Wall clock time and date at job start Tue Mar 31 2020 00:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42891 * 112.94378 * 50.33064 * 9 7 2 11 11 C 1.53937 * 113.73251 * 278.76176 * 9 7 2 12 12 N 1.48184 * 86.10300 * 221.96355 * 11 9 7 13 13 C 1.37662 * 111.07406 * 137.52091 * 12 11 9 14 14 N 1.30854 * 124.96508 * 80.56531 * 13 12 11 15 15 C 1.36145 * 108.70524 * 179.97438 * 14 13 12 16 16 C 1.39601 * 133.65250 * 180.02562 * 15 14 13 17 17 C 1.37751 * 119.78201 * 179.97438 * 16 15 14 18 18 C 1.38645 * 120.40518 * 359.97438 * 17 16 15 19 19 C 1.38218 * 120.43126 * 0.03068 * 18 17 16 20 20 F 1.35095 * 120.07282 * 179.97438 * 19 18 17 21 21 C 1.38741 * 119.85862 * 359.94959 * 19 18 17 22 22 O 1.34437 * 124.96646 * 260.25983 * 13 12 11 23 23 C 1.47960 * 90.80064 * 24.59714 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96701 * 114.00462 * 309.66689 * 10 9 7 26 26 H 1.09004 * 113.75714 * 336.24047 * 11 9 7 27 27 H 1.08998 * 113.75976 * 107.60271 * 11 9 7 28 28 H 1.08002 * 120.10887 * 0.02562 * 16 15 14 29 29 H 1.07995 * 119.80237 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.78553 * 179.97438 * 18 17 16 31 31 H 1.08999 * 113.76188 * 221.08263 * 23 12 11 32 32 H 1.09010 * 113.75297 * 89.72463 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0681 -0.3547 1.0137 11 6 4.1316 -0.9785 -1.3923 12 7 5.0973 -2.0371 -1.0148 13 6 5.3136 -2.9056 -2.0608 14 7 6.1169 -2.6802 -3.0689 15 6 6.0790 -3.7533 -3.9058 16 6 6.7167 -4.0597 -5.1093 17 6 6.4626 -5.2622 -5.7314 18 6 5.5781 -6.1699 -5.1693 19 6 4.9396 -5.8796 -3.9783 20 9 4.0787 -6.7692 -3.4374 21 6 5.1852 -4.6729 -3.3392 22 8 4.7349 -4.1118 -2.1929 23 6 4.1311 -2.6025 -0.0473 24 1 -0.4850 0.8401 0.0004 25 1 3.7022 0.5402 1.0281 26 1 3.4728 -1.2580 -2.2145 27 1 4.5845 0.0042 -1.5240 28 1 7.4075 -3.3567 -5.5507 29 1 6.9554 -5.4995 -6.6626 30 1 5.3860 -7.1096 -5.6658 31 1 4.5837 -2.9151 0.8937 32 1 3.4722 -3.3580 -0.4754 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348111090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:49 Heat of formation + Delta-G solvation = 11.828550 kcal Electronic energy + Delta-G solvation = -21249.487685 eV Core-core repulsion = 17707.662957 eV Total energy + Delta-G solvation = -3541.824728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.04110 -43.21760 -39.89780 -37.88237 -35.25469 -34.40435 -32.62439 -30.41290 -30.14662 -28.02451 -26.01483 -25.11992 -23.35908 -22.29001 -21.40199 -19.59678 -18.39123 -18.12058 -17.60561 -17.06391 -16.63917 -16.28452 -15.84411 -15.53340 -15.46474 -14.66471 -14.31826 -13.97355 -13.33548 -13.26223 -13.03540 -12.55958 -12.41432 -12.32551 -12.13082 -11.95561 -11.58988 -11.16335 -10.96199 -10.73817 -10.52278 -10.23105 -9.83042 -9.41149 -9.10481 -8.88699 -8.69981 -8.12988 -6.49085 -4.57038 0.50184 0.97266 2.19216 2.39223 2.95970 3.00464 3.11925 3.39664 3.46566 3.92365 3.97953 4.43533 4.54103 4.60638 4.69914 4.94471 4.99482 5.10413 5.30636 5.41532 5.57780 5.64272 5.71602 5.94059 5.98899 6.05949 6.18634 6.23070 6.25627 6.45882 6.52268 7.06408 7.10259 7.74517 7.95722 8.40879 8.53896 9.07061 10.62655 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.029059 B = 0.004856 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.318122 B = 5764.138992 C = 6072.818100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.082 3.918 3 Si 0.856 3.144 4 H -0.264 1.264 5 H -0.253 1.253 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.091 0.909 9 C 0.209 3.791 10 O -0.547 6.547 11 C -0.010 4.010 12 N -0.382 5.382 13 C 0.424 3.576 14 N -0.491 5.491 15 C 0.074 3.926 16 C -0.083 4.083 17 C -0.090 4.090 18 C -0.146 4.146 19 C 0.137 3.863 20 F -0.130 7.130 21 C -0.039 4.039 22 O -0.224 6.224 23 C 0.026 3.974 24 H 0.272 0.728 25 H 0.354 0.646 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.103 0.897 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 -7.909 -9.788 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.124 4.124 3 Si 0.684 3.316 4 H -0.190 1.190 5 H -0.178 1.178 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.109 0.891 9 C 0.167 3.833 10 O -0.358 6.358 11 C -0.136 4.136 12 N -0.110 5.110 13 C 0.125 3.875 14 N -0.225 5.225 15 C -0.040 4.040 16 C -0.103 4.103 17 C -0.109 4.109 18 C -0.165 4.165 19 C 0.117 3.883 20 F -0.109 7.109 21 C -0.091 4.091 22 O -0.114 6.114 23 C -0.101 4.101 24 H 0.083 0.917 25 H 0.206 0.794 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.167 0.833 31 H 0.121 0.879 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.387 -7.657 -9.491 16.684 hybrid contribution -1.159 0.414 -0.110 1.236 sum 10.228 -7.243 -9.601 15.787 Atomic orbital electron populations 1.69857 1.06138 1.27828 1.46862 1.25015 0.94959 0.99138 0.93306 0.87360 0.80699 0.84127 0.79434 1.18988 1.17751 1.20769 1.21254 0.87485 0.95856 1.53397 0.89062 1.20397 0.92940 0.86977 0.82943 1.86466 1.67418 1.25681 1.56217 1.25617 0.90638 0.94023 1.03303 1.66216 1.36215 1.05098 1.03434 1.25339 0.87893 0.81891 0.92410 1.71144 1.22611 1.24828 1.03898 1.19816 0.97360 0.89979 0.96851 1.20326 1.00109 0.97598 0.92224 1.20819 0.97493 0.92514 1.00108 1.20913 0.99300 1.02157 0.94139 1.16430 0.93938 0.84269 0.93654 1.91535 1.67427 1.66431 1.85487 1.20114 1.02999 0.97239 0.88798 1.84701 1.58131 1.31356 1.37183 1.24293 0.91394 0.98824 0.95540 0.91738 0.79354 0.89119 0.88327 0.84080 0.83712 0.83258 0.87854 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.38 13.96 55.43 0.77 -23.61 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.86 18.69 24.30 -169.99 -4.13 14.56 16 4 H -0.26 -5.54 7.05 56.52 0.40 -5.15 16 5 H -0.25 -5.18 5.15 56.52 0.29 -4.89 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.06 9.19 -34.44 -0.32 -14.37 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 9 C 0.21 4.74 1.05 -90.84 -0.10 4.65 16 10 O -0.55 -12.54 13.35 -35.23 -0.47 -13.01 16 11 C -0.01 -0.21 6.41 -2.63 -0.02 -0.23 16 12 N -0.38 -7.82 6.32 -178.76 -1.13 -8.95 16 13 C 0.42 8.42 7.16 -87.64 -0.63 7.79 16 14 N -0.49 -9.43 11.39 -12.14 -0.14 -9.57 16 15 C 0.07 1.22 7.23 -84.71 -0.61 0.61 16 16 C -0.08 -0.99 10.10 -39.25 -0.40 -1.39 16 17 C -0.09 -0.82 10.02 -39.61 -0.40 -1.22 16 18 C -0.15 -1.49 10.01 -39.44 -0.39 -1.89 16 19 C 0.14 1.95 7.31 -39.40 -0.29 1.66 16 20 F -0.13 -1.94 17.27 2.25 0.04 -1.90 16 21 C -0.04 -0.67 7.40 -38.66 -0.29 -0.95 16 22 O -0.22 -4.33 9.30 2.41 0.02 -4.31 16 23 C 0.03 0.53 7.15 -2.76 -0.02 0.51 16 24 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 25 H 0.35 7.74 3.57 45.56 0.16 7.90 16 26 H 0.09 1.90 7.86 -51.93 -0.41 1.50 16 27 H 0.10 2.01 6.82 -51.93 -0.35 1.66 16 28 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 30 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 32 H 0.10 1.99 6.95 -51.92 -0.36 1.63 16 LS Contribution 277.58 15.07 4.18 4.18 Total: -1.00 -29.45 277.58 -6.72 -36.18 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -2.32 Total: 9.20 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -3.55 Total: -2.77 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.49 Total: -42.13 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.45 Total: -17.31 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.13 Total: 14.56 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.45 -6.72 -36.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348111090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.007 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds