Wall clock time and date at job start Tue Mar 31 2020 00:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99985 * 2 1 4 4 H 1.48510 * 109.47157 * 264.73750 * 3 2 1 5 5 H 1.48500 * 109.47077 * 24.73861 * 3 2 1 6 6 H 1.48499 * 109.47442 * 144.73963 * 3 2 1 7 7 C 1.37878 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99637 * 4.42763 * 7 2 1 9 9 C 1.50700 * 120.00144 * 184.42783 * 7 2 1 10 10 H 1.08999 * 109.47196 * 30.39446 * 9 7 2 11 11 O 1.45206 * 109.46925 * 150.39066 * 9 7 2 12 12 C 1.34229 * 116.99969 * 269.99996 * 11 9 7 13 13 O 1.20823 * 119.99943 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99539 * 180.28004 * 12 11 9 15 15 H 1.08990 * 110.74005 * 59.02134 * 14 12 11 16 16 C 1.54983 * 110.82832 * 182.45832 * 14 12 11 17 17 C 1.54283 * 103.75005 * 155.29272 * 16 14 12 18 18 C 1.51448 * 106.84991 * 336.87371 * 17 16 14 19 19 O 1.20759 * 126.33980 * 179.66505 * 18 17 16 20 20 C 1.52067 * 107.41299 * 359.81974 * 18 17 16 21 21 C 1.50696 * 109.47178 * 270.39007 * 9 7 2 22 22 C 1.34524 * 125.78617 * 98.41411 * 21 9 7 23 23 C 1.41378 * 106.83893 * 179.97438 * 22 21 9 24 24 C 1.34522 * 106.84153 * 0.02562 * 23 22 21 25 25 O 1.34301 * 108.41943 * 359.73468 * 24 23 22 26 26 H 0.96999 * 120.00220 * 0.02562 * 1 2 3 27 27 H 1.09006 * 110.57140 * 273.85702 * 16 14 12 28 28 H 1.09003 * 110.57626 * 36.72838 * 16 14 12 29 29 H 1.09000 * 109.98426 * 96.22296 * 17 16 14 30 30 H 1.08999 * 109.98209 * 217.52693 * 17 16 14 31 31 H 1.09001 * 110.34887 * 264.86197 * 20 18 17 32 32 H 1.08998 * 110.63306 * 142.27136 * 20 18 17 33 33 H 1.07996 * 126.57895 * 0.03572 * 22 21 9 34 34 H 1.08004 * 126.58191 * 179.97438 * 23 22 21 35 35 H 1.07999 * 125.78841 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6079 1.9822 -1.3943 5 1 1.3954 2.6822 0.5859 6 1 3.4867 1.4749 0.8082 7 6 2.0046 -1.1940 0.0005 8 1 1.4670 -2.1280 -0.0713 9 6 3.5082 -1.1959 0.1013 10 1 3.8348 -0.3305 0.6778 11 8 3.9474 -2.4117 0.7626 12 6 4.0615 -2.3712 2.0995 13 8 3.8033 -1.3534 2.6972 14 6 4.5181 -3.5931 2.8541 15 1 5.5054 -3.9083 2.5170 16 6 4.5149 -3.3306 4.3815 17 6 4.3642 -4.7381 4.9951 18 6 3.7259 -5.6126 3.9362 19 8 3.4543 -6.7843 4.0441 20 6 3.4928 -4.7450 2.7093 21 6 4.1044 -1.1327 -1.2813 22 6 4.5604 -0.0238 -1.8913 23 6 5.0290 -0.4204 -3.1649 24 6 4.8309 -1.7477 -3.2572 25 8 4.2757 -2.1746 -2.1112 26 1 -0.4850 0.8400 -0.0004 27 1 5.4548 -2.8753 4.6939 28 1 3.6711 -2.6992 4.6600 29 1 5.3434 -5.1339 5.2645 30 1 3.7246 -4.6936 5.8767 31 1 2.4761 -4.3520 2.7106 32 1 3.6821 -5.3108 1.7971 33 1 4.5679 0.9770 -1.4857 34 1 5.4622 0.2197 -3.9193 35 1 5.0808 -2.3660 -4.1067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345548902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:58 Heat of formation + Delta-G solvation = -110.213070 kcal Electronic energy + Delta-G solvation = -21573.557552 eV Core-core repulsion = 18117.608256 eV Total energy + Delta-G solvation = -3455.949296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.83855 -40.25072 -39.17455 -36.46266 -35.39992 -33.21076 -32.28743 -30.69041 -29.40759 -27.40100 -26.85301 -23.64712 -22.10796 -21.15167 -19.91550 -19.49588 -19.43800 -17.66691 -17.23747 -16.87958 -16.26504 -15.97077 -15.29137 -15.16897 -14.75222 -14.61789 -14.28181 -13.72654 -13.43128 -13.07002 -12.88954 -12.43095 -12.39098 -12.13349 -11.96362 -11.73437 -11.65088 -11.42910 -11.22269 -10.88592 -10.85880 -10.27942 -10.02853 -9.90253 -9.51850 -9.43391 -9.22746 -8.91807 -7.73029 -6.41890 -4.49421 1.83913 2.41243 2.81929 3.10960 3.17380 3.18437 3.20576 3.42334 3.72633 4.10541 4.14873 4.28154 4.65158 4.90289 4.91430 5.11064 5.18027 5.24881 5.31162 5.52180 5.60029 5.61278 5.75391 5.80284 5.96733 6.04097 6.15079 6.18134 6.42460 6.50151 6.74531 7.02546 7.15083 7.29084 7.38246 7.84692 8.07995 8.44175 8.66551 9.15074 10.68409 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.005847 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.690729 B = 4787.694331 C = 5554.388169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.093 3.907 3 Si 0.861 3.139 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.252 3.748 10 H 0.088 0.912 11 O -0.351 6.351 12 C 0.469 3.531 13 O -0.503 6.503 14 C -0.084 4.084 15 H 0.115 0.885 16 C -0.105 4.105 17 C -0.183 4.183 18 C 0.374 3.626 19 O -0.448 6.448 20 C -0.172 4.172 21 C 0.047 3.953 22 C -0.249 4.249 23 C -0.208 4.208 24 C -0.071 4.071 25 O -0.162 6.162 26 H 0.273 0.727 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.085 -4.593 3.491 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.114 4.114 3 Si 0.687 3.313 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.570 4.570 8 H 0.108 0.892 9 C 0.198 3.802 10 H 0.105 0.895 11 O -0.267 6.267 12 C 0.311 3.689 13 O -0.390 6.390 14 C -0.104 4.104 15 H 0.133 0.867 16 C -0.143 4.143 17 C -0.220 4.220 18 C 0.249 3.751 19 O -0.321 6.321 20 C -0.209 4.209 21 C -0.005 4.005 22 C -0.268 4.268 23 C -0.227 4.227 24 C -0.138 4.138 25 O -0.058 6.058 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.577 -5.067 3.754 12.314 hybrid contribution 0.258 1.459 -0.447 1.548 sum 10.836 -3.608 3.307 11.889 Atomic orbital electron populations 1.69851 1.06226 1.27993 1.46292 1.24886 0.94861 0.99084 0.92605 0.87134 0.80876 0.83585 0.79675 1.18521 1.20498 1.17999 1.21005 0.86929 0.96077 1.52983 0.89189 1.19479 0.95024 0.83941 0.81730 0.89486 1.86426 1.77369 1.42577 1.20332 1.22884 0.74647 0.89212 0.82132 1.90631 1.45833 1.33227 1.69356 1.21852 1.00834 0.92073 0.95592 0.86711 1.22287 1.04761 0.95687 0.91552 1.22694 1.03233 0.96214 0.99869 1.24978 0.72645 0.87523 0.89954 1.90420 1.42643 1.16786 1.82271 1.22895 1.01748 0.96613 0.99684 1.23415 0.97520 0.85302 0.94296 1.21341 1.09266 0.99216 0.96961 1.21613 1.07224 0.95416 0.98434 1.23829 1.04033 0.95565 0.90392 1.84096 1.62288 1.36463 1.22912 0.91691 0.89787 0.88900 0.88150 0.87944 0.86594 0.87512 0.84591 0.84231 0.78944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.55 13.96 55.43 0.77 -24.77 16 2 C 0.09 2.62 5.47 -17.82 -0.10 2.52 16 3 Si 0.86 20.77 24.74 -169.99 -4.21 16.56 16 4 H -0.26 -6.02 6.79 56.52 0.38 -5.64 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.96 6.09 56.52 0.34 -5.62 16 7 C -0.53 -14.88 9.20 -34.44 -0.32 -15.20 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.25 6.13 2.03 -29.04 -0.06 6.07 16 10 H 0.09 2.18 4.43 -51.93 -0.23 1.95 16 11 O -0.35 -7.64 9.85 -41.59 -0.41 -8.05 16 12 C 0.47 8.95 7.23 36.01 0.26 9.21 16 13 O -0.50 -11.03 14.97 -18.75 -0.28 -11.31 16 14 C -0.08 -1.10 3.42 -89.73 -0.31 -1.41 16 15 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.11 -1.14 5.95 -25.01 -0.15 -1.29 16 17 C -0.18 -1.68 6.69 -26.84 -0.18 -1.86 16 18 C 0.37 4.54 7.89 -27.99 -0.22 4.32 16 19 O -0.45 -6.84 17.99 6.00 0.11 -6.73 16 20 C -0.17 -2.21 6.19 -26.21 -0.16 -2.37 16 21 C 0.05 1.07 6.03 -35.62 -0.21 0.85 16 22 C -0.25 -5.23 9.56 -39.70 -0.38 -5.61 16 23 C -0.21 -3.67 10.91 -39.70 -0.43 -4.11 16 24 C -0.07 -1.21 12.09 29.42 0.36 -0.86 16 25 O -0.16 -3.47 10.65 3.65 0.04 -3.43 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.16 7.47 -51.93 -0.39 0.78 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.12 1.64 8.04 -51.93 -0.42 1.22 16 32 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.14 2.78 6.14 -52.49 -0.32 2.46 16 34 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 35 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 304.07 15.07 4.58 4.58 Total: -1.00 -33.03 304.07 -5.25 -38.28 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.95 Total: 4.60 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.90 Total: -9.73 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.77 Total: -24.77 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.54 Total: -29.52 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.21 Total: 16.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.03 -5.25 -38.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.934 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds