Wall clock time and date at job start Tue Mar 31 2020 00:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00400 * 2 1 4 4 H 1.48497 * 109.47402 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47141 * 299.99974 * 3 2 1 6 6 H 1.48506 * 109.47005 * 59.99840 * 3 2 1 7 7 C 1.37889 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99678 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99659 * 359.73116 * 7 2 1 10 10 H 1.08997 * 109.46875 * 299.99728 * 9 7 2 11 11 O 1.42897 * 109.47019 * 179.97438 * 9 7 2 12 12 C 1.35002 * 116.99991 * 149.99268 * 11 9 7 13 13 O 1.21714 * 120.00109 * 0.02562 * 12 11 9 14 14 C 1.41215 * 120.00060 * 179.97438 * 12 11 9 15 15 C 1.35783 * 120.00268 * 173.19120 * 14 12 11 16 16 C 1.41497 * 119.99908 * 348.37427 * 15 14 12 17 17 C 1.37092 * 125.47946 * 135.99990 * 16 15 14 18 18 C 1.37398 * 113.22181 * 179.79631 * 17 16 15 19 19 C 1.33894 * 115.12841 * 0.50156 * 18 17 16 20 20 S 1.70605 * 111.01891 * 359.71960 * 19 18 17 21 21 C 1.52997 * 109.47316 * 59.99879 * 9 7 2 22 22 C 1.53007 * 117.49645 * 248.74622 * 21 9 7 23 23 C 1.53007 * 117.49900 * 180.08834 * 21 9 7 24 24 H 0.96997 * 119.99591 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00119 * 353.19396 * 14 12 11 26 26 H 1.08002 * 119.99906 * 168.36964 * 15 14 12 27 27 H 1.08003 * 123.39034 * 359.97282 * 17 16 15 28 28 H 1.08002 * 122.43844 * 180.21948 * 18 17 16 29 29 H 1.08005 * 124.48824 * 179.74282 * 19 18 17 30 30 H 1.08998 * 115.55425 * 34.41411 * 21 9 7 31 31 H 1.08998 * 117.49803 * 359.97438 * 22 21 9 32 32 H 1.09004 * 117.49642 * 145.01993 * 22 21 9 33 33 H 1.09001 * 117.49463 * 214.97764 * 23 21 9 34 34 H 1.08994 * 117.49549 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0072 10 1 0.6280 -2.5544 0.8999 11 8 2.1795 -3.5854 0.0059 12 6 1.7886 -4.7266 0.6122 13 8 0.6881 -4.7959 1.1273 14 6 2.6562 -5.8402 0.6476 15 6 2.3225 -6.9381 1.3736 16 6 1.2411 -6.8820 2.2844 17 6 0.2743 -7.8428 2.4319 18 6 -0.6556 -7.5324 3.3945 19 6 -0.4681 -6.3572 4.0081 20 16 0.9169 -5.5654 3.4038 21 6 0.3662 -2.5837 -1.2381 22 6 -1.1487 -2.5154 -1.0344 23 6 -0.4862 -3.8419 -1.4151 24 1 -0.4849 0.8401 -0.0004 25 1 3.5853 -5.8187 0.0974 26 1 2.8823 -7.8541 1.2557 27 1 0.2480 -8.7535 1.8518 28 1 -1.4804 -8.1866 3.6355 29 1 -1.1087 -5.9630 4.7832 30 1 0.7744 -2.1218 -2.1371 31 1 -1.5149 -2.4108 -0.0132 32 1 -1.7370 -2.0089 -1.7996 33 1 -0.6390 -4.2075 -2.4305 34 1 -0.4164 -4.6095 -0.6445 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:08 Heat of formation + Delta-G solvation = 4.812802 kcal Electronic energy + Delta-G solvation = -19404.478821 eV Core-core repulsion = 16396.270292 eV Total energy + Delta-G solvation = -3008.208528 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88365 -37.75911 -36.51625 -34.91019 -33.53120 -32.59801 -28.97940 -27.66766 -24.94200 -23.38840 -22.36068 -21.18133 -19.84150 -19.39652 -19.10686 -17.48916 -16.62220 -16.30707 -15.60734 -15.26159 -14.72231 -14.34262 -14.02820 -13.72674 -12.99879 -12.85253 -12.67611 -12.48997 -12.16360 -11.94647 -11.42459 -11.29147 -11.02154 -10.90791 -10.55363 -10.40269 -10.24036 -9.85375 -9.75454 -9.47346 -9.30333 -8.96585 -8.58921 -8.39453 -8.11066 -7.50274 -6.11036 -4.18521 0.47702 1.78981 2.15854 2.39877 2.97398 3.25793 3.33268 3.37764 3.70648 3.94973 4.40843 5.06346 5.11401 5.21278 5.25870 5.44043 5.58441 5.67890 5.84450 5.99232 6.01861 6.21476 6.30308 6.34372 6.50908 6.57935 6.63782 6.70533 6.78564 7.06461 7.23705 7.34661 7.47162 7.68879 7.91053 8.18168 8.70730 8.97374 9.46284 10.95622 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.005398 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.925989 B = 5185.973523 C = 5282.725836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.068 0.932 9 C 0.246 3.754 10 H 0.047 0.953 11 O -0.342 6.342 12 C 0.470 3.530 13 O -0.501 6.501 14 C -0.190 4.190 15 C 0.009 3.991 16 C -0.206 4.206 17 C -0.109 4.109 18 C -0.156 4.156 19 C -0.266 4.266 20 S 0.283 5.717 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.229 4.229 24 H 0.262 0.738 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.157 0.843 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -13.373 4.590 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.086 0.914 9 C 0.192 3.808 10 H 0.065 0.935 11 O -0.258 6.258 12 C 0.317 3.683 13 O -0.395 6.395 14 C -0.212 4.212 15 C -0.011 4.011 16 C -0.324 4.324 17 C -0.141 4.141 18 C -0.188 4.188 19 C -0.404 4.404 20 S 0.555 5.445 21 C -0.133 4.133 22 C -0.161 4.161 23 C -0.266 4.266 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.161 0.839 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.174 0.826 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.113 -11.798 5.114 13.032 hybrid contribution -0.734 -0.325 -0.574 0.987 sum 1.379 -12.123 4.540 13.019 Atomic orbital electron populations 1.70065 1.05726 1.26723 1.48370 1.24880 0.94991 0.99019 0.94661 0.86349 0.80074 0.82843 0.77630 1.19545 1.20864 1.20879 1.20971 0.93748 0.88512 1.53099 0.91387 1.19754 0.86523 0.81008 0.93503 0.93527 1.86215 1.48772 1.22026 1.68791 1.19939 0.86919 0.84525 0.76877 1.90937 1.22824 1.83781 1.41978 1.21709 1.01555 0.93266 1.04711 1.20688 0.92765 0.97194 0.90427 1.22538 1.03166 1.00548 1.06160 1.20602 0.94891 0.99343 0.99245 1.19735 1.01849 0.97757 0.99506 1.25336 1.06429 1.00746 1.07890 1.83145 1.19301 1.18232 1.23809 1.22619 0.92873 0.97246 1.00534 1.22339 0.95744 0.96810 1.01220 1.23284 1.09468 0.93046 1.00763 0.92798 0.84017 0.83929 0.84598 0.85283 0.82572 0.89594 0.89450 0.91027 0.91321 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.33 11.42 55.43 0.63 -23.69 16 2 C 0.07 1.86 5.31 -17.81 -0.09 1.77 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.62 8.87 -34.44 -0.31 -14.92 16 8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.45 2.21 -27.88 -0.06 6.39 16 10 H 0.05 1.35 6.87 -51.93 -0.36 0.99 16 11 O -0.34 -8.10 9.71 -41.32 -0.40 -8.50 16 12 C 0.47 9.57 6.36 31.86 0.20 9.77 16 13 O -0.50 -10.83 8.74 -19.43 -0.17 -11.00 16 14 C -0.19 -2.92 9.95 -39.33 -0.39 -3.31 16 15 C 0.01 0.12 9.88 -39.22 -0.39 -0.27 16 16 C -0.21 -3.05 4.61 -38.76 -0.18 -3.23 16 17 C -0.11 -1.48 10.25 -40.30 -0.41 -1.89 16 18 C -0.16 -2.10 10.14 -41.41 -0.42 -2.52 16 19 C -0.27 -3.78 10.92 29.21 0.32 -3.46 16 20 S 0.28 4.50 19.38 -107.50 -2.08 2.42 16 21 C -0.11 -2.83 4.46 -90.61 -0.40 -3.24 16 22 C -0.12 -2.92 9.04 -26.69 -0.24 -3.16 16 23 C -0.23 -5.06 9.79 -26.69 -0.26 -5.32 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 26 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.14 1.49 8.06 -52.48 -0.42 1.06 16 28 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.16 1.89 8.06 -52.48 -0.42 1.47 16 30 H 0.09 2.22 8.11 -51.93 -0.42 1.79 16 31 H 0.09 2.20 8.05 -51.93 -0.42 1.78 16 32 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.09 2.17 5.33 -51.93 -0.28 1.90 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -30.15 302.96 -9.09 -39.24 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.98 Total: 4.38 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -2.64 Total: -23.39 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.63 Total: -23.69 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.57 Total: -19.50 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -2.08 Total: 2.42 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.15 -9.09 -39.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.051 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds