Wall clock time and date at job start Tue Mar 31 2020 00:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48503 * 109.46972 * 95.29798 * 3 2 1 5 5 H 1.48500 * 109.47268 * 215.29786 * 3 2 1 6 6 H 1.48496 * 109.47395 * 335.30038 * 3 2 1 7 7 C 1.37881 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99922 * 6.66034 * 7 2 1 9 9 C 1.50700 * 120.00175 * 186.66623 * 7 2 1 10 10 H 1.09004 * 109.46976 * 335.46337 * 9 7 2 11 11 O 1.45204 * 109.47018 * 215.46794 * 9 7 2 12 12 C 1.34231 * 117.00134 * 89.99650 * 11 9 7 13 13 O 1.20828 * 119.99945 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99640 * 179.97438 * 12 11 9 15 15 H 1.08996 * 110.73767 * 56.57302 * 14 12 11 16 16 C 1.54986 * 110.82921 * 179.97438 * 14 12 11 17 17 C 1.54278 * 103.74818 * 155.29663 * 16 14 12 18 18 C 1.51448 * 106.85254 * 336.87894 * 17 16 14 19 19 O 1.20758 * 126.34074 * 179.66486 * 18 17 16 20 20 C 1.51846 * 107.31761 * 359.64106 * 18 17 16 21 21 C 1.50691 * 109.47457 * 95.46295 * 9 7 2 22 22 C 1.34512 * 125.79296 * 263.18315 * 21 9 7 23 23 C 1.41382 * 106.84391 * 179.97438 * 22 21 9 24 24 C 1.34516 * 106.84152 * 0.02562 * 23 22 21 25 25 O 1.34307 * 108.41900 * 359.73716 * 24 23 22 26 26 H 0.97004 * 119.99352 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.57315 * 273.86534 * 16 14 12 28 28 H 1.09003 * 110.56839 * 36.73062 * 16 14 12 29 29 H 1.09004 * 109.98142 * 96.22550 * 17 16 14 30 30 H 1.09001 * 109.98276 * 217.52947 * 17 16 14 31 31 H 1.08995 * 110.44330 * 265.05650 * 20 18 17 32 32 H 1.08994 * 110.44493 * 142.52831 * 20 18 17 33 33 H 1.08001 * 126.57847 * 359.96784 * 22 21 9 34 34 H 1.07999 * 126.58059 * 180.02562 * 23 22 21 35 35 H 1.07994 * 125.79215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6087 1.9817 1.3941 5 1 3.4863 1.4750 -0.8090 6 1 1.3953 2.6824 -0.5850 7 6 2.0045 -1.1941 -0.0005 8 1 1.4699 -2.1262 -0.1094 9 6 3.5039 -1.1987 0.1510 10 1 3.9056 -0.2415 -0.1817 11 8 4.0685 -2.2668 -0.6546 12 6 4.4013 -1.9653 -1.9195 13 8 4.2262 -0.8461 -2.3400 14 6 4.9933 -3.0228 -2.8153 15 1 4.3308 -3.8855 -2.8839 16 6 5.2954 -2.4472 -4.2222 17 6 6.4129 -3.3642 -4.7613 18 6 7.0918 -3.9833 -3.5573 19 8 8.0130 -4.7638 -3.5779 20 6 6.4000 -3.4403 -2.3194 21 6 3.8619 -1.4179 1.5982 22 6 4.1612 -0.4556 2.4891 23 6 4.4311 -1.1032 3.7166 24 6 4.2811 -2.4227 3.5022 25 8 3.9311 -2.6071 2.2188 26 1 -0.4849 0.8401 0.0004 27 1 4.4119 -2.5059 -4.8579 28 1 5.6471 -1.4182 -4.1476 29 1 5.9836 -4.1450 -5.3892 30 1 7.1318 -2.7783 -5.3339 31 1 6.9386 -2.5762 -1.9305 32 1 6.3205 -4.2151 -1.5570 33 1 4.1899 0.6078 2.3025 34 1 4.7050 -0.6295 4.6476 35 1 4.4154 -3.2014 4.2383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345548901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:52 Heat of formation + Delta-G solvation = -112.241700 kcal Electronic energy + Delta-G solvation = -21563.437411 eV Core-core repulsion = 18107.400148 eV Total energy + Delta-G solvation = -3456.037264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81252 -40.28884 -39.21172 -36.48954 -35.39960 -33.19842 -32.25684 -30.67872 -29.44616 -27.44125 -26.88033 -23.65607 -22.09537 -21.11274 -19.91007 -19.54586 -19.44869 -17.53883 -17.33690 -16.94113 -16.26422 -16.03822 -15.30410 -15.10497 -14.84645 -14.62304 -14.28187 -13.77546 -13.39918 -13.12258 -12.86489 -12.46266 -12.29536 -12.15044 -11.95289 -11.82581 -11.60035 -11.35658 -11.32073 -10.96946 -10.88258 -10.27410 -10.06271 -9.85220 -9.57753 -9.41784 -9.22568 -8.90156 -7.72277 -6.42939 -4.50680 1.75325 2.43251 2.82650 3.11622 3.17528 3.21287 3.28133 3.42177 3.74318 4.04247 4.16112 4.24489 4.59958 4.89780 4.91829 5.04636 5.11871 5.21949 5.33453 5.52865 5.58349 5.62927 5.67987 5.73931 5.97660 6.00665 6.12727 6.14401 6.44716 6.53730 6.76173 7.04582 7.16600 7.29111 7.31305 7.86607 8.07814 8.45611 8.66744 9.14661 10.67160 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.006181 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.072304 B = 4528.826737 C = 5672.539508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.094 3.906 3 Si 0.857 3.143 4 H -0.265 1.265 5 H -0.246 1.246 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.252 3.748 10 H 0.085 0.915 11 O -0.353 6.353 12 C 0.470 3.530 13 O -0.503 6.503 14 C -0.085 4.085 15 H 0.118 0.882 16 C -0.106 4.106 17 C -0.183 4.183 18 C 0.374 3.626 19 O -0.448 6.448 20 C -0.172 4.172 21 C 0.048 3.952 22 C -0.245 4.245 23 C -0.208 4.208 24 C -0.071 4.071 25 O -0.164 6.164 26 H 0.273 0.727 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 -4.066 -3.128 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.114 4.114 3 Si 0.683 3.317 4 H -0.190 1.190 5 H -0.170 1.170 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.107 0.893 9 C 0.199 3.801 10 H 0.103 0.897 11 O -0.270 6.270 12 C 0.312 3.688 13 O -0.392 6.392 14 C -0.104 4.104 15 H 0.136 0.864 16 C -0.143 4.143 17 C -0.221 4.221 18 C 0.250 3.750 19 O -0.321 6.321 20 C -0.210 4.210 21 C -0.004 4.004 22 C -0.264 4.264 23 C -0.227 4.227 24 C -0.139 4.139 25 O -0.059 6.059 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 11.032 -4.291 -3.363 12.305 hybrid contribution -0.049 1.289 0.451 1.366 sum 10.983 -3.003 -2.912 11.752 Atomic orbital electron populations 1.69865 1.06321 1.28059 1.45923 1.24939 0.94875 0.99124 0.92448 0.87093 0.81609 0.83398 0.79632 1.19003 1.17044 1.20321 1.21000 0.87581 0.96088 1.52188 0.89298 1.19428 0.95015 0.86977 0.78711 0.89743 1.86461 1.72374 1.45019 1.23121 1.22853 0.75329 0.88360 0.82304 1.90638 1.50598 1.23219 1.74703 1.21867 0.96413 0.98059 0.94086 0.86364 1.22289 0.98479 0.99989 0.93581 1.22708 0.99632 1.01031 0.98686 1.24907 0.80224 0.76969 0.92931 1.90423 1.24667 1.28137 1.88876 1.22842 0.95207 1.04007 0.98930 1.23297 0.98631 0.82315 0.96110 1.21325 1.11689 0.99882 0.93514 1.21617 1.08272 0.93817 0.98997 1.23819 1.07010 0.97873 0.85190 1.84096 1.67431 1.32946 1.21444 0.91674 0.89518 0.89096 0.88011 0.87991 0.87241 0.87528 0.84448 0.84254 0.78996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.42 13.96 55.43 0.77 -24.64 16 2 C 0.09 2.63 5.47 -17.82 -0.10 2.54 16 3 Si 0.86 20.69 26.61 -169.99 -4.52 16.16 16 4 H -0.26 -6.08 6.73 56.52 0.38 -5.70 16 5 H -0.25 -5.88 6.37 56.52 0.36 -5.52 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.53 -14.87 9.19 -34.44 -0.32 -15.18 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.25 6.13 2.12 -29.04 -0.06 6.07 16 10 H 0.09 2.09 3.98 -51.93 -0.21 1.88 16 11 O -0.35 -7.71 9.85 -41.75 -0.41 -8.12 16 12 C 0.47 8.97 7.23 36.01 0.26 9.23 16 13 O -0.50 -11.05 14.94 -18.75 -0.28 -11.33 16 14 C -0.08 -1.11 3.43 -89.73 -0.31 -1.42 16 15 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 16 C -0.11 -1.15 5.97 -25.01 -0.15 -1.30 16 17 C -0.18 -1.61 6.69 -26.85 -0.18 -1.79 16 18 C 0.37 4.23 7.88 -28.10 -0.22 4.01 16 19 O -0.45 -6.43 17.99 6.00 0.11 -6.32 16 20 C -0.17 -2.00 6.16 -26.32 -0.16 -2.16 16 21 C 0.05 1.11 6.20 -35.63 -0.22 0.89 16 22 C -0.24 -5.13 10.61 -39.70 -0.42 -5.56 16 23 C -0.21 -3.68 10.91 -39.70 -0.43 -4.11 16 24 C -0.07 -1.23 12.09 29.42 0.36 -0.87 16 25 O -0.16 -3.51 10.65 3.10 0.03 -3.48 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.11 1.25 8.04 -51.93 -0.42 0.84 16 32 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.14 2.79 7.15 -52.49 -0.38 2.41 16 34 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.19 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -33.04 307.93 -5.58 -38.62 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.96 Total: 4.15 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.96 Total: -9.67 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.77 Total: -24.64 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.55 Total: -29.26 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.52 Total: 16.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.04 -5.58 -38.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.622 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds