Wall clock time and date at job start Tue Mar 31 2020 00:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48503 * 109.46972 * 95.29798 * 3 2 1 5 5 H 1.48500 * 109.47268 * 215.29786 * 3 2 1 6 6 H 1.48496 * 109.47395 * 335.30038 * 3 2 1 7 7 C 1.37881 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99922 * 6.66034 * 7 2 1 9 9 C 1.50700 * 120.00175 * 186.66623 * 7 2 1 10 10 H 1.09004 * 109.46976 * 335.46337 * 9 7 2 11 11 O 1.45204 * 109.47018 * 215.46794 * 9 7 2 12 12 C 1.34231 * 117.00134 * 89.99650 * 11 9 7 13 13 O 1.20828 * 119.99945 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99640 * 179.97438 * 12 11 9 15 15 H 1.08996 * 110.73767 * 56.57302 * 14 12 11 16 16 C 1.54986 * 110.82921 * 179.97438 * 14 12 11 17 17 C 1.54278 * 103.74818 * 155.29663 * 16 14 12 18 18 C 1.51448 * 106.85254 * 336.87894 * 17 16 14 19 19 O 1.20758 * 126.34074 * 179.66486 * 18 17 16 20 20 C 1.51846 * 107.31761 * 359.64106 * 18 17 16 21 21 C 1.50691 * 109.47457 * 95.46295 * 9 7 2 22 22 C 1.34512 * 125.79296 * 263.18315 * 21 9 7 23 23 C 1.41382 * 106.84391 * 179.97438 * 22 21 9 24 24 C 1.34516 * 106.84152 * 0.02562 * 23 22 21 25 25 O 1.34307 * 108.41900 * 359.73716 * 24 23 22 26 26 H 0.97004 * 119.99352 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.57315 * 273.86534 * 16 14 12 28 28 H 1.09003 * 110.56839 * 36.73062 * 16 14 12 29 29 H 1.09004 * 109.98142 * 96.22550 * 17 16 14 30 30 H 1.09001 * 109.98276 * 217.52947 * 17 16 14 31 31 H 1.08995 * 110.44330 * 265.05650 * 20 18 17 32 32 H 1.08994 * 110.44493 * 142.52831 * 20 18 17 33 33 H 1.08001 * 126.57847 * 359.96784 * 22 21 9 34 34 H 1.07999 * 126.58059 * 180.02562 * 23 22 21 35 35 H 1.07994 * 125.79215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6087 1.9817 1.3941 5 1 3.4863 1.4750 -0.8090 6 1 1.3953 2.6824 -0.5850 7 6 2.0045 -1.1941 -0.0005 8 1 1.4699 -2.1262 -0.1094 9 6 3.5039 -1.1987 0.1510 10 1 3.9056 -0.2415 -0.1817 11 8 4.0685 -2.2668 -0.6546 12 6 4.4013 -1.9653 -1.9195 13 8 4.2262 -0.8461 -2.3400 14 6 4.9933 -3.0228 -2.8153 15 1 4.3308 -3.8855 -2.8839 16 6 5.2954 -2.4472 -4.2222 17 6 6.4129 -3.3642 -4.7613 18 6 7.0918 -3.9833 -3.5573 19 8 8.0130 -4.7638 -3.5779 20 6 6.4000 -3.4403 -2.3194 21 6 3.8619 -1.4179 1.5982 22 6 4.1612 -0.4556 2.4891 23 6 4.4311 -1.1032 3.7166 24 6 4.2811 -2.4227 3.5022 25 8 3.9311 -2.6071 2.2188 26 1 -0.4849 0.8401 0.0004 27 1 4.4119 -2.5059 -4.8579 28 1 5.6471 -1.4182 -4.1476 29 1 5.9836 -4.1450 -5.3892 30 1 7.1318 -2.7783 -5.3339 31 1 6.9386 -2.5762 -1.9305 32 1 6.3205 -4.2151 -1.5570 33 1 4.1899 0.6078 2.3025 34 1 4.7050 -0.6295 4.6476 35 1 4.4154 -3.2014 4.2383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345548901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:51 Heat of formation + Delta-G solvation = -133.197905 kcal Electronic energy + Delta-G solvation = -21564.346141 eV Core-core repulsion = 18107.400148 eV Total energy + Delta-G solvation = -3456.945993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.36901 -41.63230 -40.44605 -37.90159 -36.76220 -35.21387 -33.86499 -32.38846 -30.43043 -28.80800 -28.32952 -25.32792 -23.48165 -22.61694 -21.39354 -20.94526 -20.44742 -19.54309 -18.76348 -18.52121 -17.51203 -17.31406 -16.94856 -16.59039 -16.17917 -16.09052 -15.55660 -14.99608 -14.88496 -14.59520 -14.26859 -14.08689 -13.86065 -13.66055 -13.30901 -13.26158 -12.88592 -12.81908 -12.53270 -12.35647 -12.12848 -12.02231 -11.76282 -11.43957 -11.30190 -11.01420 -10.75780 -10.57528 -9.29848 -8.56632 -6.69390 0.84149 0.88210 1.20271 1.25125 1.30267 1.35590 1.70274 1.92762 2.13737 2.23636 2.84482 3.10363 3.26828 3.61404 3.74792 4.06782 4.16586 4.19053 4.21611 4.24866 4.28306 4.32618 4.43990 4.69679 4.79811 4.93360 4.97670 5.04425 5.05258 5.13250 5.23516 5.25696 5.61973 5.69837 5.98039 6.33270 6.38711 6.40256 6.83684 7.03085 8.58078 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.006181 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.072304 B = 4528.826737 C = 5672.539508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.243 1.243 5 H -0.247 1.247 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.044 0.956 9 C 0.259 3.741 10 H 0.078 0.922 11 O -0.361 6.361 12 C 0.461 3.539 13 O -0.535 6.535 14 C -0.080 4.080 15 H 0.137 0.863 16 C -0.102 4.102 17 C -0.167 4.167 18 C 0.385 3.615 19 O -0.479 6.479 20 C -0.171 4.171 21 C 0.004 3.996 22 C -0.245 4.245 23 C -0.214 4.214 24 C -0.055 4.055 25 O -0.186 6.186 26 H 0.277 0.723 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.179 0.821 35 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.805 -4.121 -2.628 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.167 1.167 5 H -0.171 1.171 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.063 0.937 9 C 0.205 3.795 10 H 0.096 0.904 11 O -0.278 6.278 12 C 0.306 3.694 13 O -0.425 6.425 14 C -0.099 4.099 15 H 0.154 0.846 16 C -0.140 4.140 17 C -0.204 4.204 18 C 0.263 3.737 19 O -0.354 6.354 20 C -0.208 4.208 21 C -0.047 4.047 22 C -0.264 4.264 23 C -0.233 4.233 24 C -0.122 4.122 25 O -0.082 6.082 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.159 0.841 34 H 0.196 0.804 35 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 12.977 -4.353 -2.864 13.984 hybrid contribution -0.611 1.187 0.371 1.386 sum 12.366 -3.166 -2.493 13.006 Atomic orbital electron populations 1.69974 1.07862 1.29158 1.48028 1.25697 0.95570 1.02487 0.92010 0.86230 0.80239 0.79232 0.80800 1.16682 1.17119 1.19500 1.21073 0.89781 0.94505 1.52690 0.93750 1.19072 0.92670 0.87471 0.80304 0.90433 1.86466 1.72489 1.44244 1.24554 1.24090 0.74335 0.89392 0.81628 1.90609 1.51956 1.25007 1.74888 1.22032 0.97113 0.96789 0.93985 0.84551 1.22315 0.99739 0.99778 0.92121 1.22650 0.98897 1.01143 0.97712 1.24988 0.79363 0.75951 0.93434 1.90429 1.26133 1.29662 1.89186 1.22843 0.94226 1.04141 0.99626 1.22946 1.02452 0.83571 0.95754 1.21666 1.10239 0.99900 0.94631 1.22048 1.08145 0.93844 0.99225 1.24909 1.03839 0.99487 0.83926 1.84055 1.68023 1.32647 1.23442 0.91304 0.88463 0.90203 0.85567 0.85880 0.87211 0.87355 0.84133 0.80388 0.73943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.57 13.96 21.45 0.30 -55.27 16 2 C 0.05 2.64 5.47 84.66 0.46 3.10 16 3 Si 0.91 43.28 26.61 68.60 1.83 45.11 16 4 H -0.24 -10.55 6.73 99.48 0.67 -9.88 16 5 H -0.25 -11.62 6.37 99.48 0.63 -10.99 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -31.81 9.19 25.60 0.24 -31.58 16 8 H 0.04 2.89 8.06 -2.91 -0.02 2.87 16 9 C 0.26 12.94 2.12 29.10 0.06 13.00 16 10 H 0.08 3.93 3.98 -2.38 -0.01 3.92 16 11 O -0.36 -16.24 9.85 -49.05 -0.48 -16.72 16 12 C 0.46 17.91 7.23 71.24 0.52 18.42 16 13 O -0.53 -23.95 14.94 21.96 0.33 -23.63 16 14 C -0.08 -2.03 3.43 -10.21 -0.04 -2.07 16 15 H 0.14 2.98 8.14 -2.39 -0.02 2.97 16 16 C -0.10 -2.02 5.97 31.71 0.19 -1.83 16 17 C -0.17 -2.42 6.69 30.52 0.20 -2.22 16 18 C 0.39 7.92 7.88 29.71 0.23 8.15 16 19 O -0.48 -12.97 17.99 -1.44 -0.03 -13.00 16 20 C -0.17 -3.77 6.16 30.86 0.19 -3.58 16 21 C 0.00 0.18 6.20 24.83 0.15 0.33 16 22 C -0.24 -9.94 10.61 22.19 0.24 -9.70 16 23 C -0.21 -6.87 10.91 22.19 0.24 -6.63 16 24 C -0.06 -1.73 12.09 66.97 0.81 -0.92 16 25 O -0.19 -7.82 10.65 -0.13 0.00 -7.82 16 26 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.80 7.42 -2.39 -0.02 1.78 16 29 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 2.44 8.04 -2.39 -0.02 2.42 16 32 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.14 5.48 7.15 -2.91 -0.02 5.46 16 34 H 0.18 4.23 8.06 -2.91 -0.02 4.20 16 35 H 0.24 4.75 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -75.86 307.93 6.45 -69.41 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.00 Total: 17.43 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 3.50 Total: -15.51 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.30 Total: -55.27 kcal Atomic # 8 Polarization: -60.99 SS G_CDS: -0.18 Total: -61.17 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.83 Total: 45.11 kcal Total: -75.86 6.45 -69.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.786 kcal (2) G-P(sol) polarization free energy of solvation -75.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds