Wall clock time and date at job start Tue Mar 31 2020 00:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42891 * 112.94378 * 50.33064 * 9 7 2 11 11 C 1.53937 * 113.73251 * 278.76176 * 9 7 2 12 12 N 1.48184 * 86.10300 * 221.96355 * 11 9 7 13 13 C 1.37662 * 111.07406 * 137.52091 * 12 11 9 14 14 N 1.30854 * 124.96508 * 80.56531 * 13 12 11 15 15 C 1.36145 * 108.70524 * 179.97438 * 14 13 12 16 16 C 1.39601 * 133.65250 * 180.02562 * 15 14 13 17 17 C 1.37751 * 119.78201 * 179.97438 * 16 15 14 18 18 C 1.38645 * 120.40518 * 359.97438 * 17 16 15 19 19 C 1.38218 * 120.43126 * 0.03068 * 18 17 16 20 20 F 1.35095 * 120.07282 * 179.97438 * 19 18 17 21 21 C 1.38741 * 119.85862 * 359.94959 * 19 18 17 22 22 O 1.34437 * 124.96646 * 260.25983 * 13 12 11 23 23 C 1.47960 * 90.80064 * 24.59714 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96701 * 114.00462 * 309.66689 * 10 9 7 26 26 H 1.09004 * 113.75714 * 336.24047 * 11 9 7 27 27 H 1.08998 * 113.75976 * 107.60271 * 11 9 7 28 28 H 1.08002 * 120.10887 * 0.02562 * 16 15 14 29 29 H 1.07995 * 119.80237 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.78553 * 179.97438 * 18 17 16 31 31 H 1.08999 * 113.76188 * 221.08263 * 23 12 11 32 32 H 1.09010 * 113.75297 * 89.72463 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0681 -0.3547 1.0137 11 6 4.1316 -0.9785 -1.3923 12 7 5.0973 -2.0371 -1.0148 13 6 5.3136 -2.9056 -2.0608 14 7 6.1169 -2.6802 -3.0689 15 6 6.0790 -3.7533 -3.9058 16 6 6.7167 -4.0597 -5.1093 17 6 6.4626 -5.2622 -5.7314 18 6 5.5781 -6.1699 -5.1693 19 6 4.9396 -5.8796 -3.9783 20 9 4.0787 -6.7692 -3.4374 21 6 5.1852 -4.6729 -3.3392 22 8 4.7349 -4.1118 -2.1929 23 6 4.1311 -2.6025 -0.0473 24 1 -0.4850 0.8401 0.0004 25 1 3.7022 0.5402 1.0281 26 1 3.4728 -1.2580 -2.2145 27 1 4.5845 0.0042 -1.5240 28 1 7.4075 -3.3567 -5.5507 29 1 6.9554 -5.4995 -6.6626 30 1 5.3860 -7.1096 -5.6658 31 1 4.5837 -2.9151 0.8937 32 1 3.4722 -3.3580 -0.4754 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348111090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:47 Heat of formation + Delta-G solvation = -14.023934 kcal Electronic energy + Delta-G solvation = -21250.608732 eV Core-core repulsion = 17707.662957 eV Total energy + Delta-G solvation = -3542.945776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -50.13015 -44.52181 -41.50915 -38.95587 -36.97144 -35.73082 -34.63379 -31.64797 -31.28506 -29.56904 -27.65411 -26.87516 -24.47396 -23.48293 -22.77912 -21.29938 -19.86351 -19.49492 -19.02437 -18.49152 -18.08293 -18.00067 -16.97315 -16.71315 -16.61393 -16.27183 -15.69963 -15.44928 -14.96895 -14.87942 -14.32534 -14.21616 -13.94276 -13.54901 -13.30544 -13.06760 -12.99062 -12.80505 -12.55936 -12.38049 -12.04291 -11.87290 -11.50212 -11.11043 -10.96397 -10.60812 -9.85936 -9.36503 -8.50715 -6.65482 -0.61635 -0.06432 0.90969 1.12534 1.22270 1.27809 1.37006 2.04154 2.12907 2.40502 2.67399 2.85578 3.01374 3.42791 3.53401 3.59915 3.67527 3.81464 3.96372 4.09892 4.12266 4.40907 4.48235 4.57231 4.59594 4.74660 4.83787 4.98182 5.07197 5.15721 5.18083 5.52094 5.60059 5.95318 6.39080 6.42620 6.60230 7.03265 8.64631 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.029059 B = 0.004856 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.318122 B = 5764.138992 C = 6072.818100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.030 3.970 3 Si 0.917 3.083 4 H -0.245 1.245 5 H -0.231 1.231 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.052 0.948 9 C 0.203 3.797 10 O -0.549 6.549 11 C -0.002 4.002 12 N -0.381 5.381 13 C 0.396 3.604 14 N -0.497 5.497 15 C 0.040 3.960 16 C -0.078 4.078 17 C -0.065 4.065 18 C -0.112 4.112 19 C 0.106 3.894 20 F -0.142 7.142 21 C -0.069 4.069 22 O -0.244 6.244 23 C 0.032 3.968 24 H 0.276 0.724 25 H 0.359 0.641 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.166 0.834 29 H 0.202 0.798 30 H 0.192 0.808 31 H 0.116 0.884 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.975 -8.333 -12.472 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.172 4.172 3 Si 0.740 3.260 4 H -0.170 1.170 5 H -0.155 1.155 6 H -0.206 1.206 7 C -0.591 4.591 8 H 0.070 0.930 9 C 0.161 3.839 10 O -0.360 6.360 11 C -0.128 4.128 12 N -0.108 5.108 13 C 0.096 3.904 14 N -0.232 5.232 15 C -0.073 4.073 16 C -0.097 4.097 17 C -0.084 4.084 18 C -0.131 4.131 19 C 0.085 3.915 20 F -0.121 7.121 21 C -0.121 4.121 22 O -0.134 6.134 23 C -0.095 4.095 24 H 0.085 0.915 25 H 0.212 0.788 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.184 0.816 29 H 0.219 0.781 30 H 0.209 0.791 31 H 0.135 0.865 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.096 -8.115 -12.186 20.324 hybrid contribution -1.963 0.296 0.512 2.050 sum 12.133 -7.820 -11.675 18.565 Atomic orbital electron populations 1.69998 1.08101 1.29089 1.48530 1.25878 0.95709 1.03119 0.92515 0.86358 0.80122 0.78847 0.80675 1.17024 1.15457 1.20618 1.21366 0.89509 0.94676 1.53594 0.92997 1.20344 0.91048 0.88517 0.83961 1.86455 1.67114 1.26031 1.56363 1.25367 0.90864 0.95047 1.01564 1.66135 1.35668 1.05162 1.03853 1.25086 0.89554 0.82596 0.93190 1.71019 1.22006 1.26170 1.03976 1.20309 0.99116 0.89365 0.98523 1.20874 0.99340 0.99143 0.90335 1.21498 0.95649 0.90311 1.00946 1.21587 0.96502 1.03448 0.91541 1.16979 0.95479 0.83758 0.95254 1.91502 1.68048 1.66535 1.85971 1.20732 1.04039 0.98733 0.88564 1.84626 1.58797 1.31308 1.38663 1.24181 0.91437 0.97506 0.96348 0.91477 0.78845 0.89986 0.87228 0.81625 0.78110 0.79054 0.86536 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.45 13.96 21.45 0.30 -53.15 16 2 C 0.03 1.60 5.47 84.66 0.46 2.06 16 3 Si 0.92 38.39 24.30 68.60 1.67 40.06 16 4 H -0.25 -9.54 7.05 99.48 0.70 -8.84 16 5 H -0.23 -8.79 5.15 99.48 0.51 -8.28 16 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -30.02 9.19 25.60 0.24 -29.78 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 C 0.20 9.38 1.05 -10.89 -0.01 9.36 16 10 O -0.55 -24.77 13.35 -148.98 -1.99 -26.76 16 11 C 0.00 -0.08 6.41 86.37 0.55 0.47 16 12 N -0.38 -15.89 6.32 -833.30 -5.27 -21.16 16 13 C 0.40 16.15 7.16 179.31 1.28 17.44 16 14 N -0.50 -19.14 11.39 -306.56 -3.49 -22.63 16 15 C 0.04 1.28 7.23 39.28 0.28 1.56 16 16 C -0.08 -1.57 10.10 22.48 0.23 -1.34 16 17 C -0.07 -0.81 10.02 22.25 0.22 -0.59 16 18 C -0.11 -1.77 10.01 22.36 0.22 -1.54 16 19 C 0.11 2.85 7.31 22.39 0.16 3.02 16 20 F -0.14 -4.20 17.27 44.97 0.78 -3.42 16 21 C -0.07 -2.39 7.40 22.87 0.17 -2.22 16 22 O -0.24 -9.87 9.30 -14.30 -0.13 -10.00 16 23 C 0.03 1.36 7.15 86.41 0.62 1.97 16 24 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 25 H 0.36 15.10 3.57 -74.06 -0.26 14.83 16 26 H 0.08 3.57 7.86 -2.38 -0.02 3.55 16 27 H 0.11 4.36 6.82 -2.39 -0.02 4.34 16 28 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.20 0.40 8.06 -2.91 -0.02 0.37 16 30 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 31 H 0.12 4.50 8.14 -2.39 -0.02 4.48 16 32 H 0.09 3.97 6.95 -2.38 -0.02 3.96 16 Total: -1.00 -69.12 277.58 -2.98 -72.11 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.72 Total: 24.53 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 4.43 Total: 0.42 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -8.46 Total: -96.93 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -2.12 Total: -36.76 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.78 Total: -3.42 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.67 Total: 40.06 kcal Total: -69.12 -2.98 -72.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348111090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.082 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds