58419 3.84922 4.01208 4.17498 4.36436 4.38270 4.44859 4.58797 4.83291 4.93511 5.52970 5.83880 5.91913 5.99467 6.18683 6.44152 7.33533 7.62994 7.79009 7.82915 8.16865 8.90985 9.27075 10.43598 10.62151 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.004952 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.355851 B = 5653.131576 C = 6213.667425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.556 3.444 10 O -0.576 6.576 11 N -0.768 5.768 12 C 0.123 3.877 13 C 0.110 3.890 14 H 0.152 0.848 15 N -0.379 5.379 16 C 0.259 3.741 17 N -0.538 5.538 18 C 0.203 3.797 19 N -0.304 5.304 20 C 0.454 3.546 21 F -0.172 7.172 22 F -0.150 7.150 23 F -0.176 7.176 24 H 0.270 0.730 25 H 0.386 0.614 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.225 0.775 29 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 -12.985 -2.833 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.089 0.911 9 C 0.361 3.639 10 O -0.458 6.458 11 N -0.429 5.429 12 C -0.003 4.003 13 C 0.004 3.996 14 H 0.169 0.831 15 N -0.170 5.170 16 C -0.038 4.038 17 N -0.265 5.265 18 C -0.100 4.100 19 N -0.130 5.130 20 C 0.398 3.602 21 F -0.153 7.153 22 F -0.131 7.131 23 F -0.157 7.157 24 H 0.081 0.919 25 H 0.221 0.779 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.241 0.759 29 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.561 -12.963 -2.300 14.292 hybrid contribution 1.095 0.913 -0.390 1.478 sum 6.656 -12.050 -2.690 14.027 Atomic orbital electron populations 1.70014 1.07133 1.27564 1.34603 1.25717 0.94648 1.00426 0.92525 0.86309 0.80210 0.81200 0.78782 1.19697 1.20392 1.18783 1.20824 0.94217 0.89097 1.53667 0.91092 1.18273 0.87159 0.81933 0.76493 1.90624 1.14022 1.85980 1.55204 1.46417 1.09138 1.04498 1.82873 1.21241 0.92713 0.82386 1.04001 1.22723 0.96513 0.83666 0.96746 0.83083 1.50116 1.42794 1.17147 1.06918 1.26591 0.91695 0.89645 0.95828 1.70626 1.25336 1.18218 1.12280 1.26146 0.96040 0.97297 0.90545 1.78162 1.22511 1.04231 1.08104 1.20373 0.78933 0.74837 0.86079 1.93156 1.68629 1.95936 1.57622 1.93235 1.79848 1.43693 1.96305 1.93248 1.68440 1.57476 1.96564 0.91910 0.77950 0.91009 0.89933 0.75891 0.76115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.29 11.85 55.55 0.66 -21.63 15 2 C 0.09 2.36 5.49 -17.37 -0.10 2.26 15 3 Si 0.91 19.51 29.56 -169.99 -5.03 14.48 15 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.26 -5.45 7.11 56.52 0.40 -5.04 15 7 C -0.54 -14.66 9.53 -35.63 -0.34 -15.00 15 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 15 9 C 0.56 15.06 7.74 -12.99 -0.10 14.96 15 10 O -0.58 -17.97 15.05 5.20 0.08 -17.89 15 11 N -0.77 -15.73 4.94 -61.72 -0.30 -16.04 15 12 C 0.12 2.14 5.33 -4.04 -0.02 2.11 15 13 C 0.11 1.45 3.04 -67.93 -0.21 1.24 15 14 H 0.15 1.75 8.14 -51.93 -0.42 1.33 15 15 N -0.38 -5.08 3.47 -56.11 -0.19 -5.27 15 16 C 0.26 3.28 11.56 -90.65 -1.05 2.23 15 17 N -0.54 -7.13 11.19 -15.83 -0.18 -7.31 15 18 C 0.20 2.43 13.03 -91.81 -1.20 1.23 15 19 N -0.30 -4.21 12.70 29.29 0.37 -3.84 15 20 C 0.45 5.68 2.51 37.16 0.09 5.77 15 21 F -0.17 -2.16 14.01 2.25 0.03 -2.13 15 22 F -0.15 -2.05 14.59 2.25 0.03 -2.01 15 23 F -0.18 -2.10 17.23 2.25 0.04 -2.06 15 24 H 0.27 7.13 8.29 -40.82 -0.34 6.79 15 25 H 0.39 6.88 6.45 -40.82 -0.26 6.61 15 26 H 0.07 1.32 7.66 -51.93 -0.40 0.92 15 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 28 H 0.23 2.30 6.06 -52.49 -0.32 1.98 15 29 H 0.22 1.70 8.06 -52.49 -0.42 1.27 15 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -34.10 274.82 -5.06 -39.16 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -1.79 Total: 5.58 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: -2.91 Total: 14.81 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.35 Total: -54.08 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.08 Total: -17.89 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.10 Total: -6.20 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.10 -5.06 -39.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335754883.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.703 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds