Wall clock time and date at job start Tue Mar 31 2020 00:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99985 * 2 1 4 4 H 1.48510 * 109.47157 * 264.73750 * 3 2 1 5 5 H 1.48500 * 109.47077 * 24.73861 * 3 2 1 6 6 H 1.48499 * 109.47442 * 144.73963 * 3 2 1 7 7 C 1.37878 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99637 * 4.42763 * 7 2 1 9 9 C 1.50700 * 120.00144 * 184.42783 * 7 2 1 10 10 H 1.08999 * 109.47196 * 30.39446 * 9 7 2 11 11 O 1.45206 * 109.46925 * 150.39066 * 9 7 2 12 12 C 1.34229 * 116.99969 * 269.99996 * 11 9 7 13 13 O 1.20823 * 119.99943 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99539 * 180.28004 * 12 11 9 15 15 H 1.08990 * 110.74005 * 59.02134 * 14 12 11 16 16 C 1.54983 * 110.82832 * 182.45832 * 14 12 11 17 17 C 1.54283 * 103.75005 * 155.29272 * 16 14 12 18 18 C 1.51448 * 106.84991 * 336.87371 * 17 16 14 19 19 O 1.20759 * 126.33980 * 179.66505 * 18 17 16 20 20 C 1.52067 * 107.41299 * 359.81974 * 18 17 16 21 21 C 1.50696 * 109.47178 * 270.39007 * 9 7 2 22 22 C 1.34524 * 125.78617 * 98.41411 * 21 9 7 23 23 C 1.41378 * 106.83893 * 179.97438 * 22 21 9 24 24 C 1.34522 * 106.84153 * 0.02562 * 23 22 21 25 25 O 1.34301 * 108.41943 * 359.73468 * 24 23 22 26 26 H 0.96999 * 120.00220 * 0.02562 * 1 2 3 27 27 H 1.09006 * 110.57140 * 273.85702 * 16 14 12 28 28 H 1.09003 * 110.57626 * 36.72838 * 16 14 12 29 29 H 1.09000 * 109.98426 * 96.22296 * 17 16 14 30 30 H 1.08999 * 109.98209 * 217.52693 * 17 16 14 31 31 H 1.09001 * 110.34887 * 264.86197 * 20 18 17 32 32 H 1.08998 * 110.63306 * 142.27136 * 20 18 17 33 33 H 1.07996 * 126.57895 * 0.03572 * 22 21 9 34 34 H 1.08004 * 126.58191 * 179.97438 * 23 22 21 35 35 H 1.07999 * 125.78841 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6079 1.9822 -1.3943 5 1 1.3954 2.6822 0.5859 6 1 3.4867 1.4749 0.8082 7 6 2.0046 -1.1940 0.0005 8 1 1.4670 -2.1280 -0.0713 9 6 3.5082 -1.1959 0.1013 10 1 3.8348 -0.3305 0.6778 11 8 3.9474 -2.4117 0.7626 12 6 4.0615 -2.3712 2.0995 13 8 3.8033 -1.3534 2.6972 14 6 4.5181 -3.5931 2.8541 15 1 5.5054 -3.9083 2.5170 16 6 4.5149 -3.3306 4.3815 17 6 4.3642 -4.7381 4.9951 18 6 3.7259 -5.6126 3.9362 19 8 3.4543 -6.7843 4.0441 20 6 3.4928 -4.7450 2.7093 21 6 4.1044 -1.1327 -1.2813 22 6 4.5604 -0.0238 -1.8913 23 6 5.0290 -0.4204 -3.1649 24 6 4.8309 -1.7477 -3.2572 25 8 4.2757 -2.1746 -2.1112 26 1 -0.4850 0.8400 -0.0004 27 1 5.4548 -2.8753 4.6939 28 1 3.6711 -2.6992 4.6600 29 1 5.3434 -5.1339 5.2645 30 1 3.7246 -4.6936 5.8767 31 1 2.4761 -4.3520 2.7106 32 1 3.6821 -5.3108 1.7971 33 1 4.5679 0.9770 -1.4857 34 1 5.4622 0.2197 -3.9193 35 1 5.0808 -2.3660 -4.1067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345548902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:55 Heat of formation + Delta-G solvation = -131.899789 kcal Electronic energy + Delta-G solvation = -21574.497959 eV Core-core repulsion = 18117.608256 eV Total energy + Delta-G solvation = -3456.889702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.38875 -41.63527 -40.44743 -37.91006 -36.77507 -35.22846 -33.89594 -32.40488 -30.43350 -28.81220 -28.31281 -25.33667 -23.50633 -22.65184 -21.41440 -20.94657 -20.45209 -19.59271 -18.71415 -18.52321 -17.52361 -17.32762 -16.89481 -16.61315 -16.32548 -16.00552 -15.59732 -15.01601 -14.88939 -14.57193 -14.34584 -14.02949 -13.93026 -13.68705 -13.33157 -13.28318 -12.89985 -12.73762 -12.52726 -12.32130 -12.16448 -11.98328 -11.76915 -11.52535 -11.29939 -11.01387 -10.75873 -10.57946 -9.30248 -8.56490 -6.69346 0.83796 0.86931 1.19975 1.23735 1.28822 1.29578 1.68623 1.92367 2.12123 2.22975 2.82633 3.09829 3.27217 3.60112 3.77546 4.03588 4.14977 4.18112 4.22298 4.25703 4.28905 4.33097 4.41830 4.68360 4.82724 4.92133 4.97593 5.02795 5.03702 5.12667 5.23316 5.25247 5.60667 5.68543 5.97007 6.32358 6.37843 6.39795 6.82095 7.02378 8.58274 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.005847 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.690729 B = 4787.694331 C = 5554.388169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.041 3.959 3 Si 0.917 3.083 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.545 4.545 8 H 0.045 0.955 9 C 0.259 3.741 10 H 0.078 0.922 11 O -0.358 6.358 12 C 0.461 3.539 13 O -0.535 6.535 14 C -0.076 4.076 15 H 0.151 0.849 16 C -0.101 4.101 17 C -0.165 4.165 18 C 0.384 3.616 19 O -0.480 6.480 20 C -0.176 4.176 21 C 0.003 3.997 22 C -0.248 4.248 23 C -0.214 4.214 24 C -0.053 4.053 25 O -0.184 6.184 26 H 0.277 0.723 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.140 0.860 34 H 0.179 0.821 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.077 -4.356 3.092 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.739 3.261 4 H -0.164 1.164 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.582 4.582 8 H 0.063 0.937 9 C 0.205 3.795 10 H 0.096 0.904 11 O -0.275 6.275 12 C 0.305 3.695 13 O -0.425 6.425 14 C -0.095 4.095 15 H 0.168 0.832 16 C -0.138 4.138 17 C -0.202 4.202 18 C 0.261 3.739 19 O -0.356 6.356 20 C -0.214 4.214 21 C -0.048 4.048 22 C -0.268 4.268 23 C -0.233 4.233 24 C -0.120 4.120 25 O -0.080 6.080 26 H 0.086 0.914 27 H 0.128 0.872 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.157 0.843 34 H 0.197 0.803 35 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 13.585 -4.836 3.356 14.805 hybrid contribution -0.634 1.275 -0.400 1.479 sum 12.951 -3.562 2.956 13.753 Atomic orbital electron populations 1.69972 1.07877 1.29114 1.48390 1.25701 0.95608 1.02675 0.92141 0.86267 0.79856 0.79108 0.80857 1.16407 1.19802 1.17176 1.21095 0.89312 0.94491 1.53264 0.93717 1.19089 0.92769 0.84501 0.83174 0.90426 1.86441 1.77448 1.41497 1.22101 1.24156 0.73423 0.90752 0.81201 1.90603 1.47281 1.35089 1.69493 1.22057 1.02000 0.88989 0.96405 0.83165 1.22325 1.05273 0.96692 0.89537 1.22645 1.04898 0.93862 0.98812 1.25113 0.71730 0.86943 0.90081 1.90421 1.44277 1.18159 1.82712 1.22906 1.00696 0.96924 1.00898 1.22987 1.01031 0.86548 0.94219 1.21677 1.08107 0.98711 0.98266 1.22049 1.07215 0.96150 0.97847 1.24927 1.01005 0.96430 0.89629 1.84056 1.63063 1.36646 1.24259 0.91367 0.87246 0.91040 0.84815 0.86246 0.88746 0.87496 0.84260 0.80319 0.73849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.36 13.96 21.45 0.30 -56.06 16 2 C 0.04 2.42 5.47 84.65 0.46 2.88 16 3 Si 0.92 43.38 24.74 68.60 1.70 45.08 16 4 H -0.24 -10.50 6.79 99.48 0.68 -9.82 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.25 -11.27 6.09 99.48 0.61 -10.66 16 7 C -0.54 -32.07 9.20 25.60 0.24 -31.84 16 8 H 0.04 2.93 8.06 -2.91 -0.02 2.91 16 9 C 0.26 13.00 2.03 29.10 0.06 13.05 16 10 H 0.08 3.98 4.43 -2.39 -0.01 3.97 16 11 O -0.36 -16.14 9.85 -49.18 -0.48 -16.63 16 12 C 0.46 17.92 7.23 71.24 0.51 18.43 16 13 O -0.54 -24.12 14.97 21.97 0.33 -23.79 16 14 C -0.08 -1.90 3.42 -10.22 -0.03 -1.94 16 15 H 0.15 2.75 8.14 -2.39 -0.02 2.73 16 16 C -0.10 -1.98 5.95 31.71 0.19 -1.79 16 17 C -0.17 -2.52 6.69 30.52 0.20 -2.32 16 18 C 0.38 8.83 7.89 29.78 0.23 9.06 16 19 O -0.48 -14.26 17.99 -1.45 -0.03 -14.29 16 20 C -0.18 -4.57 6.19 30.93 0.19 -4.38 16 21 C 0.00 0.15 6.03 24.83 0.15 0.30 16 22 C -0.25 -9.99 9.56 22.19 0.21 -9.78 16 23 C -0.21 -6.78 10.91 22.19 0.24 -6.54 16 24 C -0.05 -1.65 12.09 66.97 0.81 -0.84 16 25 O -0.18 -7.71 10.65 -0.45 0.00 -7.71 16 26 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.07 1.75 7.47 -2.39 -0.02 1.73 16 29 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 2.87 8.04 -2.39 -0.02 2.85 16 32 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.14 5.40 6.14 -2.91 -0.02 5.39 16 34 H 0.18 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.25 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -77.20 304.07 6.27 -70.93 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.99 Total: 18.15 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 3.47 Total: -15.68 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.30 Total: -56.06 kcal Atomic # 8 Polarization: -62.24 SS G_CDS: -0.19 Total: -62.42 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.70 Total: 45.08 kcal Total: -77.20 6.27 -70.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.966 kcal (2) G-P(sol) polarization free energy of solvation -77.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds