Wall clock time and date at job start Tue Mar 31 2020 00:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00400 * 2 1 4 4 H 1.48497 * 109.47402 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47141 * 299.99974 * 3 2 1 6 6 H 1.48506 * 109.47005 * 59.99840 * 3 2 1 7 7 C 1.37889 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99678 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99659 * 359.73116 * 7 2 1 10 10 H 1.08997 * 109.46875 * 299.99728 * 9 7 2 11 11 O 1.42897 * 109.47019 * 179.97438 * 9 7 2 12 12 C 1.35002 * 116.99991 * 149.99268 * 11 9 7 13 13 O 1.21714 * 120.00109 * 0.02562 * 12 11 9 14 14 C 1.41215 * 120.00060 * 179.97438 * 12 11 9 15 15 C 1.35783 * 120.00268 * 173.19120 * 14 12 11 16 16 C 1.41497 * 119.99908 * 348.37427 * 15 14 12 17 17 C 1.37092 * 125.47946 * 135.99990 * 16 15 14 18 18 C 1.37398 * 113.22181 * 179.79631 * 17 16 15 19 19 C 1.33894 * 115.12841 * 0.50156 * 18 17 16 20 20 S 1.70605 * 111.01891 * 359.71960 * 19 18 17 21 21 C 1.52997 * 109.47316 * 59.99879 * 9 7 2 22 22 C 1.53007 * 117.49645 * 248.74622 * 21 9 7 23 23 C 1.53007 * 117.49900 * 180.08834 * 21 9 7 24 24 H 0.96997 * 119.99591 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00119 * 353.19396 * 14 12 11 26 26 H 1.08002 * 119.99906 * 168.36964 * 15 14 12 27 27 H 1.08003 * 123.39034 * 359.97282 * 17 16 15 28 28 H 1.08002 * 122.43844 * 180.21948 * 18 17 16 29 29 H 1.08005 * 124.48824 * 179.74282 * 19 18 17 30 30 H 1.08998 * 115.55425 * 34.41411 * 21 9 7 31 31 H 1.08998 * 117.49803 * 359.97438 * 22 21 9 32 32 H 1.09004 * 117.49642 * 145.01993 * 22 21 9 33 33 H 1.09001 * 117.49463 * 214.97764 * 23 21 9 34 34 H 1.08994 * 117.49549 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0072 10 1 0.6280 -2.5544 0.8999 11 8 2.1795 -3.5854 0.0059 12 6 1.7886 -4.7266 0.6122 13 8 0.6881 -4.7959 1.1273 14 6 2.6562 -5.8402 0.6476 15 6 2.3225 -6.9381 1.3736 16 6 1.2411 -6.8820 2.2844 17 6 0.2743 -7.8428 2.4319 18 6 -0.6556 -7.5324 3.3945 19 6 -0.4681 -6.3572 4.0081 20 16 0.9169 -5.5654 3.4038 21 6 0.3662 -2.5837 -1.2381 22 6 -1.1487 -2.5154 -1.0344 23 6 -0.4862 -3.8419 -1.4151 24 1 -0.4849 0.8401 -0.0004 25 1 3.5853 -5.8187 0.0974 26 1 2.8823 -7.8541 1.2557 27 1 0.2480 -8.7535 1.8518 28 1 -1.4804 -8.1866 3.6355 29 1 -1.1087 -5.9630 4.7832 30 1 0.7744 -2.1218 -2.1371 31 1 -1.5149 -2.4108 -0.0132 32 1 -1.7370 -2.0089 -1.7996 33 1 -0.6390 -4.2075 -2.4305 34 1 -0.4164 -4.6095 -0.6445 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346707245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:07 Heat of formation + Delta-G solvation = -10.587897 kcal Electronic energy + Delta-G solvation = -19405.146645 eV Core-core repulsion = 16396.270292 eV Total energy + Delta-G solvation = -3008.876353 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48567 -39.02140 -38.13367 -36.68223 -34.75839 -34.67485 -30.41311 -29.39218 -26.29379 -25.10820 -23.80782 -23.05308 -21.46977 -20.84339 -20.47566 -19.02052 -18.46097 -17.84051 -17.09178 -16.77172 -16.54758 -15.77928 -15.60441 -15.09878 -14.68720 -14.43372 -13.94286 -13.67659 -13.51746 -13.40280 -13.08105 -12.92944 -12.88928 -12.74537 -12.26852 -12.15240 -11.75129 -11.69097 -11.33736 -11.15153 -10.90829 -10.71221 -10.54993 -10.38844 -9.27602 -8.74972 -8.19349 -6.35628 -0.68506 0.66028 1.00233 1.26428 1.41539 1.42128 1.55231 1.86721 2.26416 2.33552 2.57669 3.07990 3.30176 3.99416 4.12002 4.22688 4.23876 4.34008 4.48713 4.55846 4.58449 4.69317 4.77113 4.82813 4.92869 5.12829 5.21853 5.30395 5.32631 5.42433 5.46687 5.52779 5.61463 5.68944 5.93148 6.26158 6.69080 7.15658 7.36758 8.86845 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.005398 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.925989 B = 5185.973523 C = 5282.725836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.060 0.940 9 C 0.256 3.744 10 H 0.007 0.993 11 O -0.360 6.360 12 C 0.461 3.539 13 O -0.520 6.520 14 C -0.224 4.224 15 C 0.048 3.952 16 C -0.223 4.223 17 C -0.099 4.099 18 C -0.159 4.159 19 C -0.266 4.266 20 S 0.203 5.797 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.197 4.197 24 H 0.265 0.735 25 H 0.167 0.833 26 H 0.197 0.803 27 H 0.171 0.829 28 H 0.158 0.842 29 H 0.171 0.829 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -15.395 4.059 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.177 4.177 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.591 4.591 8 H 0.078 0.922 9 C 0.202 3.798 10 H 0.025 0.975 11 O -0.277 6.277 12 C 0.310 3.690 13 O -0.415 6.415 14 C -0.245 4.245 15 C 0.029 3.971 16 C -0.341 4.341 17 C -0.130 4.130 18 C -0.190 4.190 19 C -0.404 4.404 20 S 0.475 5.525 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.234 4.234 24 H 0.074 0.926 25 H 0.184 0.816 26 H 0.214 0.786 27 H 0.188 0.812 28 H 0.176 0.824 29 H 0.188 0.812 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.311 -13.844 4.591 14.768 hybrid contribution -0.897 0.136 -0.279 0.949 sum 1.414 -13.708 4.312 14.440 Atomic orbital electron populations 1.70176 1.06964 1.27674 1.48320 1.25695 0.95905 1.02209 0.93856 0.85320 0.78862 0.78407 0.77909 1.19106 1.19967 1.20288 1.21250 0.93612 0.90061 1.54221 0.92194 1.19297 0.86418 0.81730 0.92364 0.97496 1.86189 1.48535 1.22830 1.70181 1.20822 0.87762 0.84417 0.75977 1.90937 1.23984 1.83919 1.42619 1.21756 1.02577 0.92211 1.07992 1.21267 0.91018 0.97881 0.86959 1.22823 1.04726 0.99722 1.06823 1.21072 0.93690 0.99731 0.98535 1.20181 1.02467 0.97568 0.98831 1.25557 1.05493 1.00935 1.08392 1.83485 1.21642 1.20884 1.26474 1.22438 0.93278 0.99734 0.99524 1.22236 0.95064 0.98387 1.00330 1.23246 1.06385 0.91735 1.02025 0.92553 0.81567 0.78596 0.81179 0.82402 0.81155 0.90775 0.91811 0.89697 0.88367 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.12 11.42 21.45 0.24 -50.88 16 2 C 0.03 1.40 5.31 84.66 0.45 1.85 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.55 -31.98 8.87 25.60 0.23 -31.76 16 8 H 0.06 3.45 7.81 -2.91 -0.02 3.42 16 9 C 0.26 14.07 2.21 29.85 0.07 14.13 16 10 H 0.01 0.45 6.87 -2.39 -0.02 0.43 16 11 O -0.36 -17.73 9.71 -59.21 -0.58 -18.30 16 12 C 0.46 19.13 6.36 68.55 0.44 19.57 16 13 O -0.52 -23.10 8.74 19.13 0.17 -22.93 16 14 C -0.22 -6.58 9.95 22.43 0.22 -6.35 16 15 C 0.05 1.11 9.88 22.50 0.22 1.33 16 16 C -0.22 -6.17 4.61 22.80 0.11 -6.07 16 17 C -0.10 -2.34 10.25 21.80 0.22 -2.12 16 18 C -0.16 -3.84 10.14 21.08 0.21 -3.63 16 19 C -0.27 -7.36 10.92 66.83 0.73 -6.63 16 20 S 0.20 6.61 19.38 -56.49 -1.09 5.51 16 21 C -0.13 -6.67 4.46 -10.79 -0.05 -6.72 16 22 C -0.12 -5.89 9.04 30.62 0.28 -5.62 16 23 C -0.20 -8.65 9.79 30.62 0.30 -8.35 16 24 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.17 3.94 8.06 -2.91 -0.02 3.91 16 26 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 27 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.17 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.07 3.92 8.11 -2.39 -0.02 3.90 16 31 H 0.06 3.34 8.05 -2.39 -0.02 3.32 16 32 H 0.08 3.78 8.14 -2.38 -0.02 3.76 16 33 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.09 4.03 5.33 -2.39 -0.01 4.02 16 Total: -1.00 -68.21 302.96 5.30 -62.92 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.10 Total: 18.37 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 3.42 Total: -40.36 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.24 Total: -50.88 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.41 Total: -41.24 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -1.09 Total: 5.51 kcal Total: -68.21 5.30 -62.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.328 kcal (2) G-P(sol) polarization free energy of solvation -68.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds